jgi.p|Nanoce1779_2|596064, mRNA_7214 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596064
Unique NamemRNA_7214
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length976
Alignment locationscaffold_16:584126..586129 -

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Properties
Property NameValue
TranscriptId596150
TrackFilteredModels2
ProteinId596064
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:584126..586129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596064gene_7214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596064mRNA_7214-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7214CDS_7214Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7214 ID=mRNA_7214|Name=jgi.p|Nanoce1779_2|596064|organism=Nannochloropsis oceanica|type=mRNA|length=976bp
CAGCAGAAGCCGGAGGAAGACGTACATGCAGCTATCTTGAACTCATGCCG
GCACGCCAACCGCAGCGGCCATACCACCGACCAGGCCTTGGCCTCCTCCT
GGTGTGTCTACTCAATACCTCCTATGCCTTTTTTCGCCATTCAACCACCA
CCACGCTTGGAAGCAGCAGTATCGTCAGCACTGACGTTGTCCGACAGCAA
CAGAGGGCTATGTGTAACGTGGCTTTAGCGTGCATCTACATCGTCAATTG
GGAGAATTCCACCATTTAGGAGCCGTAGATGACTTATTTTGCTCATTTGA
GCATGAAGACTGCGAAAACGGGGCCGGCAAGAAGAAGCAGGCCTGGACGC
CGCCCGAGAACGAATTCTCACGGACCATCGAGTTGGACGACGTCATGCGC
CGCCCCACCCTCCTCAAGGTACAAGCGAACGAGGAAGAGAGGAGGAAGCT
GGCCGAGCGATTTGAATTTTTAAATCTGCACACGCTGACGGCCAACGTCT
CGATTGCCAGGCCCCATTGGGGGTGCCTCCTTGCGGAGGGAAGCCTCTCC
GCATCACTGGACCGTCACTGCGTAGTAACGGGCGAGCTGTTTCCGTTTGA
ATTTACGACAACGTTTTCCACTTATATCAAGGAGGTGGGCGGTGCCGTCC
CTCTCTACGGGAATAGCCAGCAGGAGGAGTTCGGGCAGGGCGCGAACGAC
ATGGAGGAAGATGACTTTGATGACGAGGTGGAGGCGGGCACCTCCATCGA
CGTGGGCGAGATCGTGGCGCAGTACCTTTATCTTAATATGCCTCCTTACC
CCACCCTTCCTGGGAAGAGCCTCGACGATATTCCTGACGAGGTCGTCTTC
GAATGGGGCTCGGGCGATGGGGAGGAAGGGGGGGAAGGAGGACAGGGGGG
GGGAGGAAAGGCTAAGAAGAAGAAAAAAGAGAGGCCAGGGTGGTGAGGAG
GGAGTATCGGGAGGGAGAGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|596064

>mRNA_7214-protein ID=mRNA_7214-protein|Name=jgi.p|Nanoce1779_2|596064|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MRRPTLLKVQANEEERRKLAERFEFLNLHTLTANVSIARPHWGCLLAEGS
LSASLDRHCVVTGELFPFEFTTTFSTYIKEVGGAVPLYGNSQQEEFGQGA
NDMEEDDFDDEVEAGTSIDVGEIVAQYLYLNMPPYPTLPGKSLDDIPDEV
VFEWGSGDGEEGGEGGQGGGGKAKKKKKERPGW*
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mRNA from alignment at scaffold_16:584126..586129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7214 ID=mRNA_7214|Name=jgi.p|Nanoce1779_2|596064|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp|location=Sequence derived from alignment at scaffold_16:584126..586129- (Nannochloropsis oceanica)
CAGCAGAAGCCGGAGGAAGACGTACATGCAGCTATCTTGAACTCATGCCG
GCACGCCAACCGCAGCGGCCATACCACCGACCAGGCCTTGGCCTCCTCCT
GGTGTGTCTACTCAATACCTCCTATGCCTTTTTTCGCCATTCAACCACCA
CCACGCTTGGAAGCAGCAGTATCGTCAGCACTGACGTTGTCCGACAGCAA
CAGAGGGCTATGTGTAACGTGGCTTTAGCGGTAAGAGAAGGGAAAGAGGG
GGATGCGAAATGTAATGGAAGGGTAGGGCGCTTGTGGGCGGCACCGGGGG
TTGGTCCTCAATGTGTCTTCCTCTTCCTCGTCCTAGTGCATCTACATCGT
CAATTGGGAGAATTCCACCATTTAGGAGCCGTAGATGACTTATTTTGCTC
ATTTGAGCATGAAGACTGCGAAAACGGGGTCAGTATCTCGCGTACTGCGT
CCCCTTCCCCCATCCCACACACGCGTTCATCACTCGCCCCTCACTCCTTT
TCCTCCATCCCACCACCTTCATGTACACACACACAGGCCGGCAAGAAGAA
GCAGGCCTGGACGCCGCCCGAGAACGAATTCTCACGGACCATCGAGTGAG
CACAACACCCTCCCTCCCTCCCTCCCTTTCTCCCTTCCTTCCTCCTTCCC
TTCCTCCCTCCCTCTTCCTTTCCGTTCTGACATTTGTAAAAGATGTGGAG
ACCGTCCATTTTTGAGCTCTGAGACGATTGAAAAAAAAGAGGAAAGTCAC
TGGATGATCTTCATGAACTCCACATTGACCCCGTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCAGGTTGGACGACGTCATGCGCCGCCCCACCCTC
CTCAAGGTACAAGCGAACGAGGAAGAGAGGAGGAAGCTGGCCGAGCGATT
TGAATTTTTAAATCTGCACACGCTGACGGCCAACGTCTCGATTGCCAGGC
CCCATTGGGGGTAAGGAGGGAAGGAGGGAGGGAGGGAGGGAAGGACGACG
AACATGGCGCAAGATTTCGTTTCCCTCATTCTTCCTCGCTACCCTCCCTC
CTTCTCTCTCTCCCTCACTCAGGTGCCTCCTTGCGGAGGGAAGCCTCTCC
GCATCACTGGACCGTCACTGCGTAGTAACGGGCGAGCTGTTTCCGTTTGA
ATTTACGACAACGTTTTCCACTTATATCAAGGTGAGGGAGGACGGGAGGG
CGGGAGGGCGGGAGGGGAGGAAGAAGGGCGGGATGGAGGGAGGGTGGGTT
AGTCGAGAGGTTCTGGGTTTCAGACCACGCGAATCATTCACCTTCTTCAC
GTTGGTCTCGCTACCTTATGTTCTTCCACGATCACCCCATTTCCCACTCA
CTTATTCTTCCCTCCTTCCCTCCCTCCCTCCTTCCCTTCCTCCGTCCCTC
CCTCCCTTCGTCAGGAGGTGGGCGGTGCCGTCCCTCTCTACGGGAATAGC
CAGCAGGAGGAGTTCGGGCAGGGCGCGAACGACATGGAGGAAGATGACTT
TGATGACGAGGTGGAGGTGAGGGAGGGAGGCAGGGAGGGAGGGAGGGAAG
GAGTGAGTGATTGTCAACAACATATCTTCCCACTCTTTCCCCTTCGCACA
CGCATGCGGGCCCCTCTTAAAGACTCCATTTTTTTAAAATACGTCAACCA
AAAAAGTAATACATAATGAATAAAATAAATCAATGAATGAAAAAAAATGA
ATTTCAATCAAATGTAATAAAATCAACAAATCAATCAATGAAAAAACACA
CGCACGCACAGGCGGGCACCTCCATCGACGTGGGCGAGATCGTGGCGCAG
TACCTTTATCTTAATATGCCTCCTTACCCCACCCTTCCTGGGAAGAGCCT
CGACGATATTCCTGACGAGGTCGTCTTCGAATGGGGCTCGGGCGATGGGG
AGGAAGGGGGGGAAGGAGGACAGGGGGGGGGAGGAAAGGCTAAGAAGAAG
AAAAAAGAGAGGCCAGGGTGGTGAGGAGGGAGTATCGGGAGGGAGAGAGG
GAGG
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Coding sequence (CDS) from alignment at scaffold_16:584126..586129-

>mRNA_7214 ID=mRNA_7214|Name=jgi.p|Nanoce1779_2|596064|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_16:584126..586129- (Nannochloropsis oceanica)
GCGGGCACCTCCATCGACGTGGGCGAGATCGTGGCGCAGTACCTTTATCT
TAATATGCCTCCTTACCCCACCCTTCCTGGGAAGAGCCTCGACGATATTC
CTGACGAGGTCGTCTTCGAATGGGGCTCGGGCGATGGGGAGGAAGGGGGG
GAAGGAGGACAGGGGGGGGGAGGAAAGGCTAAGAAGAAGAAAAAAGAGAG
GCCAGGGTGGTGAGAGGTGGGCGGTGCCGTCCCTCTCTACGGGAATAGCC
AGCAGGAGGAGTTCGGGCAGGGCGCGAACGACATGGAGGAAGATGACTTT
GATGACGAGGTGGAGGTGCCTCCTTGCGGAGGGAAGCCTCTCCGCATCAC
TGGACCGTCACTGCGTAGTAACGGGCGAGCTGTTTCCGTTTGAATTTACG
ACAACGTTTTCCACTTATATCAAGATGCGCCGCCCCACCCTCCTCAAGGT
ACAAGCGAACGAGGAAGAGAGGAGGAAGCTGGCCGAGCGATTTGAATTTT
TAAATCTGCACACGCTGACGGCCAACGTCTCGATTGCCAGGCCCCATTGG
GGGCGGGCACCTCCATCGACGTGGGCGAGATCGTGGCGCAGTACCTTTAT
CTTAATATGCCTCCTTACCCCACCCTTCCTGGGAAGAGCCTCGACGATAT
TCCTGACGAGGTCGTCTTCGAATGGGGCTCGGGCGATGGGGAGGAAGGGG
GGGAAGGAGGACAGGGGGGGGGAGGAAAGGCTAAGAAGAAGAAAAAAGAG
AGGCCAGGGTGGTGAGAGGTGGGCGGTGCCGTCCCTCTCTACGGGAATAG
CCAGCAGGAGGAGTTCGGGCAGGGCGCGAACGACATGGAGGAAGATGACT
TTGATGACGAGGTGGAGGTGCCTCCTTGCGGAGGGAAGCCTCTCCGCATC
ACTGGACCGTCACTGCGTAGTAACGGGCGAGCTGTTTCCGTTTGAATTTA
CGACAACGTTTTCCACTTATATCAAGATGCGCCGCCCCACCCTCCTCAAG
GTACAAGCGAACGAGGAAGAGAGGAGGAAGCTGGCCGAGCGATTTGAATT
TTTAAATCTGCACACGCTGACGGCCAACGTCTCGATTGCCAGGCCCCATT
GGGGGCGGGCACCTCCATCGACGTGGGCGAGATCGTGGCGCAGTACCTTT
ATCTTAATATGCCTCCTTACCCCACCCTTCCTGGGAAGAGCCTCGACGAT
ATTCCTGACGAGGTCGTCTTCGAATGGGGCTCGGGCGATGGGGAGGAAGG
GGGGGAAGGAGGACAGGGGGGGGGAGGAAAGGCTAAGAAGAAGAAAAAAG
AGAGGCCAGGGTGGTGAGAGGTGGGCGGTGCCGTCCCTCTCTACGGGAAT
AGCCAGCAGGAGGAGTTCGGGCAGGGCGCGAACGACATGGAGGAAGATGA
CTTTGATGACGAGGTGGAGGTGCCTCCTTGCGGAGGGAAGCCTCTCCGCA
TCACTGGACCGTCACTGCGTAGTAACGGGCGAGCTGTTTCCGTTTGAATT
TACGACAACGTTTTCCACTTATATCAAGATGCGCCGCCCCACCCTCCTCA
AGGTACAAGCGAACGAGGAAGAGAGGAGGAAGCTGGCCGAGCGATTTGAA
TTTTTAAATCTGCACACGCTGACGGCCAACGTCTCGATTGCCAGGCCCCA
TTGGGGGCGGGCACCTCCATCGACGTGGGCGAGATCGTGGCGCAGTACCT
TTATCTTAATATGCCTCCTTACCCCACCCTTCCTGGGAAGAGCCTCGACG
ATATTCCTGACGAGGTCGTCTTCGAATGGGGCTCGGGCGATGGGGAGGAA
GGGGGGGAAGGAGGACAGGGGGGGGGAGGAAAGGCTAAGAAGAAGAAAAA
AGAGAGGCCAGGGTGGTGAGAGGTGGGCGGTGCCGTCCCTCTCTACGGGA
ATAGCCAGCAGGAGGAGTTCGGGCAGGGCGCGAACGACATGGAGGAAGAT
GACTTTGATGACGAGGTGGAGGTGCCTCCTTGCGGAGGGAAGCCTCTCCG
CATCACTGGACCGTCACTGCGTAGTAACGGGCGAGCTGTTTCCGTTTGAA
TTTACGACAACGTTTTCCACTTATATCAAGATGCGCCGCCCCACCCTCCT
CAAGGTACAAGCGAACGAGGAAGAGAGGAGGAAGCTGGCCGAGCGATTTG
AATTTTTAAATCTGCACACGCTGACGGCCAACGTCTCGATTGCCAGGCCC
CATTGGGG
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Synonyms
Publications