jgi.p|Nanoce1779_2|107690, mRNA_7222 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|107690
Unique Name	mRNA_7222
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1502
Alignment location	scaffold_16:616804..619172 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	107776
Track	FilteredModels2
ProteinId	107690

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:616804..619172 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|107690	gene_7222	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|107690	mRNA_7222-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7222	CDS_7222	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:616804..619172+
coding sequence from alignment at scaffold_16:616804..619172+

mRNA sequence

>mRNA_7222 ID=mRNA_7222|Name=jgi.p|Nanoce1779_2|107690|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp
ACACAGAGAGGAAGAGTTCAGATGCCCTATTCCACCATGGAAAGCGCCAG
CATTGCTTACCTTACATCTTTGACCTTTCCTCCTGTTACATTTTTGTCAC
TGTGGCCGCAGCGCTATCCTAATGTGAAGTAGTACGGTAACGGTAGCTTC
TGATCATCAGCGACAGTCGTTTCCTGCGGAGTCAGACGTGCTCCCCCACC
TACTCAGTCATGCACCCCTTTTGACAAAGACAATCACCAAACAGCGCGCA
AGGATGCGGCCCCACATGTTGCTCCAGCGGGGAAGCGGCATCTTATATCC
TTCCACGATCAAGCTACACCCTCCCATCCCTGCATCCTCCCCTCCCGCCT
CCCTCCCCACCGCCGCAGGCCGCCGCCGCCCGTTCTCCTCCTCCACCTCC
ACAAAGACAAGCAGCAGTACCGCTACGGGGTCCAAAAATACAGCGTTGGA
TACATGGACGACTAAAGACAAGGCTGGATTACTTCTGTTTGGAGGGCTGG
TGATTGGGACGGGGAGCCTAGGGATGTGGCAGGCGCAGAGGTATTATTGG
AAAATCGATGCGATCAAGGAGAGGAGCGAAATGCTGGCCAAGCAGCCCGA
GTCCTTGACAAACCTTCCCGAGTCCCACCGCCGCTACCACGTGCGAGGCA
CGTTTCTCCACGACAAAGAGCTGCACGTGGGTCCTCGTTCGGCTCCTCCT
TCTGTGCATGGCCCAGCTCAAGGGATGAGCACGAATCCTCAGGGTCTGTA
TGTGCTGACGCCCTTCCGGTGTGAGGGGGACGGTCGTCTCCTCCTCGTGA
ACCGTGGCTGGGTGCCGCTCCGCTCTCTCTCCTCCCTCTCTCGTCCTCCC
TCGACAGTCTCGCTAGTAGGGGTGGTAGAGCGGAGGGAGGGAAGGAAAGG
AAAGAGGAAGCCTTTATTATGGGTGGACCTGCCGGCAATCGAGAGGTGGT
TGATGGGGGAGGAAGGAGAGGAGGGCGGGGGGAAAGGAGCGACCGAGGGG
CAGCTATACTACTTCATTCAATTGCAAGAGGAAGCCGTCTCCTCCTCATC
CTCCTTCTCCTCCTCCTCCTCCTCTTCCTCTTCGCTCTCGTCCTCTCTCC
CTTCCTGGCCGGTGCCCAAGGCTGTGACGGATGTGGGCCAATTTTATGTG
CAGCCTTCCACCCACCTCGTTTATGCACTCACCTGGTTCTCGCTTGCCGG
GGCCGGCGCAATCATGACCCGTAGGATTCTCAGGCCCAAGATTCGAAGAG
GGTGAAGGGAGAAGGGAGGGAACGAGGGAGGGAAGGAGGGACAAAATAGT
ACCCGGAAATTAAAAGGAAAGGAATGAGGCCACGGCCGTGAGTGTGATGT
GCGTGGAGAGACAGGTGAGCAGGAGGCTGCCTTTACATCCTCTTCTATGT
TGTATTTTACACCTCTCTTTCATTATAGAGATATAGATAGAAAAAATAGA
TACAAATATATTTATTTTGATCTTCAATCTTCTTTTCTGCGTGCTGTTGC
TT

protein sequence of jgi.p|Nanoce1779_2|107690

>mRNA_7222-protein ID=mRNA_7222-protein|Name=jgi.p|Nanoce1779_2|107690|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MRPHMLLQRGSGILYPSTIKLHPPIPASSPPASLPTAAGRRRPFSSSTST
KTSSSTATGSKNTALDTWTTKDKAGLLLFGGLVIGTGSLGMWQAQRYYWK
IDAIKERSEMLAKQPESLTNLPESHRRYHVRGTFLHDKELHVGPRSAPPS
VHGPAQGMSTNPQGLYVLTPFRCEGDGRLLLVNRGWVPLRSLSSLSRPPS
TVSLVGVVERREGRKGKRKPLLWVDLPAIERWLMGEEGEEGGGKGATEGQ
LYYFIQLQEEAVSSSSSFSSSSSSSSSLSSSLPSWPVPKAVTDVGQFYVQ
PSTHLVYALTWFSLAGAGAIMTRRILRPKIRRG*

mRNA from alignment at scaffold_16:616804..619172+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7222 ID=mRNA_7222|Name=jgi.p|Nanoce1779_2|107690|organism=Nannochloropsis oceanica|type=mRNA|length=2369bp|location=Sequence derived from alignment at scaffold_16:616804..619172+ (Nannochloropsis oceanica)
ACACAGAGAGGAAGAGTTCAGATGCCCTATTCCACCATGGAAAGCGCCAG
CATTGCTTACCTTACATCTTTGACCTTTCCTCCTGTTACATTTTTGTCAC
TGTGGCCGCAGCGCTATCCTAATGTGAAGTAGTACGGTAACGGTAGCTTC
TGATCATCAGCGACAGTCGTTTCCTGCGGAGTCAGACGTGCTCCCCCACC
TACTCAGTCATGCACCCCTTTTGACAAAGACAATCACCAAACAGCGCGCA
AGGATGCGGCCCCACATGTTGCTCCAGCGGGGAAGCGGCATCTTATATCC
TTCCACGATCAAGCTACACCCTCCCATCCCTGCATCCTCCCCTCCCGCCT
CCCTCCCCACCGCCGCAGGCCGCCGCCGCCCGTTCTCCTCCTCCACCTCC
ACAAAGACAAGCAGCAGTACCGCTACGGGGTCCAAAAATACAGCGTTGGA
TACATGGACGACTAAAGACAAGGCTGGATTACTTCTGTTTGGAGGGCTGG
TGATTGGGACGGGGAGCCTAGGGATGTGGCAGGCGCAGAGGTATTATTGG
AAAATCGATGCGATCAAGGAGAGGAGCGAAATGCTGGCCAAGCAGCCCGA
GTCCTTGACAAAGTGAGTAGATGAGGAGAGAAGTATGAAGGAGGCGCGTT
TGTCTTTGTCTCCGCGTCGTTGTTGCTGTTGATGATGGTGATGGTGTTTG
CTAATGTTTGTTGTTGTTGTTGTTGTTGTTCTTGTTCTTGTTCTTATCTC
TGTTGTGGTTGTGATTGTTGCGGTGATTGTTGTTGTGATGGTTATTTCCA
GTATTGCTGCTTTTGTAAATGTTGCCGCTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTCTTGGTTTTTTTTTCCCTCTTCA
GATGAATGTCTGATTTATTAAGGCTTAAGTGCACCGCAATATCGTTAATA
CGACCGAATTCCGATGAAAGCGTGTATAGCCATCGTCATACGTGGTGATC
ACCTCAACTTCCTGACCATCCCTCCGTCCCTCCCTCTCTTCCTCCTCAGC
CTTCCCGAGTCCCACCGCCGCTACCACGTGCGAGGCACGTTTCTCCACGA
CAAAGAGCTGCACGTGGGTCCTCGTTCGGCTCCTCCTTCTGTGCATGGCC
CAGCTCAAGGGATGAGCACGAATCCTCAGGGTCTGTATGTGCTGACGCCC
TTCCGGTGTGAGGGGGACGGGTAAGATGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAAGGGGGATGAGGG
GAGGAAGGTTCAGGGTCTACTTCAACAGGTCAGTTTTTATAAAGGTTCGT
GATTTCTGCGTGAAATTAGCTGTTGAGTGCTTGTCTCTCCTTCTCTCCCT
TCCTTCCTTCCTCCCTCTCTCCCTGCCTCCCTCCCCTTCACTCCCCATCA
CTCCACACTTCCATCTTTTGAGCCATCACCCTCCATCCCTCATCATCTGA
GCCATCACCATCCATCCCTCCCTCCCTCGCTTCCTCCCTCCCTCCCTCGC
TTCCTCCCTCCCTCCCCAGTCGTCTCCTCCTCGTGAACCGTGGCTGGGTG
CCGCTCCGCTCTCTCTCCTCCCTCTCTCGTCCTCCCTCGACAGTCTCGCT
AGTAGGGGTGGTAGAGCGTGAAGGAGAGAAGGGAGGGAGATTTGCGCCCG
TCAATGATTTCGCTGTCTCAGCCGGGGAGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAAGGAAAGGAAAGAGGAAGCCTTTATTATGGGTGGACCTGCC
GGCAATCGAGAGGTGGTTGATGGGGGAGGAAGGAGAGGAGGGCGGGGGGA
AAGGAGCGACCGAGGGGCAGCTATACTACTTCATTCAATTGCAAGAGGAA
GCCGTCTCCTCCTCATCCTCCTTCTCCTCCTCCTCCTCCTCTTCCTCTTC
GCTCTCGTCCTCTCTCCCTTCCTGGCCGGTGCCCAAGGCTGTGACGGATG
TGGGCCAATTTTATGTGCAGCCTTCCACCCACCTCGTTTATGCACTCACC
TGGTTCTCGCTTGCCGGGGCCGGCGCAATCATGACCCGTAGGATTCTCAG
GCCCAAGATTCGAAGAGGGTGAAGGGAGAAGGGAGGGAACGAGGGAGGGA
AGGAGGGACAAAATAGTACCCGGAAATTAAAAGGAAAGGAATGAGGCCAC
GGCCGTGAGTGTGATGTGCGTGGAGAGACAGGTGAGCAGGAGGCTGCCTT
TACATCCTCTTCTATGTTGTATTTTACACCTCTCTTTCATTATAGAGATA
TAGATAGAAAAAATAGATACAAATATATTTATTTTGATCTTCAATCTTCT
TTTCTGCGTGCTGTTGCTT

Coding sequence (CDS) from alignment at scaffold_16:616804..619172+

>mRNA_7222 ID=mRNA_7222|Name=jgi.p|Nanoce1779_2|107690|organism=Nannochloropsis oceanica|type=CDS|length=4008bp|location=Sequence derived from alignment at scaffold_16:616804..619172+ (Nannochloropsis oceanica)
ATGCGGCCCCACATGTTGCTCCAGCGGGGAAGCGGCATCTTATATCCTTC
CACGATCAAGCTACACCCTCCCATCCCTGCATCCTCCCCTCCCGCCTCCC
TCCCCACCGCCGCAGGCCGCCGCCGCCCGTTCTCCTCCTCCACCTCCACA
AAGACAAGCAGCAGTACCGCTACGGGGTCCAAAAATACAGCGTTGGATAC
ATGGACGACTAAAGACAAGGCTGGATTACTTCTGTTTGGAGGGCTGGTGA
TTGGGACGGGGAGCCTAGGGATGTGGCAGGCGCAGAGGTATTATTGGAAA
ATCGATGCGATCAAGGAGAGGAGCGAAATGCTGGCCAAGCAGCCCGAGTC
CTTGACAAACCTTCCCGAGTCCCACCGCCGCTACCACGTGCGAGGCACGT
TTCTCCACGACAAAGAGCTGCACGTGGGTCCTCGTTCGGCTCCTCCTTCT
GTGCATGGCCCAGCTCAAGGGATGAGCACGAATCCTCAGGGTCTGTATGT
GCTGACGCCCTTCCGGTGTGAGGGGGACGGTCGTCTCCTCCTCGTGAACC
GTGGCTGGGTGCCGCTCCGCTCTCTCTCCTCCCTCTCTCGTCCTCCCTCG
ACAGTCTCGCTAGTAGGGGTGGTAGAGCGGAGGGAGGGAAGGAAAGGAAA
GAGGAAGCCTTTATTATGGGTGGACCTGCCGGCAATCGAGAGGTGGTTGA
TGGGGGAGGAAGGAGAGGAGGGCGGGGGGAAAGGAGCGACCGAGGGGCAG
CTATACTACTTCATTCAATTGCAAGAGGAAGCCGTCTCCTCCTCATCCTC
CTTCTCCTCCTCCTCCTCCTCTTCCTCTTCGCTCTCGTCCTCTCTCCCTT
CCTGGCCGGTGCCCAAGGCTGTGACGGATGTGGGCCAATTTTATGTGCAG
CCTTCCACCCACCTCGTTTATGCACTCACCTGGTTCTCGCTTGCCGGGGC
CGGCGCAATCATGACCCGTAGGATTCTCAGGCCCAAGATTCGAAGAGGGT
GAATGCGGCCCCACATGTTGCTCCAGCGGGGAAGCGGCATCTTATATCCT
TCCACGATCAAGCTACACCCTCCCATCCCTGCATCCTCCCCTCCCGCCTC
CCTCCCCACCGCCGCAGGCCGCCGCCGCCCGTTCTCCTCCTCCACCTCCA
CAAAGACAAGCAGCAGTACCGCTACGGGGTCCAAAAATACAGCGTTGGAT
ACATGGACGACTAAAGACAAGGCTGGATTACTTCTGTTTGGAGGGCTGGT
GATTGGGACGGGGAGCCTAGGGATGTGGCAGGCGCAGAGGTATTATTGGA
AAATCGATGCGATCAAGGAGAGGAGCGAAATGCTGGCCAAGCAGCCCGAG
TCCTTGACAAACCTTCCCGAGTCCCACCGCCGCTACCACGTGCGAGGCAC
GTTTCTCCACGACAAAGAGCTGCACGTGGGTCCTCGTTCGGCTCCTCCTT
CTGTGCATGGCCCAGCTCAAGGGATGAGCACGAATCCTCAGGGTCTGTAT
GTGCTGACGCCCTTCCGGTGTGAGGGGGACGGTCGTCTCCTCCTCGTGAA
CCGTGGCTGGGTGCCGCTCCGCTCTCTCTCCTCCCTCTCTCGTCCTCCCT
CGACAGTCTCGCTAGTAGGGGTGGTAGAGCGGAGGGAGGGAAGGAAAGGA
AAGAGGAAGCCTTTATTATGGGTGGACCTGCCGGCAATCGAGAGGTGGTT
GATGGGGGAGGAAGGAGAGGAGGGCGGGGGGAAAGGAGCGACCGAGGGGC
AGCTATACTACTTCATTCAATTGCAAGAGGAAGCCGTCTCCTCCTCATCC
TCCTTCTCCTCCTCCTCCTCCTCTTCCTCTTCGCTCTCGTCCTCTCTCCC
TTCCTGGCCGGTGCCCAAGGCTGTGACGGATGTGGGCCAATTTTATGTGC
AGCCTTCCACCCACCTCGTTTATGCACTCACCTGGTTCTCGCTTGCCGGG
GCCGGCGCAATCATGACCCGTAGGATTCTCAGGCCCAAGATTCGAAGAGG
GTGAATGCGGCCCCACATGTTGCTCCAGCGGGGAAGCGGCATCTTATATC
CTTCCACGATCAAGCTACACCCTCCCATCCCTGCATCCTCCCCTCCCGCC
TCCCTCCCCACCGCCGCAGGCCGCCGCCGCCCGTTCTCCTCCTCCACCTC
CACAAAGACAAGCAGCAGTACCGCTACGGGGTCCAAAAATACAGCGTTGG
ATACATGGACGACTAAAGACAAGGCTGGATTACTTCTGTTTGGAGGGCTG
GTGATTGGGACGGGGAGCCTAGGGATGTGGCAGGCGCAGAGGTATTATTG
GAAAATCGATGCGATCAAGGAGAGGAGCGAAATGCTGGCCAAGCAGCCCG
AGTCCTTGACAAACCTTCCCGAGTCCCACCGCCGCTACCACGTGCGAGGC
ACGTTTCTCCACGACAAAGAGCTGCACGTGGGTCCTCGTTCGGCTCCTCC
TTCTGTGCATGGCCCAGCTCAAGGGATGAGCACGAATCCTCAGGGTCTGT
ATGTGCTGACGCCCTTCCGGTGTGAGGGGGACGGTCGTCTCCTCCTCGTG
AACCGTGGCTGGGTGCCGCTCCGCTCTCTCTCCTCCCTCTCTCGTCCTCC
CTCGACAGTCTCGCTAGTAGGGGTGGTAGAGCGGAGGGAGGGAAGGAAAG
GAAAGAGGAAGCCTTTATTATGGGTGGACCTGCCGGCAATCGAGAGGTGG
TTGATGGGGGAGGAAGGAGAGGAGGGCGGGGGGAAAGGAGCGACCGAGGG
GCAGCTATACTACTTCATTCAATTGCAAGAGGAAGCCGTCTCCTCCTCAT
CCTCCTTCTCCTCCTCCTCCTCCTCTTCCTCTTCGCTCTCGTCCTCTCTC
CCTTCCTGGCCGGTGCCCAAGGCTGTGACGGATGTGGGCCAATTTTATGT
GCAGCCTTCCACCCACCTCGTTTATGCACTCACCTGGTTCTCGCTTGCCG
GGGCCGGCGCAATCATGACCCGTAGGATTCTCAGGCCCAAGATTCGAAGA
GGGTGAATGCGGCCCCACATGTTGCTCCAGCGGGGAAGCGGCATCTTATA
TCCTTCCACGATCAAGCTACACCCTCCCATCCCTGCATCCTCCCCTCCCG
CCTCCCTCCCCACCGCCGCAGGCCGCCGCCGCCCGTTCTCCTCCTCCACC
TCCACAAAGACAAGCAGCAGTACCGCTACGGGGTCCAAAAATACAGCGTT
GGATACATGGACGACTAAAGACAAGGCTGGATTACTTCTGTTTGGAGGGC
TGGTGATTGGGACGGGGAGCCTAGGGATGTGGCAGGCGCAGAGGTATTAT
TGGAAAATCGATGCGATCAAGGAGAGGAGCGAAATGCTGGCCAAGCAGCC
CGAGTCCTTGACAAACCTTCCCGAGTCCCACCGCCGCTACCACGTGCGAG
GCACGTTTCTCCACGACAAAGAGCTGCACGTGGGTCCTCGTTCGGCTCCT
CCTTCTGTGCATGGCCCAGCTCAAGGGATGAGCACGAATCCTCAGGGTCT
GTATGTGCTGACGCCCTTCCGGTGTGAGGGGGACGGTCGTCTCCTCCTCG
TGAACCGTGGCTGGGTGCCGCTCCGCTCTCTCTCCTCCCTCTCTCGTCCT
CCCTCGACAGTCTCGCTAGTAGGGGTGGTAGAGCGGAGGGAGGGAAGGAA
AGGAAAGAGGAAGCCTTTATTATGGGTGGACCTGCCGGCAATCGAGAGGT
GGTTGATGGGGGAGGAAGGAGAGGAGGGCGGGGGGAAAGGAGCGACCGAG
GGGCAGCTATACTACTTCATTCAATTGCAAGAGGAAGCCGTCTCCTCCTC
ATCCTCCTTCTCCTCCTCCTCCTCCTCTTCCTCTTCGCTCTCGTCCTCTC
TCCCTTCCTGGCCGGTGCCCAAGGCTGTGACGGATGTGGGCCAATTTTAT
GTGCAGCCTTCCACCCACCTCGTTTATGCACTCACCTGGTTCTCGCTTGC
CGGGGCCGGCGCAATCATGACCCGTAGGATTCTCAGGCCCAAGATTCGAA
GAGGGTGA

Synonyms

Publications