jgi.p|Nanoce1779_2|573922, mRNA_723 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573922
Unique NamemRNA_723
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length573
Alignment locationscaffold_2:289881..290453 +

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Properties
Property NameValue
TranscriptId574008
TrackFilteredModels2
ProteinId573922
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:289881..290453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573922gene_723Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573922mRNA_723-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_723CDS_723Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_723 ID=mRNA_723|Name=jgi.p|Nanoce1779_2|573922|organism=Nannochloropsis oceanica|type=mRNA|length=573bp
GGGGGAAGGGAGGGAAGTTCAGCTTGAGCGACTTTAAAAACAAGAGGTTT
AAATTGATTCCGAGCATCGTCGAGGGTCCCTCGATGATTAAGTGGGCGGT
AGGCAACAAGCCAACGATTTTAGGCCAGAAGCTCACGCAGCGTTATTTCC
GGGGAGAGAACTATGTTGAGGTTGATGTGGATATTGCGAGCTCGGCGTTG
GCGAGTCAGATCGTGTCCTTGTGTCGGGGGTACGCACGATATCTAAAGGT
GGAGATGGGAATTGTCCTGCAGGGGGAAGAGGAGGCGGTGGAGTTGCCGG
AGAAATTGCTGGGGACGATTGGGATCGTGAATCTGGATATCAATGCATAT
GGAAAGGACGAGTATTTGAATATACCGGAGGGAGAGAGGGAATAAGGGCG
GGTGGAGGAAGGCGGATGGCTAGAACTGTGTAGATTTAGATGGTTAGGTT
GTCTCCAACAAATAGAAGTAGGTGTCTAGTAAACTAAATTACGACGCATT
GTACAGCACGTAAGACAGCAACAAGAACAATAAGAAGACAGAGAGAAAGT
AACGGTACCGAATCTCATAGATT
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protein sequence of jgi.p|Nanoce1779_2|573922

>mRNA_723-protein ID=mRNA_723-protein|Name=jgi.p|Nanoce1779_2|573922|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MIKWAVGNKPTILGQKLTQRYFRGENYVEVDVDIASSALASQIVSLCRGY
ARYLKVEMGIVLQGEEEAVELPEKLLGTIGIVNLDINAYGKDEYLNIPEG
ERE*
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mRNA from alignment at scaffold_2:289881..290453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_723 ID=mRNA_723|Name=jgi.p|Nanoce1779_2|573922|organism=Nannochloropsis oceanica|type=mRNA|length=573bp|location=Sequence derived from alignment at scaffold_2:289881..290453+ (Nannochloropsis oceanica)
GGGGGAAGGGAGGGAAGTTCAGCTTGAGCGACTTTAAAAACAAGAGGTTT
AAATTGATTCCGAGCATCGTCGAGGGTCCCTCGATGATTAAGTGGGCGGT
AGGCAACAAGCCAACGATTTTAGGCCAGAAGCTCACGCAGCGTTATTTCC
GGGGAGAGAACTATGTTGAGGTTGATGTGGATATTGCGAGCTCGGCGTTG
GCGAGTCAGATCGTGTCCTTGTGTCGGGGGTACGCACGATATCTAAAGGT
GGAGATGGGAATTGTCCTGCAGGGGGAAGAGGAGGCGGTGGAGTTGCCGG
AGAAATTGCTGGGGACGATTGGGATCGTGAATCTGGATATCAATGCATAT
GGAAAGGACGAGTATTTGAATATACCGGAGGGAGAGAGGGAATAAGGGCG
GGTGGAGGAAGGCGGATGGCTAGAACTGTGTAGATTTAGATGGTTAGGTT
GTCTCCAACAAATAGAAGTAGGTGTCTAGTAAACTAAATTACGACGCATT
GTACAGCACGTAAGACAGCAACAAGAACAATAAGAAGACAGAGAGAAAGT
AACGGTACCGAATCTCATAGATT
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Coding sequence (CDS) from alignment at scaffold_2:289881..290453+

>mRNA_723 ID=mRNA_723|Name=jgi.p|Nanoce1779_2|573922|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_2:289881..290453+ (Nannochloropsis oceanica)
ATGATTAAGTGGGCGGTAGGCAACAAGCCAACGATTTTAGGCCAGAAGCT
CACGCAGCGTTATTTCCGGGGAGAGAACTATGTTGAGGTTGATGTGGATA
TTGCGAGCTCGGCGTTGGCGAGTCAGATCGTGTCCTTGTGTCGGGGGTAC
GCACGATATCTAAAGGTGGAGATGGGAATTGTCCTGCAGGGGGAAGAGGA
GGCGGTGGAGTTGCCGGAGAAATTGCTGGGGACGATTGGGATCGTGAATC
TGGATATCAATGCATATGGAAAGGACGAGTATTTGAATATACCGGAGGGA
GAGAGGGAATAA
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Synonyms
Publications