jgi.p|Nanoce1779_2|107178, mRNA_7212 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|107178
Unique NamemRNA_7212
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1008
Alignment locationscaffold_16:575698..576795 -

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Properties
Property NameValue
TranscriptId107264
TrackFilteredModels2
ProteinId107178
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:575698..576795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|107178gene_7212Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|107178mRNA_7212-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7212CDS_7212Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7212 ID=mRNA_7212|Name=jgi.p|Nanoce1779_2|107178|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
GGGAGGGAGGGAGGGAGGGAGGGCACGTACTGGAGCATCCCATAGGCTTG
CGCGTTCTCGGGGAGGCGGAGAAGAAGCTTCCAAATGAGAGCTCGATATT
TTGTGGGAAAGGCGCCTGGAGGGGGGGAGGGAGGGTTTCAAGGGGGAGGG
GAAGGAACGCGAAAAGAGCAAGCGGGTGAGGAAGGAGGGAGGGGGCAAAA
GGGGAGAAAGAGTGAGGGAGGGAAGAAGGAAGGAAGGAAGGAAGGGAAGC
AGGGAGGACGGAAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGGCGTAC
CGTGCATCGACAGAATATTCTGGAACTTGCTCTCGAGGTAATCGCTGCCC
TCCTCCTCCTCCTCCTCCTCCCCTTCCTCCTCCCCTCCCCCTCTCCCTCC
CTCCCTGCCTCCCCCTGCTCCTCCCGACGAATGGAGCAATGGCCTCCGAC
TCCCTTCCCATCCCTTCAACCTCGCTGCTGCTATCGAATGCAGTGGGATC
TCATCCTCCTCCTCCTCCTCCTCATCCTCCACCTCCTGCTTCTGCCGCCG
CTGCCGCTGCCGTTGGAAAGCCCCCTCCCCCTCCCTCCCCCCCCCCATCC
CTCTTCTCTCCCCTCGGGAAGATGAGGGAAAGGACGAGGACGAGGCAGCT
GCCGATGACGACCCCAAGACAGCTGTCACTAGATCCGGGCCTGCCCTCCC
TCTCTCCCTCCCTCTCTCCCTCCCTGCCTCCGAGGCTGATGACAGGAAGG
ACGCGGCACTCATGCGAGGACGACGAGGACGACGAGGAGGAGGAAGCGGA
GGCGAGGGGAAACGCTGCCCGCTTTCCGTCCCTCCCTCCCCTTCATCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCCTGGGTTGTGTGAGGGGTTGGACCCGAGGGAGGGATCGCCTG
GAGGGAGGGAAGGAGAGAAGGAGGGAGGAAGGGAGGAAGGGAGGAAGGGA
GAGAAGAA
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protein sequence of jgi.p|Nanoce1779_2|107178

>mRNA_7212-protein ID=mRNA_7212-protein|Name=jgi.p|Nanoce1779_2|107178|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MRARYFVGKAPGGGEGGFQGGGEGTRKEQAGEEGGRGQKGRKSEGGKKEG
RKEGKQGGRKGGREGGREGGAYRASTEYSGTCSRGNRCPPPPPPPPLPPP
LPLSLPPCLPLLLPTNGAMASDSLPIPSTSLLLSNAVGSHPPPPPPHPPP
PASAAAAAAVGKPPPPPSPPPSLFSPLGKMRERTRTRQLPMTTPRQLSLD
PGLPSLSPSLSPSLPPRLMTGRTRHSCEDDEDDEEEEAEARGNAARFPSL
PPLHLLLLLLLLLLPPPPPPPPPPPWVV*
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mRNA from alignment at scaffold_16:575698..576795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7212 ID=mRNA_7212|Name=jgi.p|Nanoce1779_2|107178|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp|location=Sequence derived from alignment at scaffold_16:575698..576795- (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAGGGAGGGCACGTACTGGAGCATCCCATAGGCTTG
CGCGTTCTCGGGGAGGCGGAGAAGAAGCTTCCAAATGAGAGCTCGATATT
TTGTGGGAAAGGCGCCTGGAGGGGGGGAGGGAGGGTTTCAAGGGGGAGGG
GAAGGAACGCGAAAAGAGCAAGCGGGTGAGGAAGGAGGGAGGGGGCAAAA
GGGGAGAAAGAGTGAGGGAGGGAAGAAGGAAGGAAGGAAGGAAGGGAAGC
AGGGAGGACGGAAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGGCGTAC
CGTGCATCGACAGAATATTCTGGAACTTGCTCTCGAGGTAATCGCTGCCC
TCCTCCTCCTCCTCCTCCTCCCCTTCCTCCTCCCCTCCCCCTCTCCCTCC
CTCCCTGCCTCCCCCTGCTCCTCCCGACGAATGGAGCAATGGCCTCCGAC
TCCCTTCCCATCCCTTCAACCTCGCTGCTGCTATCGAATGCAGTGGGATC
TCATCCTCCTCCTCCTCCTCCTCATCCTCCACCTCCTGCTTCTGCCGCCG
CTGCCGCTGCCGTTGGAAAGCCCCCTCCCCCTCCCTCCCCCCCCCCATCC
CTCTTCTCTCCCCTCGGGAAGATGAGGGAAAGGACGAGGACGAGGCAGCT
GCCGATGACGACCCCAAGACAGCTGTCACTAGATCCGGGCCTGCCCTCCC
TCTCTCCCTCCCTCTCTCCCTCCCTGCCTCCGAGGCTGATGACAGGAAGG
ACGCGGCACTCATGCGAGGACGACGAGGACGACGAGGAGGAGGAAGCGGA
GGCGAGGGGAAACGCTGCCCGCTTTCCGTCCCTCCCTCCCCTTCATCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCCTGGGTTGTGTGAGGGGTTGGACCCGAGGGAGGGATCGCCTG
GAGGGAGGGAAGGACAGGGGAGGGAAGGAGGGAGAGAAGGAGGGAAGGAG
GGAGGGGGGGAGGGAGGGGAGGACAGGGCAGGTAAGGAGAGCAGAGGGGA
AGGAGAGAAGGAGGGAGGAAGGGAGGAAGGGAGGAAGGGAGAGAAGAA
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Coding sequence (CDS) from alignment at scaffold_16:575698..576795-

>mRNA_7212 ID=mRNA_7212|Name=jgi.p|Nanoce1779_2|107178|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_16:575698..576795- (Nannochloropsis oceanica)
ATGAGAGCTCGATATTTTGTGGGAAAGGCGCCTGGAGGGGGGGAGGGAGG
GTTTCAAGGGGGAGGGGAAGGAACGCGAAAAGAGCAAGCGGGTGAGGAAG
GAGGGAGGGGGCAAAAGGGGAGAAAGAGTGAGGGAGGGAAGAAGGAAGGA
AGGAAGGAAGGGAAGCAGGGAGGACGGAAGGGAGGGAGGGAAGGAGGGAG
GGAGGGAGGGGCGTACCGTGCATCGACAGAATATTCTGGAACTTGCTCTC
GAGGTAATCGCTGCCCTCCTCCTCCTCCTCCTCCTCCCCTTCCTCCTCCC
CTCCCCCTCTCCCTCCCTCCCTGCCTCCCCCTGCTCCTCCCGACGAATGG
AGCAATGGCCTCCGACTCCCTTCCCATCCCTTCAACCTCGCTGCTGCTAT
CGAATGCAGTGGGATCTCATCCTCCTCCTCCTCCTCCTCATCCTCCACCT
CCTGCTTCTGCCGCCGCTGCCGCTGCCGTTGGAAAGCCCCCTCCCCCTCC
CTCCCCCCCCCCATCCCTCTTCTCTCCCCTCGGGAAGATGAGGGAAAGGA
CGAGGACGAGGCAGCTGCCGATGACGACCCCAAGACAGCTGTCACTAGAT
CCGGGCCTGCCCTCCCTCTCTCCCTCCCTCTCTCCCTCCCTGCCTCCGAG
GCTGATGACAGGAAGGACGCGGCACTCATGCGAGGACGACGAGGACGACG
AGGAGGAGGAAGCGGAGGCGAGGGGAAACGCTGCCCGCTTTCCGTCCCTC
CCTCCCCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCCTGGGTTGTGTGA
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Synonyms
Publications