jgi.p|Nanoce1779_2|596142, mRNA_7230 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596142
Unique Name	mRNA_7230
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	954
Alignment location	scaffold_16:649026..650666 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596228
Track	FilteredModels2
ProteinId	596142

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:649026..650666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596142	gene_7230	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596142	mRNA_7230-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7230	CDS_7230	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:649026..650666+
coding sequence from alignment at scaffold_16:649026..650666+

mRNA sequence

>mRNA_7230 ID=mRNA_7230|Name=jgi.p|Nanoce1779_2|596142|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
CCGCAGCCTCCTCCTCCTCCTCTTCTTCGATGGCTACCCCAGCGGCGTCC
TCCCTTCTCCTCCCTCGACGCTTCCTCCCCATTGTCGTCAACAATGAGGA
ACATGAAAGAAGGACCAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGG
AGGAAGAAGACTCATCAATTTTTACCTTGCTTCAGTGGAACATCATGGCC
GACACATTTTCCTCCCCCTCCCTTTACACCCGTGTGCCCGCCATAGGGGT
CATGGAATGGGGCTTAAGAAGGGTGAAAATCCTCGAGGAAATCACCCGCT
GGCAGCCGGACGTCGTCACGCTACAGGAGGTGGATCACTTTTTTGATGAC
CTCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTTGTTCGTAA
GCCCCTCAATGCTGATGGCGCTGCCACCTTTGTCAAGACTTCCTCTCTGG
AGGTCGTCTCTTCCCATGCCTACAGCTACCTTGAGGAGGAGGAGGAGGAG
GGGGAGGGAGGGAGTGAGGGAGGAGTGAGAAGCAGGCCTTCGAATCAGGT
GGCGCTCGCGGTGATGGTGCGGAATAGGAAAGGAAGAGGGAGGAGGAAGG
GGGAGGAGGAGGAGGAGGAGAAGGGAAGGAGGGAGGAGTGGCTCGTCGTC
AACACGCACTTGAAGGCCATGAAAACTGCGGCGGGGGAGCAGGTACGAAC
GGAGAGAGGGAGGGAGGGAGTGGGAGAAGCACGAAAGGCCCATATAGCCG
GACACGTCCGGCCACTACTTGATGACACACTCACCCTCAACCCTTCTCTT
CCTTTCTTCTTTCCTTCCTCTCTCCTCTCTCTTTCCCTCTCTCCCTTTCT
CCAGGTACGGGCCTCTCAAGCCCGGCAGCTGGTGGCCCATATACGGGCAC
AACGTGAAGCCTACAGGTGAGTCCTTCCCTCCTCCCTCCCTCCCTCCCTC
CCTC

protein sequence of jgi.p|Nanoce1779_2|596142

>mRNA_7230-protein ID=mRNA_7230-protein|Name=jgi.p|Nanoce1779_2|596142|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MATPAASSLLLPRRFLPIVVNNEEHERRTNTGMSGGEEGEEEEDSSIFTL
LQWNIMADTFSSPSLYTRVPAIGVMEWGLRRVKILEEITRWQPDVVTLQE
VDHFFDDLQPALQRLGYTGLFVRKPLNADGAATFVKTSSLEVVSSHAYSY
LEEEEEEGEGGSEGGVRSRPSNQVALAVMVRNRKGRGRRKGEEEEEEKGR
REEWLVVNTHLKAMKTAAGEQVRTERGREGVGEARKAHIAGHVRPLLDDT
LTLNPSLPFFFPSSLLSLSLSPFLQVRASQARQLVAHIRAQREAYR*

mRNA from alignment at scaffold_16:649026..650666+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7230 ID=mRNA_7230|Name=jgi.p|Nanoce1779_2|596142|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at scaffold_16:649026..650666+ (Nannochloropsis oceanica)
CCGCAGCCTCCTCCTCCTCCTCTTCTTCGATGGCTACCCCAGCGGCGTCC
TCCCTTCTCCTCCCTCGACGCTTCCTCCCCATTGTCGTCAACAATGAGGA
ACATGAAAGAAGGACCAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGG
AGGAAGAAGACTCATCAATTTTTACCTTGCTTCAGGTTTGCAATACTGCC
ATTTTTAATCTCTTAGCGTAGCCTTTTTTCCTCCTTCCATTCCTCCCGTC
TCCTCCCATCCCTCATTCCCTTCTCTTACAGTGGAGCATCGTGTTGTCGT
CTGTGCCTCCCACTCTTACCGCATGGACATATGTCTCTCCCTTACCATGT
GGATGCATATGCTTCTCCTCTCCCCACACGCGAGTATCCTCCATCTTCTC
ATTCCAGGCGCTCTCCCCATCTATTCTCCTTGTCCTTTCTCTTCACCCCT
CCCTCCCTCCCTCCCCCTCCCTCAGTGGAACATCATGGCCGACACATTTT
CCTCCCCCTCCCTTTACACCCGTGTGCCCGCCATAGGGGTCATGGAATGG
GGCTTAAGAAGGGTGAAAATCCTCGAGGAAATCACCCGCTGGCAGCCGGA
CGTCGTCACGCTACAGGTATCCCCACTTACCCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTGCATCCTCCTTCCTTT
TGGCATGGGACACACATGTTTTGCTTTTTCTGTTCATTCGCAATACTCGC
ACAACCCACACACCCCTGTTACTCTCTCTCTCCTGTTAGACACCCTCCTC
TCATTCTCCGCCTCCTCCCTCCCCACAAACTCTTCCATTATGGTGGAATA
ATCTTCCACGCGAATCCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCAGG
AGGTGGATCACTTTTTTGATGACCTCCAACCCGCCCTCCAACGCCTTGGC
TACACCGGACTCTTTGTTCGTAAGCCCCTCAATGCTGATGGTATGTGGCC
TTCCTCCCCCCCTTCCTCCCTTCTTCTCTCGCCCTCATTCTCAGGTGATG
TCTTTTACACCCTGCCGCTGCTCAGGCTTCTCCCTCCCTCCCTCCCTCTC
TCAGGCGCTGCCACCTTTGTCAAGACTTCCTCTCTGGAGGTCGTCTCTTC
CCATGCCTACAGCTACCTTGAGGAGGAGGAGGAGGAGGGGGAGGGAGGGA
GTGAGGGAGGAGTGAGAAGCAGGCCTTCGAATCAGGTGGCGCTCGCGGTG
ATGGTGCGGAATAGGAAAGGAAGAGGGAGGAGGAAGGGGGAGGAGGAGGA
GGAGGAGAAGGGAAGGAGGGAGGAGTGGCTCGTCGTCAACACGCACTTGA
AGGCCATGAAAACTGCGGCGGGGGAGCAGGTACGAACGGAGAGAGGGAGG
GAGGGAGTGGGAGAAGCACGAAAGGCCCATATAGCCGGACACGTCCGGCC
ACTACTTGATGACACACTCACCCTCAACCCTTCTCTTCCTTTCTTCTTTC
CTTCCTCTCTCCTCTCTCTTTCCCTCTCTCCCTTTCTCCAGGTACGGGCC
TCTCAAGCCCGGCAGCTGGTGGCCCATATACGGGCACAACGTGAAGCCTA
CAGGTGAGTCCTTCCCTCCTCCCTCCCTCCCTCCCTCCCTC

Coding sequence (CDS) from alignment at scaffold_16:649026..650666+

>mRNA_7230 ID=mRNA_7230|Name=jgi.p|Nanoce1779_2|596142|organism=Nannochloropsis oceanica|type=CDS|length=3564bp|location=Sequence derived from alignment at scaffold_16:649026..650666+ (Nannochloropsis oceanica)
ATGGCTACCCCAGCGGCGTCCTCCCTTCTCCTCCCTCGACGCTTCCTCCC
CATTGTCGTCAACAATGAGGAACATGAAAGAAGGACCAACACTGGCATGT
CCGGTGGGGAAGAGGGAGAGGAGGAAGAAGACTCATCAATTTTTACCTTG
CTTCAGTGGAACATCATGGCCGACACATTTTCCTCCCCCTCCCTTTACAC
CCGTGTGCCCGCCATAGGGGTCATGGAATGGGGCTTAAGAAGGGTGAAAA
TCCTCGAGGAAATCACCCGCTGGCAGCCGGACGTCGTCACGCTACAGGAG
GTGGATCACTTTTTTGATGACCTCCAACCCGCCCTCCAACGCCTTGGCTA
CACCGGACTCTTTGTTCGTAAGCCCCTCAATGCTGATGGCGCTGCCACCT
TTGTCAAGACTTCCTCTCTGGAGGTCGTCTCTTCCCATGCCTACAGCTAC
CTTGAGGAGGAGGAGGAGGAGGGGGAGGGAGGGAGTGAGGGAGGAGTGAG
AAGCAGGCCTTCGAATCAGGTGGCGCTCGCGGTGATGGTGCGGAATAGGA
AAGGAAGAGGGAGGAGGAAGGGGGAGGAGGAGGAGGAGGAGAAGGGAAGG
AGGGAGGAGTGGCTCGTCGTCAACACGCACTTGAAGGCCATGAAAACTGC
GGCGGGGGAGCAGGTACGAACGGAGAGAGGGAGGGAGGGAGTGGGAGAAG
CACGAAAGGCCCATATAGCCGGACACGTCCGGCCACTACTTGATGACACA
CTCACCCTCAACCCTTCTCTTCCTTTCTTCTTTCCTTCCTCTCTCCTCTC
TCTTTCCCTCTCTCCCTTTCTCCAGGTACGGGCCTCTCAAGCCCGGCAGC
TGGTGGCCCATATACGGGCACAACGTGAAGCCTACAGGTGAATGGCTACC
CCAGCGGCGTCCTCCCTTCTCCTCCCTCGACGCTTCCTCCCCATTGTCGT
CAACAATGAGGAACATGAAAGAAGGACCAACACTGGCATGTCCGGTGGGG
AAGAGGGAGAGGAGGAAGAAGACTCATCAATTTTTACCTTGCTTCAGTGG
AACATCATGGCCGACACATTTTCCTCCCCCTCCCTTTACACCCGTGTGCC
CGCCATAGGGGTCATGGAATGGGGCTTAAGAAGGGTGAAAATCCTCGAGG
AAATCACCCGCTGGCAGCCGGACGTCGTCACGCTACAGGAGGTGGATCAC
TTTTTTGATGACCTCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACT
CTTTGTTCGTAAGCCCCTCAATGCTGATGGCGCTGCCACCTTTGTCAAGA
CTTCCTCTCTGGAGGTCGTCTCTTCCCATGCCTACAGCTACCTTGAGGAG
GAGGAGGAGGAGGGGGAGGGAGGGAGTGAGGGAGGAGTGAGAAGCAGGCC
TTCGAATCAGGTGGCGCTCGCGGTGATGGTGCGGAATAGGAAAGGAAGAG
GGAGGAGGAAGGGGGAGGAGGAGGAGGAGGAGAAGGGAAGGAGGGAGGAG
TGGCTCGTCGTCAACACGCACTTGAAGGCCATGAAAACTGCGGCGGGGGA
GCAGGTACGAACGGAGAGAGGGAGGGAGGGAGTGGGAGAAGCACGAAAGG
CCCATATAGCCGGACACGTCCGGCCACTACTTGATGACACACTCACCCTC
AACCCTTCTCTTCCTTTCTTCTTTCCTTCCTCTCTCCTCTCTCTTTCCCT
CTCTCCCTTTCTCCAGGTACGGGCCTCTCAAGCCCGGCAGCTGGTGGCCC
ATATACGGGCACAACGTGAAGCCTACAGGTGAATGGCTACCCCAGCGGCG
TCCTCCCTTCTCCTCCCTCGACGCTTCCTCCCCATTGTCGTCAACAATGA
GGAACATGAAAGAAGGACCAACACTGGCATGTCCGGTGGGGAAGAGGGAG
AGGAGGAAGAAGACTCATCAATTTTTACCTTGCTTCAGTGGAACATCATG
GCCGACACATTTTCCTCCCCCTCCCTTTACACCCGTGTGCCCGCCATAGG
GGTCATGGAATGGGGCTTAAGAAGGGTGAAAATCCTCGAGGAAATCACCC
GCTGGCAGCCGGACGTCGTCACGCTACAGGAGGTGGATCACTTTTTTGAT
GACCTCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTTGTTCG
TAAGCCCCTCAATGCTGATGGCGCTGCCACCTTTGTCAAGACTTCCTCTC
TGGAGGTCGTCTCTTCCCATGCCTACAGCTACCTTGAGGAGGAGGAGGAG
GAGGGGGAGGGAGGGAGTGAGGGAGGAGTGAGAAGCAGGCCTTCGAATCA
GGTGGCGCTCGCGGTGATGGTGCGGAATAGGAAAGGAAGAGGGAGGAGGA
AGGGGGAGGAGGAGGAGGAGGAGAAGGGAAGGAGGGAGGAGTGGCTCGTC
GTCAACACGCACTTGAAGGCCATGAAAACTGCGGCGGGGGAGCAGGTACG
AACGGAGAGAGGGAGGGAGGGAGTGGGAGAAGCACGAAAGGCCCATATAG
CCGGACACGTCCGGCCACTACTTGATGACACACTCACCCTCAACCCTTCT
CTTCCTTTCTTCTTTCCTTCCTCTCTCCTCTCTCTTTCCCTCTCTCCCTT
TCTCCAGGTACGGGCCTCTCAAGCCCGGCAGCTGGTGGCCCATATACGGG
CACAACGTGAAGCCTACAGGTGAATGGCTACCCCAGCGGCGTCCTCCCTT
CTCCTCCCTCGACGCTTCCTCCCCATTGTCGTCAACAATGAGGAACATGA
AAGAAGGACCAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGGAGGAAG
AAGACTCATCAATTTTTACCTTGCTTCAGTGGAACATCATGGCCGACACA
TTTTCCTCCCCCTCCCTTTACACCCGTGTGCCCGCCATAGGGGTCATGGA
ATGGGGCTTAAGAAGGGTGAAAATCCTCGAGGAAATCACCCGCTGGCAGC
CGGACGTCGTCACGCTACAGGAGGTGGATCACTTTTTTGATGACCTCCAA
CCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTTGTTCGTAAGCCCCT
CAATGCTGATGGCGCTGCCACCTTTGTCAAGACTTCCTCTCTGGAGGTCG
TCTCTTCCCATGCCTACAGCTACCTTGAGGAGGAGGAGGAGGAGGGGGAG
GGAGGGAGTGAGGGAGGAGTGAGAAGCAGGCCTTCGAATCAGGTGGCGCT
CGCGGTGATGGTGCGGAATAGGAAAGGAAGAGGGAGGAGGAAGGGGGAGG
AGGAGGAGGAGGAGAAGGGAAGGAGGGAGGAGTGGCTCGTCGTCAACACG
CACTTGAAGGCCATGAAAACTGCGGCGGGGGAGCAGGTACGAACGGAGAG
AGGGAGGGAGGGAGTGGGAGAAGCACGAAAGGCCCATATAGCCGGACACG
TCCGGCCACTACTTGATGACACACTCACCCTCAACCCTTCTCTTCCTTTC
TTCTTTCCTTCCTCTCTCCTCTCTCTTTCCCTCTCTCCCTTTCTCCAGGT
ACGGGCCTCTCAAGCCCGGCAGCTGGTGGCCCATATACGGGCACAACGTG
AAGCCTACAGGTGA

Synonyms

Publications