jgi.p|Nanoce1779_2|107319, mRNA_7215 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|107319
Unique NamemRNA_7215
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length516
Alignment locationscaffold_16:588941..589830 +

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Properties
Property NameValue
TranscriptId107405
TrackFilteredModels2
ProteinId107319
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:588941..589830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|107319gene_7215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|107319mRNA_7215-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7215CDS_7215Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7215 ID=mRNA_7215|Name=jgi.p|Nanoce1779_2|107319|organism=Nannochloropsis oceanica|type=mRNA|length=516bp
ACAGGTATTGCACTCTTACGGGGCTCGAAGACACAGACGTCGAGGACACA
CACAAAGATACACAGACGTCGACTGGCGGTATTGAGCCGAGAGGCAATCG
GAAAGGAGAAGGAAGGAGGAGAAGGGTTTAAGCAAAGGATGAGAGGACGA
TTGCTCAGCACGCTCTTCACATTCCTATGTGGATTTGGTCTCGGGGCCAT
GGGCATGATGGCAGCGTTCGGCTACTTCTACTATAAGTACATCTGGCTCC
TCCAAGAGCCCCCGCCGTCGCCTGAAGAGGAAGAGCAACGGCGGATGGAG
GCCAAAAAGCTGGCAGCTCGTCCTCTTTCCGTTCGCAAGATCCTCGAGTC
GTTGGGTCTGAAGGCGCAAGAGGTGGAGAAAGTGATGAAGACGGGCGGGG
GGCAGGGCAAGGTGAGGGATTGAGGGAGGGAGGGAAGGAGGGAGGGAAGA
CATGCGCAAGAGGGAGTGAGGGAGGGAGGGAAGAAGTTTTCGTATCTTGA
CATGATGCCCGAATAT
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protein sequence of jgi.p|Nanoce1779_2|107319

>mRNA_7215-protein ID=mRNA_7215-protein|Name=jgi.p|Nanoce1779_2|107319|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MRGRLLSTLFTFLCGFGLGAMGMMAAFGYFYYKYIWLLQEPPPSPEEEEQ
RRMEAKKLAARPLSVRKILESLGLKAQEVEKVMKTGGGQGKVRD*
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mRNA from alignment at scaffold_16:588941..589830+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7215 ID=mRNA_7215|Name=jgi.p|Nanoce1779_2|107319|organism=Nannochloropsis oceanica|type=mRNA|length=890bp|location=Sequence derived from alignment at scaffold_16:588941..589830+ (Nannochloropsis oceanica)
ACAGGTATTGCACTCTTACGGGGCTCGAAGACACAGACGTCGAGGACACA
CACAAAGATACACAGACGTCGACTGGCGGTATTGAGCCGAGAGGCAATCG
GAAAGGAGAAGGAAGGAGGAGAAGGGTTTAAGCAAAGGATGAGAGGACGA
TTGCTCAGCACGCTCTTCACATTCCTATGTGGATTTGGTCTCGGGGCCAT
GGGCATGATGGCAGGTAGGGCTGAGCCAAGACGGGTCGTCGGGAGGGAAG
GAGGGAGGAAAGGAGGGAAGGGGTAAAGGGTTGGGACAGGTATTGGTTTC
TGTGTTCAGAGGTGCTCCTCTTTCACATGTTTTCTACTCATATTCTTTTT
TCTGTCCCTCCTCATCATGGCTCTGAGATTGCGAGAGTCTCAACCTCCCT
CCCTCCCTCCCTCCCTCACTTCCTCCCTCCCAGCGTTCGGCTACTTCTAC
TATAAGTACATCTGGCTCCTCCAAGAGCCCCCGCCGTCGCCTGAAGAGGA
AGAGCAACGTGAGGAGGGACGAAGGGAGAGAGGGAGGGAGAAAGGGCGGG
AGGGAGAAAGGGCGGGAGGGTGGGAGGGTGGAGGCCTCTGATCGTCAGGT
CTAACGCACTCAATCTTTTTTACTTTCCCTTCCTTCCTCCCTCCCTCCCT
CCCTCCCTCCCAGGGCGGATGGAGGCCAAAAAGCTGGCAGCTCGTCCTCT
TTCCGTTCGCAAGATCCTCGAGTCGTTGGGTCTGAAGGCGCAAGAGGTGG
AGAAAGTGATGAAGACGGGCGGGGGGCAGGGCAAGGTGAGGGATTGAGGG
AGGGAGGGAAGGAGGGAGGGAAGACATGCGCAAGAGGGAGTGAGGGAGGG
AGGGAAGAAGTTTTCGTATCTTGACATGATGCCCGAATAT
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Coding sequence (CDS) from alignment at scaffold_16:588941..589830+

>mRNA_7215 ID=mRNA_7215|Name=jgi.p|Nanoce1779_2|107319|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_16:588941..589830+ (Nannochloropsis oceanica)
ATGAGAGGACGATTGCTCAGCACGCTCTTCACATTCCTATGTGGATTTGG
TCTCGGGGCCATGGGCATGATGGCAGCGTTCGGCTACTTCTACTATAAGT
ACATCTGGCTCCTCCAAGAGCCCCCGCCGTCGCCTGAAGAGGAAGAGCAA
CGGCGGATGGAGGCCAAAAAGCTGGCAGCTCGTCCTCTTTCCGTTCGCAA
GATCCTCGAGTCGTTGGGTCTGAAGGCGCAAGAGGTGGAGAAAGTGATGA
AGACGGGCGGGGGGCAGGGCAAGGTGAGGGATTGAATGAGAGGACGATTG
CTCAGCACGCTCTTCACATTCCTATGTGGATTTGGTCTCGGGGCCATGGG
CATGATGGCAGCGTTCGGCTACTTCTACTATAAGTACATCTGGCTCCTCC
AAGAGCCCCCGCCGTCGCCTGAAGAGGAAGAGCAACGGCGGATGGAGGCC
AAAAAGCTGGCAGCTCGTCCTCTTTCCGTTCGCAAGATCCTCGAGTCGTT
GGGTCTGAAGGCGCAAGAGGTGGAGAAAGTGATGAAGACGGGCGGGGGGC
AGGGCAAGGTGAGGGATTGAATGAGAGGACGATTGCTCAGCACGCTCTTC
ACATTCCTATGTGGATTTGGTCTCGGGGCCATGGGCATGATGGCAGCGTT
CGGCTACTTCTACTATAAGTACATCTGGCTCCTCCAAGAGCCCCCGCCGT
CGCCTGAAGAGGAAGAGCAACGGCGGATGGAGGCCAAAAAGCTGGCAGCT
CGTCCTCTTTCCGTTCGCAAGATCCTCGAGTCGTTGGGTCTGAAGGCGCA
AGAGGTGGAGAAAGTGATGAAGACGGGCGGGGGGCAGGGCAAGGTGAGGG
ATTGA
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Synonyms
Publications