jgi.p|Nanoce1779_2|107424, mRNA_7217 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|107424
Unique Name	mRNA_7217
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1856
Alignment location	scaffold_16:595609..597615 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	107510
Track	FilteredModels2
ProteinId	107424

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:595609..597615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|107424	gene_7217	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|107424	mRNA_7217-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7217	CDS_7217	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:595609..597615+
coding sequence from alignment at scaffold_16:595609..597615+

mRNA sequence

>mRNA_7217 ID=mRNA_7217|Name=jgi.p|Nanoce1779_2|107424|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp
CCTCCCGTCTTACTTTCTTCCCTCCAATGCTCCCTATCGGTATTCCTTGG
CATCCACCATCCTCCCTCCCTCCTTCCCTCCTTTCCTCCCTCCAGGCGGG
TTGAGCAGCTTCTATGCAAGCCTTAAGACCAAATACACCACCCCCTCCTC
CCCCCTCTCCTCTTCAATCCCTCCCTCGTCCAATCTCATCACCACCAGCA
TCACCGGCAAGGGAGGGAGGGGGGGAGGAAGGGCAGCACCGCAGGCGTCA
ATGGAAGCCGGGGGTGATATCCTGCTGCGTGACATCTCTTCTTCCCGCGT
CCCTCAGGTCTTCAGCGGTAGTAGCCCCTCCTCCCCTTCCTCCTCTCCTT
CCGCCCCTTCCTCTACCCCCACCTCGCCCTCCTCCCTCCTCCTCCCTTCG
GACATCGCGGCTTTGTCTCTCTCGCTTGGGTCTGGTGGAATCCGTCGTCT
TTCCCCGGGGCGGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGA
GTCTACTATCGTCTTCCTTTCCTTACTCTTCGTTCACGCAGTTGTCGAAG
AAGGGAAGGAAGGAGGCAGGAGTTGAAAGGCTCCTGTCCCCGTCAACGCA
AGGGAGTCGGACGGAGGAGACGAAAGGCGGAGGAGGAAGGGAGGGGGGAG
GAAGGGAGGGAGGAGCAGGTCGTCGAATTTGGGATGGCAGCAACGAAGAA
GAGGAAGGGGAGGACGGTTCCCTCCCTCCCTCCCTCTCTTCCTCCTCTCT
TCCTCCTTCTCTCCACATTTCTCGACGCCGCGAGTCTCTTTTCGGGCAGG
ACGGTGGAGAGGGCGAGGTGGGGGAGGTGGGGGAGGATGAGGAAGGGGAG
GAAGAGGGGGGAAAGGAGGGGCTGCAGTCTCCTTCGCTTCGAACTTGTTC
GTCTCTGCCGGCGTCATGGGAAGCCAACACGGCGATGGCAAAGACGAGGA
CAGGGGGGAGGAGCTGGAGGAGGAAGGGGGTGACAACGGTGGTGGTAGTC
GAGGAGGAGGAGAGGGAGGAAGGGAGGGAGGAAGGGGGGGAGGAAGGGGG
TTGGCGGCGCAGCCATTCTTTCTCAGGTCTGACCCATTTCGAGCACGGAC
TGCTCAAGACCTCCCCCACAACGACAACAGCGGCAGGAGGAGGAGGAGGA
GGAGGAGAAGTGGGGAAGGATGATGGGGAGGAAGAAGGGCAGCGTAGCGC
GGCTCCCACTACGTCTCCTCCTTCTCCTTCTCCGGACTGGGGTCTTGGTC
CCGCTTCCGGCATAGCTGGAGGAAGGGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGCAAAGACGACGCGCATGACGTGCTTTTCGGAGGGAAGAAGAA
AAAAAGGGATGCGTGGTCCATGTCTCGTCTCTATTCGGGAGCCATGGCAG
AAAATATGAAAGGTTTCTCCTCCTCGTCCTCGCTCCCTTCCTCCCTCTCT
CCCTCTTCATCGACGTTTTCCTCCGCGTGGGTGGCATGGGGTCAGAAGGT
GTATAGCGCGGCGACGACGACGAAGGGGGGCAAGGAGGCCCGGCAGGAGG
AAGAGGAAGAGGGAGAAGAGCAGGAAAAGATGACATTTGGTGAGGAGGCG
TCATTCTCGTCAGGTTTAGCAGGGAAGGAGGGAGGGAGGGGAGTGGGGGA
GAAGAAGAAGATCACGTTGCCTCATCCCCTGGCGATGGAAGAGGACGGAT
AGGGTAGGCGTTGTGGAAGGAATAAAATGTATTTTTTGTCTAGAAGCCGA
CTGTCTTGCGGGAAGGGCACTTGTATACATAGAAAGAAGGGCACTTGTAT
ACATAGAAAAAAATAGAAACACCAAGAGAATGTGTGAATGAATGGAGGGG
GTGGGG

protein sequence of jgi.p|Nanoce1779_2|107424

>mRNA_7217-protein ID=mRNA_7217-protein|Name=jgi.p|Nanoce1779_2|107424|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MEAGGDILLRDISSSRVPQVFSGSSPSSPSSSPSAPSSTPTSPSSLLLPS
DIAALSLSLGSGGIRRLSPGREGEREGGREGGRSLLSSSFPYSSFTQLSK
KGRKEAGVERLLSPSTQGSRTEETKGGGGREGGGREGGAGRRIWDGSNEE
EEGEDGSLPPSLSSSSLPPSLHISRRRESLFGQDGGEGEVGEVGEDEEGE
EEGGKEGLQSPSLRTCSSLPASWEANTAMAKTRTGGRSWRRKGVTTVVVV
EEEEREEGREEGGEEGGWRRSHSFSGLTHFEHGLLKTSPTTTTAAGGGGG
GGEVGKDDGEEEGQRSAAPTTSPPSPSPDWGLGPASGIAGGRGRREGGRE
GGSKDDAHDVLFGGKKKKRDAWSMSRLYSGAMAENMKGFSSSSSLPSSLS
PSSSTFSSAWVAWGQKVYSAATTTKGGKEARQEEEEEGEEQEKMTFGEEA
SFSSGLAGKEGGRGVGEKKKITLPHPLAMEEDG*

mRNA from alignment at scaffold_16:595609..597615+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7217 ID=mRNA_7217|Name=jgi.p|Nanoce1779_2|107424|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at scaffold_16:595609..597615+ (Nannochloropsis oceanica)
CCTCCCGTCTTACTTTCTTCCCTCCAATGCTCCCTATCGGTATTCCTTGG
CATCCACCATCCTCCCTCCCTCCTTCCCTCCTTTCCTCCCTCCAGGCGGG
TTGAGCAGCTTCTATGCAAGCCTTAAGACCAAATACACCACCCCCTCCTC
CCCCCTCTCCTCTTCAATCCCTCCCTCGTCCAATCTCATCACCACCAGCA
TCACCGGCAAGGGAGGGAGGGGGGGAGGAAGGGCAGCACCGCAGGCGTCA
ATGGAAGCCGGGGGTGATATCCTGCTGCGTGACAGTGCGTACAAGGAAGG
GAGAGAGGGAAGGAGGGAGGAGAGGAGGGCGGGAGAAATGAAATGTTTAC
TACTTTCAACTCATCCCTCATTTTAACTTGCGTCTTTTATCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCCAGTCTCTTCTTCCCGCG
TCCCTCAGGTCTTCAGCGGTAGTAGCCCCTCCTCCCCTTCCTCCTCTCCT
TCCGCCCCTTCCTCTACCCCCACCTCGCCCTCCTCCCTCCTCCTCCCTTC
GGACATCGCGGCTTTGTCTCTCTCGCTTGGGTCTGGTGGAATCCGTCGTC
TTTCCCCGGGGCGGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGG
AGTCTACTATCGTCTTCCTTTCCTTACTCTTCGTTCACGCAGTTGTCGAA
GAAGGGAAGGAAGGAGGCAGGAGTTGAAAGGCTCCTGTCCCCGTCAACGC
AAGGGAGTCGGACGGAGGAGACGAAAGGCGGAGGAGGAAGGGAGGGGGGA
GGAAGGGAGGGAGGAGCAGGTCGTCGAATTTGGGATGGCAGCAACGAAGA
AGAGGAAGGGGAGGACGGTTCCCTCCCTCCCTCCCTCTCTTCCTCCTCTC
TTCCTCCTTCTCTCCACATTTCTCGACGCCGCGAGTCTCTTTTCGGGCAG
GACGGTGGAGAGGGCGAGGTGGGGGAGGTGGGGGAGGATGAGGAAGGGGA
GGAAGAGGGGGGAAAGGAGGGGCTGCAGTCTCCTTCGCTTCGAACTTGTT
CGTCTCTGCCGGCGTCATGGGAAGCCAACACGGCGATGGCAAAGACGAGG
ACAGGGGGGAGGAGCTGGAGGAGGAAGGGGGTGACAACGGTGGTGGTAGT
CGAGGAGGAGGAGAGGGAGGAAGGGAGGGAGGAAGGGGGGGAGGAAGGGG
GTTGGCGGCGCAGCCATTCTTTCTCAGGTCTGACCCATTTCGAGCACGGA
CTGCTCAAGACCTCCCCCACAACGACAACAGCGGCAGGAGGAGGAGGAGG
AGGAGGAGAAGTGGGGAAGGATGATGGGGAGGAAGAAGGGCAGCGTAGCG
CGGCTCCCACTACGTCTCCTCCTTCTCCTTCTCCGGACTGGGGTCTTGGT
CCCGCTTCCGGCATAGCTGGAGGAAGGGGAAGGAGGGAGGGAGGGAGGGA
GGGAGGGAGCAAAGACGACGCGCATGACGTGCTTTTCGGAGGGAAGAAGA
AAAAAAGGGATGCGTGGTCCATGTCTCGTCTCTATTCGGGAGCCATGGCA
GAAAATATGAAAGGTTTCTCCTCCTCGTCCTCGCTCCCTTCCTCCCTCTC
TCCCTCTTCATCGACGTTTTCCTCCGCGTGGGTGGCATGGGGTCAGAAGG
TGTATAGCGCGGCGACGACGACGAAGGGGGGCAAGGAGGCCCGGCAGGAG
GAAGAGGAAGAGGGAGAAGAGCAGGAAAAGATGACATTTGGTGAGGAGGC
GTCATTCTCGTCAGGTTTAGCAGGGAAGGAGGGAGGGAGGGGAGTGGGGG
AGAAGAAGAAGATCACGTTGCCTCATCCCCTGGCGATGGAAGAGGACGGA
TAGGGTAGGCGTTGTGGAAGGAATAAAATGTATTTTTTGTCTAGAAGCCG
ACTGTCTTGCGGGAAGGGCACTTGTATACATAGAAAGAAGGGCACTTGTA
TACATAGAAAAAAATAGAAACACCAAGAGAATGTGTGAATGAATGGAGGG
GGTGGGG

Coding sequence (CDS) from alignment at scaffold_16:595609..597615+

>mRNA_7217 ID=mRNA_7217|Name=jgi.p|Nanoce1779_2|107424|organism=Nannochloropsis oceanica|type=CDS|length=2904bp|location=Sequence derived from alignment at scaffold_16:595609..597615+ (Nannochloropsis oceanica)
ATGGAAGCCGGGGGTGATATCCTGCTGCGTGACATCTCTTCTTCCCGCGT
CCCTCAGGTCTTCAGCGGTAGTAGCCCCTCCTCCCCTTCCTCCTCTCCTT
CCGCCCCTTCCTCTACCCCCACCTCGCCCTCCTCCCTCCTCCTCCCTTCG
GACATCGCGGCTTTGTCTCTCTCGCTTGGGTCTGGTGGAATCCGTCGTCT
TTCCCCGGGGCGGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGA
GTCTACTATCGTCTTCCTTTCCTTACTCTTCGTTCACGCAGTTGTCGAAG
AAGGGAAGGAAGGAGGCAGGAGTTGAAAGGCTCCTGTCCCCGTCAACGCA
AGGGAGTCGGACGGAGGAGACGAAAGGCGGAGGAGGAAGGGAGGGGGGAG
GAAGGGAGGGAGGAGCAGGTCGTCGAATTTGGGATGGCAGCAACGAAGAA
GAGGAAGGGGAGGACGGTTCCCTCCCTCCCTCCCTCTCTTCCTCCTCTCT
TCCTCCTTCTCTCCACATTTCTCGACGCCGCGAGTCTCTTTTCGGGCAGG
ACGGTGGAGAGGGCGAGGTGGGGGAGGTGGGGGAGGATGAGGAAGGGGAG
GAAGAGGGGGGAAAGGAGGGGCTGCAGTCTCCTTCGCTTCGAACTTGTTC
GTCTCTGCCGGCGTCATGGGAAGCCAACACGGCGATGGCAAAGACGAGGA
CAGGGGGGAGGAGCTGGAGGAGGAAGGGGGTGACAACGGTGGTGGTAGTC
GAGGAGGAGGAGAGGGAGGAAGGGAGGGAGGAAGGGGGGGAGGAAGGGGG
TTGGCGGCGCAGCCATTCTTTCTCAGGTCTGACCCATTTCGAGCACGGAC
TGCTCAAGACCTCCCCCACAACGACAACAGCGGCAGGAGGAGGAGGAGGA
GGAGGAGAAGTGGGGAAGGATGATGGGGAGGAAGAAGGGCAGCGTAGCGC
GGCTCCCACTACGTCTCCTCCTTCTCCTTCTCCGGACTGGGGTCTTGGTC
CCGCTTCCGGCATAGCTGGAGGAAGGGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGCAAAGACGACGCGCATGACGTGCTTTTCGGAGGGAAGAAGAA
AAAAAGGGATGCGTGGTCCATGTCTCGTCTCTATTCGGGAGCCATGGCAG
AAAATATGAAAGGTTTCTCCTCCTCGTCCTCGCTCCCTTCCTCCCTCTCT
CCCTCTTCATCGACGTTTTCCTCCGCGTGGGTGGCATGGGGTCAGAAGGT
GTATAGCGCGGCGACGACGACGAAGGGGGGCAAGGAGGCCCGGCAGGAGG
AAGAGGAAGAGGGAGAAGAGCAGGAAAAGATGACATTTGGTGAGGAGGCG
TCATTCTCGTCAGGTTTAGCAGGGAAGGAGGGAGGGAGGGGAGTGGGGGA
GAAGAAGAAGATCACGTTGCCTCATCCCCTGGCGATGGAAGAGGACGGAT
AGATGGAAGCCGGGGGTGATATCCTGCTGCGTGACATCTCTTCTTCCCGC
GTCCCTCAGGTCTTCAGCGGTAGTAGCCCCTCCTCCCCTTCCTCCTCTCC
TTCCGCCCCTTCCTCTACCCCCACCTCGCCCTCCTCCCTCCTCCTCCCTT
CGGACATCGCGGCTTTGTCTCTCTCGCTTGGGTCTGGTGGAATCCGTCGT
CTTTCCCCGGGGCGGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAG
GAGTCTACTATCGTCTTCCTTTCCTTACTCTTCGTTCACGCAGTTGTCGA
AGAAGGGAAGGAAGGAGGCAGGAGTTGAAAGGCTCCTGTCCCCGTCAACG
CAAGGGAGTCGGACGGAGGAGACGAAAGGCGGAGGAGGAAGGGAGGGGGG
AGGAAGGGAGGGAGGAGCAGGTCGTCGAATTTGGGATGGCAGCAACGAAG
AAGAGGAAGGGGAGGACGGTTCCCTCCCTCCCTCCCTCTCTTCCTCCTCT
CTTCCTCCTTCTCTCCACATTTCTCGACGCCGCGAGTCTCTTTTCGGGCA
GGACGGTGGAGAGGGCGAGGTGGGGGAGGTGGGGGAGGATGAGGAAGGGG
AGGAAGAGGGGGGAAAGGAGGGGCTGCAGTCTCCTTCGCTTCGAACTTGT
TCGTCTCTGCCGGCGTCATGGGAAGCCAACACGGCGATGGCAAAGACGAG
GACAGGGGGGAGGAGCTGGAGGAGGAAGGGGGTGACAACGGTGGTGGTAG
TCGAGGAGGAGGAGAGGGAGGAAGGGAGGGAGGAAGGGGGGGAGGAAGGG
GGTTGGCGGCGCAGCCATTCTTTCTCAGGTCTGACCCATTTCGAGCACGG
ACTGCTCAAGACCTCCCCCACAACGACAACAGCGGCAGGAGGAGGAGGAG
GAGGAGGAGAAGTGGGGAAGGATGATGGGGAGGAAGAAGGGCAGCGTAGC
GCGGCTCCCACTACGTCTCCTCCTTCTCCTTCTCCGGACTGGGGTCTTGG
TCCCGCTTCCGGCATAGCTGGAGGAAGGGGAAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGCAAAGACGACGCGCATGACGTGCTTTTCGGAGGGAAGAAG
AAAAAAAGGGATGCGTGGTCCATGTCTCGTCTCTATTCGGGAGCCATGGC
AGAAAATATGAAAGGTTTCTCCTCCTCGTCCTCGCTCCCTTCCTCCCTCT
CTCCCTCTTCATCGACGTTTTCCTCCGCGTGGGTGGCATGGGGTCAGAAG
GTGTATAGCGCGGCGACGACGACGAAGGGGGGCAAGGAGGCCCGGCAGGA
GGAAGAGGAAGAGGGAGAAGAGCAGGAAAAGATGACATTTGGTGAGGAGG
CGTCATTCTCGTCAGGTTTAGCAGGGAAGGAGGGAGGGAGGGGAGTGGGG
GAGAAGAAGAAGATCACGTTGCCTCATCCCCTGGCGATGGAAGAGGACGG
ATAG

Synonyms

Publications