jgi.p|Nanoce1779_2|573921, mRNA_722 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573921
Unique NamemRNA_722
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2174
Alignment locationscaffold_2:287707..289880 -

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Properties
Property NameValue
TranscriptId574007
TrackFilteredModels2
ProteinId573921
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:287707..289880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573921gene_722Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573921mRNA_722-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_722CDS_722Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_722 ID=mRNA_722|Name=jgi.p|Nanoce1779_2|573921|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp
CTCTCTCCTCCCCCTCTTCCATCGGAAAATCCAAAAACCGATCAAACAGG
GCCCAGAAACACCCATCCTCCTCCCGCCTATCACGTGGCAACGCAAATAC
CGTTACCGTGCTCAACGGCGGATCGCCTGGGACCTGAAAATTGACCAAAA
ACAAAAACGGTGGCCGTCCATCTCGCGCGTCCAAATCTTGCATCTCTCGT
AGCATGTCTGCCATTCTCCCGCGACTTGCTATGTGATCTTCTCGCTGGCC
GGGATATTCTGGAGGAATCTTGAAAACACAGGCCATGACCAGTTTCCCCA
CAGGGGGGCCCGCAGAGAATTTACGCCTATCTTGGAGGTAGTGCTTCCCC
CGGACATGAAATGTGTTGTCATTCCCAGGGTCATAATATGCAAAGGGGTG
TTGGACACGGAGGCCTACTGATGCATACTTTTCGAGGGACATGCCTGAAT
AACGTCCTTTAAGGTAAGGGAGTCGGGGTGGTCCTGGTGGGGCTGAAGAT
GGCGCTTCAGCTAGTTCTGCGGAGGAAGCGCTCTCGGCGTCCCCCGTGGA
CAGGAAAGGAAGAGAGGAACACGAAGAGGAGGGCACAATGCGGCCCCATT
CGGAAGAGGAGTGAGTGGACAAGGCACGGACTTTCTCCATGATCTGGCTG
GCTGTCCTCGAGGCACGTACCTCGTCATCCATGCCGTCATCGGTGCTGGC
CGTAGAGAGAGTCGGGCGGCCCCCAGAGATCTGCAGCTCGTCCCTTTCAT
CCATTCCTTCCAAGTTCACGTTTTCCTTGCCTTCAACTGTACAACCATCA
GCCTTAAGATACAAATCAATTGGGAAGCGATTTGTTGCACAGGTGATTCC
CCCGGTGGCTGCCCCTGCTGCTGCTTCTGCTGCTGCTGCTTCTACTTTCT
CGTCCTCGTCTATGTCCTCATCCTCCACCTCCATTTCCACCTCGTTGCCG
TCCGTGGAATTCAAGCTTACCCTACAAGCCCGACGATGTCGCGGCAGAAG
CATCGGATTGATTATCGATGTTTCTTTCCCTTTCCCCTTCCTTTGCTTCT
CTTTCTCCCCATCGTGTGAGGGTGGTGGGAATAGGGGTATACCCCCTGCC
GCCATTGCAGAGGATGAGTGCGGCATGGTGACTGCTGCTGTTGGTATTCT
CCTTTCATCGTCCCTCCCCCCTTTCTTCCCCTCCTCCTGCTGCTGCTGCT
GCTGTTGTTGTTGTTGCTGCTGCTGCTCCTGCTGCCCTTGAGCCAGCGGC
GGACCAAGAGGTCCCGCATCCAAAAACTGCCTTAAAATCGGATCATCACA
CGTGTCTCGCCGCTTCAGAATCTCCGTCATGAATTCCTCGAGACTTTCCG
CCCGCTTTGTTAAAAACTTGGGCGATAAATTCTTGAATAGAGTCTTGGGA
GGTATTGGCGGTAGAGAGCCTCCGTGCCTCGGCCTGCGCTTGTCCAAGCT
CTCCCGCAAATCTTCAAAATCCGAATATCGCTTCCACACCGACCAACTGC
TGGTACTGCTACTGCTGCTGTTATTGTCAACAGGACACGTCACTGCCACC
TTGTAGCTCGCGAAGCTTCTTTCTACCACCCGAAATGCCTTGATCTCTAT
ACACGCTCCAAACAAAGAAGAACTCCTTGCGTTTGCTGCTTGGTTCCCTG
TGCCTGCAGCGCCGGTGGCGGAGGCCATTTTCCTATTTGCAGCAGCCAAT
ATGCAGGCGCTACTTGCTCGGATCGGCGTGGATGTCGGGACAGGGACAGC
AGCCTGAGAGGAAGCAGCGCTGCGGCCCGGGTTCCCTACTCCCGTCACAG
CCTGCTTCTGAGTTTCAAGGGGGCCCAAGAAATGAAGTGCCAAGCCCGGC
CCAACCTCAATCGCAATGCCTACTAGAAAGACAAGCAACACGCCTAGCAA
CCAGGGCAGATGGGAAAACGCCAAGGGACTAACCAGGGCAACTCCAAGGA
CACCAGCACTGCCTTGCCCGTTAGCAACTACACCTTGCACTTTAATTAGA
AACCGACCGATGAGGTGGCGGTGGCCGTTGTGGGGCGGTGTCACAGGTGG
TATAGGCGACGCCTGGTCGGTGGGGTTCATCTTTGACAGGTCGTCTTGTT
ATGGCGCATTGAGACCTTGCTTGTGCGGGTGATGACTCACTGGGAAGGGG
GAGGCTGGCGCTTGCTCGTCTGTT
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protein sequence of jgi.p|Nanoce1779_2|573921

>mRNA_722-protein ID=mRNA_722-protein|Name=jgi.p|Nanoce1779_2|573921|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MIWLAVLEARTSSSMPSSVLAVERVGRPPEICSSSLSSIPSKFTFSLPST
VQPSALRYKSIGKRFVAQVIPPVAAPAAASAAAASTFSSSSMSSSSTSIS
TSLPSVEFKLTLQARRCRGRSIGLIIDVSFPFPFLCFSFSPSCEGGGNRG
IPPAAIAEDECGMVTAAVGILLSSSLPPFFPSSCCCCCCCCCCCCCSCCP
*
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mRNA from alignment at scaffold_2:287707..289880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_722 ID=mRNA_722|Name=jgi.p|Nanoce1779_2|573921|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp|location=Sequence derived from alignment at scaffold_2:287707..289880- (Nannochloropsis oceanica)
CTCTCTCCTCCCCCTCTTCCATCGGAAAATCCAAAAACCGATCAAACAGG
GCCCAGAAACACCCATCCTCCTCCCGCCTATCACGTGGCAACGCAAATAC
CGTTACCGTGCTCAACGGCGGATCGCCTGGGACCTGAAAATTGACCAAAA
ACAAAAACGGTGGCCGTCCATCTCGCGCGTCCAAATCTTGCATCTCTCGT
AGCATGTCTGCCATTCTCCCGCGACTTGCTATGTGATCTTCTCGCTGGCC
GGGATATTCTGGAGGAATCTTGAAAACACAGGCCATGACCAGTTTCCCCA
CAGGGGGGCCCGCAGAGAATTTACGCCTATCTTGGAGGTAGTGCTTCCCC
CGGACATGAAATGTGTTGTCATTCCCAGGGTCATAATATGCAAAGGGGTG
TTGGACACGGAGGCCTACTGATGCATACTTTTCGAGGGACATGCCTGAAT
AACGTCCTTTAAGGTAAGGGAGTCGGGGTGGTCCTGGTGGGGCTGAAGAT
GGCGCTTCAGCTAGTTCTGCGGAGGAAGCGCTCTCGGCGTCCCCCGTGGA
CAGGAAAGGAAGAGAGGAACACGAAGAGGAGGGCACAATGCGGCCCCATT
CGGAAGAGGAGTGAGTGGACAAGGCACGGACTTTCTCCATGATCTGGCTG
GCTGTCCTCGAGGCACGTACCTCGTCATCCATGCCGTCATCGGTGCTGGC
CGTAGAGAGAGTCGGGCGGCCCCCAGAGATCTGCAGCTCGTCCCTTTCAT
CCATTCCTTCCAAGTTCACGTTTTCCTTGCCTTCAACTGTACAACCATCA
GCCTTAAGATACAAATCAATTGGGAAGCGATTTGTTGCACAGGTGATTCC
CCCGGTGGCTGCCCCTGCTGCTGCTTCTGCTGCTGCTGCTTCTACTTTCT
CGTCCTCGTCTATGTCCTCATCCTCCACCTCCATTTCCACCTCGTTGCCG
TCCGTGGAATTCAAGCTTACCCTACAAGCCCGACGATGTCGCGGCAGAAG
CATCGGATTGATTATCGATGTTTCTTTCCCTTTCCCCTTCCTTTGCTTCT
CTTTCTCCCCATCGTGTGAGGGTGGTGGGAATAGGGGTATACCCCCTGCC
GCCATTGCAGAGGATGAGTGCGGCATGGTGACTGCTGCTGTTGGTATTCT
CCTTTCATCGTCCCTCCCCCCTTTCTTCCCCTCCTCCTGCTGCTGCTGCT
GCTGTTGTTGTTGTTGCTGCTGCTGCTCCTGCTGCCCTTGAGCCAGCGGC
GGACCAAGAGGTCCCGCATCCAAAAACTGCCTTAAAATCGGATCATCACA
CGTGTCTCGCCGCTTCAGAATCTCCGTCATGAATTCCTCGAGACTTTCCG
CCCGCTTTGTTAAAAACTTGGGCGATAAATTCTTGAATAGAGTCTTGGGA
GGTATTGGCGGTAGAGAGCCTCCGTGCCTCGGCCTGCGCTTGTCCAAGCT
CTCCCGCAAATCTTCAAAATCCGAATATCGCTTCCACACCGACCAACTGC
TGGTACTGCTACTGCTGCTGTTATTGTCAACAGGACACGTCACTGCCACC
TTGTAGCTCGCGAAGCTTCTTTCTACCACCCGAAATGCCTTGATCTCTAT
ACACGCTCCAAACAAAGAAGAACTCCTTGCGTTTGCTGCTTGGTTCCCTG
TGCCTGCAGCGCCGGTGGCGGAGGCCATTTTCCTATTTGCAGCAGCCAAT
ATGCAGGCGCTACTTGCTCGGATCGGCGTGGATGTCGGGACAGGGACAGC
AGCCTGAGAGGAAGCAGCGCTGCGGCCCGGGTTCCCTACTCCCGTCACAG
CCTGCTTCTGAGTTTCAAGGGGGCCCAAGAAATGAAGTGCCAAGCCCGGC
CCAACCTCAATCGCAATGCCTACTAGAAAGACAAGCAACACGCCTAGCAA
CCAGGGCAGATGGGAAAACGCCAAGGGACTAACCAGGGCAACTCCAAGGA
CACCAGCACTGCCTTGCCCGTTAGCAACTACACCTTGCACTTTAATTAGA
AACCGACCGATGAGGTGGCGGTGGCCGTTGTGGGGCGGTGTCACAGGTGG
TATAGGCGACGCCTGGTCGGTGGGGTTCATCTTTGACAGGTCGTCTTGTT
ATGGCGCATTGAGACCTTGCTTGTGCGGGTGATGACTCACTGGGAAGGGG
GAGGCTGGCGCTTGCTCGTCTGTT
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Coding sequence (CDS) from alignment at scaffold_2:287707..289880-

>mRNA_722 ID=mRNA_722|Name=jgi.p|Nanoce1779_2|573921|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_2:287707..289880- (Nannochloropsis oceanica)
ATGATCTGGCTGGCTGTCCTCGAGGCACGTACCTCGTCATCCATGCCGTC
ATCGGTGCTGGCCGTAGAGAGAGTCGGGCGGCCCCCAGAGATCTGCAGCT
CGTCCCTTTCATCCATTCCTTCCAAGTTCACGTTTTCCTTGCCTTCAACT
GTACAACCATCAGCCTTAAGATACAAATCAATTGGGAAGCGATTTGTTGC
ACAGGTGATTCCCCCGGTGGCTGCCCCTGCTGCTGCTTCTGCTGCTGCTG
CTTCTACTTTCTCGTCCTCGTCTATGTCCTCATCCTCCACCTCCATTTCC
ACCTCGTTGCCGTCCGTGGAATTCAAGCTTACCCTACAAGCCCGACGATG
TCGCGGCAGAAGCATCGGATTGATTATCGATGTTTCTTTCCCTTTCCCCT
TCCTTTGCTTCTCTTTCTCCCCATCGTGTGAGGGTGGTGGGAATAGGGGT
ATACCCCCTGCCGCCATTGCAGAGGATGAGTGCGGCATGGTGACTGCTGC
TGTTGGTATTCTCCTTTCATCGTCCCTCCCCCCTTTCTTCCCCTCCTCCT
GCTGCTGCTGCTGCTGTTGTTGTTGTTGCTGCTGCTGCTCCTGCTGCCCT
TGA
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Synonyms
Publications