jgi.p|Nanoce1779_2|596096, mRNA_7221 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596096
Unique NamemRNA_7221
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length643
Alignment locationscaffold_16:614260..615203 -

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Properties
Property NameValue
TranscriptId596182
TrackFilteredModels2
ProteinId596096
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:614260..615203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596096gene_7221Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596096mRNA_7221-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7221CDS_7221Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7221 ID=mRNA_7221|Name=jgi.p|Nanoce1779_2|596096|organism=Nannochloropsis oceanica|type=mRNA|length=643bp
CTGAGACTGAGAGGAGGAAGATAGGGAAGACGGGGATGCATTCTCTTTAT
CGTCCTCGACAAGAAAGAGGCGGCGGCGGATAGGAGTCTGCTGGTGCTGG
TGCTGATGCTGGGAAGAGGAAGAGGGGAAGCGCCGGAGCAAGGCGGGGCT
ACTCATGCGGCTGCTGGTGCTGCTGATATTGTTGCTAATTGTGCTTCTTT
TCACGCTCTTCTTTTTCAGAGGGCGATGGGGGGGAGTGCATGGCCTGCGC
ACGCTCAAACAACCTTGCTGCTGCTGGCATTGTCGATTCTGGTGCAGGTG
CTGCTGTCTGCCGCTGTGTCGGGCACTGCTAGTGGTGGGAGCGACGCTGC
TTTGATGTGACTGCTTCGTCGGTCCCAGGGGAGGCAGGCCGAGGGGCGTG
CCGGCAGCCAAAGAGGGCAAGTGGTCGGGGTCCACCTGGACACGCATAAA
GAACTCGGCTAGAATGTCATCGACTTGTTTTGGGGCCAGGCAGGGTGCTT
CGGTGGTGCTGGTGGAGGGGGAGGCGACAAGCGGGCGGCTTGATGCTGTC
ATGGTGACTAAGCCTACTCTTCGCTTCGTCGTCGGTCGGGTGATGACTCC
TCGTGGTTTGTGCGTGGGCCTCTGATGACGAAAATTTGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|596096

>mRNA_7221-protein ID=mRNA_7221-protein|Name=jgi.p|Nanoce1779_2|596096|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MLGRGRGEAPEQGGATHAAAGAADIVANCASFHALLFQRAMGGSAWPAHA
QTTLLLLALSILVQVLLSAAVSGTASGGSDAAL
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mRNA from alignment at scaffold_16:614260..615203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7221 ID=mRNA_7221|Name=jgi.p|Nanoce1779_2|596096|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at scaffold_16:614260..615203- (Nannochloropsis oceanica)
CTGAGACTGAGAGGAGGAAGATAGGGAAGACGGGGATGCATTCTCTTTAT
CGTCCTCGACAAGAAAGAGGCGGCGGCGGATAGGAGTCTGCTGGTGCTGG
TGCTGATGCTGGGAAGAGGAAGAGGGGAAGCGCCGGAGCAAGGCGGGGCT
ACTCATGCGGCTGCTGGTGCTGCTGATATTGTTGCTAATTGTGCTTCTTT
TCACGCTCTTCTTTTTCAGAGGGCGATGGGGGGGAGTGCATGGCCTGGGA
GTACGTCAGACAGGAGGGAAGGAGTGCAAGGGGGGAGGGAGGGAGGGAGG
TTAGAGTGAGGAGGTTGAAGGACGTATCCGCATGATGCACAACCGCGACG
TCAAGACAAATTGGTCAAGATAACACATGCTTAATAATGCCAGATGTACA
ATTAAAGGGAGGCAGAAGGTGGAGGGCCTGGTTCAGCACCCCCTGCTGCG
CTGGTTGAACTGACGCACACGCCCCATATGGGCGGGCAAAGATGAGACTC
TTCAACTCCTGTCTTCCGGGTCGAAAGAAAAGGAGTTTTACATACCTGCG
CACGCTCAAACAACCTTGCTGCTGCTGGCATTGTCGATTCTGGTGCAGGT
GCTGCTGTCTGCCGCTGTGTCGGGCACTGCTAGTGGTGGGAGCGACGCTG
CTTTGATGTGACTGCTTCGTCGGTCCCAGGGGAGGCAGGCCGAGGGGCGT
GCCGGCAGCCAAAGAGGGCAAGTGGTCGGGGTCCACCTGGACACGCATAA
AGAACTCGGCTAGAATGTCATCGACTTGTTTTGGGGCCAGGCAGGGTGCT
TCGGTGGTGCTGGTGGAGGGGGAGGCGACAAGCGGGCGGCTTGATGCTGT
CATGGTGACTAAGCCTACTCTTCGCTTCGTCGTCGGTCGGGTGATGACTC
CTCGTGGTTTGTGCGTGGGCCTCTGATGACGAAAATTTGCCTGT
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Coding sequence (CDS) from alignment at scaffold_16:614260..615203-

>mRNA_7221 ID=mRNA_7221|Name=jgi.p|Nanoce1779_2|596096|organism=Nannochloropsis oceanica|type=CDS|length=500bp|location=Sequence derived from alignment at scaffold_16:614260..615203- (Nannochloropsis oceanica)
CTGCGCACGCTCAAACAACCTTGCTGCTGCTGGCATTGTCGATTCTGGTG
CAGGTGCTGCTGTCTGCCGCTGTGTCGGGCACTGCTAGTGGTGGGAGCGA
CGCTGCTTTGAATGCTGGGAAGAGGAAGAGGGGAAGCGCCGGAGCAAGGC
GGGGCTACTCATGCGGCTGCTGGTGCTGCTGATATTGTTGCTAATTGTGC
TTCTTTTCACGCTCTTCTTTTTCAGAGGGCGATGGGGGGGAGTGCATGGC
CTGCGCACGCTCAAACAACCTTGCTGCTGCTGGCATTGTCGATTCTGGTG
CAGGTGCTGCTGTCTGCCGCTGTGTCGGGCACTGCTAGTGGTGGGAGCGA
CGCTGCTTTGAATGCTGGGAAGAGGAAGAGGGGAAGCGCCGGAGCAAGGC
GGGGCTACTCATGCGGCTGCTGGTGCTGCTGATATTGTTGCTAATTGTGC
TTCTTTTCACGCTCTTCTTTTTCAGAGGGCGATGGGGGGGAGTGCATGGC
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Synonyms
Publications