jgi.p|Nanoce1779_2|596047, mRNA_7209 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596047
Unique NamemRNA_7209
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length740
Alignment locationscaffold_16:564952..566024 +

Link to JBrowse

Properties
Property NameValue
TranscriptId596133
TrackFilteredModels2
ProteinId596047
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:564952..566024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596047gene_7209Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596047mRNA_7209-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7209CDS_7209Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7209 ID=mRNA_7209|Name=jgi.p|Nanoce1779_2|596047|organism=Nannochloropsis oceanica|type=mRNA|length=740bp
TCCTCCCCCACATCCAATCGCCGATGGGCCAGAGGCTGCAATGCGATGAC
CCGCTCTCCCTCCTTCCCTCCCTCCCCCTCCTCATCGTCCTCGTCTTTCC
TTTCTCCTCGTGCTTCTCGTGCCAAAGCCTCTGCTGCCTCTTCCTCCAAC
GTCTTACCCTTTTTCTTCAGCGGTGGGGGTGCACCATGCTCCTCCTTCCT
GCCCTCCTTTGCCCCCTCTTCCTCCCTCCTATTCCAGCGAGGGACTGGCA
CTGCAATCACCATGGGCGGCTTCTCCACCTTCTCCTTCTTCCCGTGCTTG
TCGTCGAGGGAGCGAATATAGTGTGGCTTGGCGCCTTGCTCCGGCCCGTC
CCCTTCCTCGTCCTCGTCCTCGTCCCCTGCCTGCCCTCCAAAAGCACTGA
CGCGTTTCATGTGGTTACTACCTCGGCTTCCAGCACCCCCATTGCGTGCC
CCGGCGCCTCCCACTCCCCCTTTGGCTCCACCTTTCTTGCCACCCAGGGA
TAGGACAAGGCCTGTGCCTGCGCGTGGTCCTCCGTCTCCATTGCTGCCTT
CTACTGCCATATCCATAGGCTCCGCAGCAGTGCTGGTGCCGTCTGACATC
AATGCCACTGCTGCCGGTCGGGACGGGCTGGTATGTCTTGTGGTCTAATG
ATGCTTGCTGCGCGGTGGGAGGCAGGCTTGCGCGTCTTTTGTGTCTTAGA
GGAAAACAGATGCTTTGATATGGTGCACCCTCTTGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|596047

>mRNA_7209-protein ID=mRNA_7209-protein|Name=jgi.p|Nanoce1779_2|596047|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MGQRLQCDDPLSLLPSLPLLIVLVFPFSSCFSCQSLCCLFLQRLTLFLQR
WGCTMLLLPALLCPLFLPPIPARDWHCNHHGRLLHLLLLPVLVVEGANIV
WLGALLRPVPFLVLVLVPCLPSKSTDAFHVVTTSASSTPIACPGASHSPF
GSTFLATQG*
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mRNA from alignment at scaffold_16:564952..566024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7209 ID=mRNA_7209|Name=jgi.p|Nanoce1779_2|596047|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at scaffold_16:564952..566024+ (Nannochloropsis oceanica)
TCCTCCCCCACATCCAATCGCCGATGGGCCAGAGGCTGCAATGCGATGAC
CCGCTCTCCCTCCTTCCCTCCCTCCCCCTCCTCATCGTCCTCGTCTTTCC
TTTCTCCTCGTGCTTCTCGTGCCAAAGCCTCTGCTGCCTCTTCCTCCAAC
GTCTTACCCTTTTTCTTCAGCGGTGGGGGTGCACCATGCTCCTCCTTCCT
GCCCTCCTTTGCCCCCTCTTCCTCCCTCCTATTCCAGCGAGGGACTGGCA
CTGCAATCACCATGGGCGGCTTCTCCACCTTCTCCTTCTTCCCGTGCTTG
TCGTCGAGGGAGCGAATATAGTGTGGCTTGGCGCCTTGCTCCGGCCCGTC
CCCTTCCTCGTCCTCGTCCTCGTCCTGTCGGGAGTGATGAATGGGGTGTG
TGTGTGTGTATTTGTGTGTACGTGTGTGTACACGTGTGTACGTGTGTGTA
CACGTGTGTGTGCGTGTGTGTGTTTGTGTGTGTGTGTGTATGTGTGTGTG
TGTGTGTGTGTGTATGTGTGTGCATCCCTCCTTTCCTCTTTCCACCCCTC
CCTCCCTCCGTCCCTCCCTCCGTACCTACCCCTGCCTGCCCTCCAAAAGC
ACTGACGCGTTTCATGTGGTTACTACCTCGGCTTCCAGCACCCCCATTGC
GTGCCCCGGCGCCTCCCACTCCCCCTTTGGCTCCACCTTTCTTGCCACCC
AGGGATAGGACAAGGCCTGTGCCTGTGTTATGTACGTGGGTCAGATGCAC
GTGTAGTGAGATGAGCGAGGGAGGAAGAAGGGGAGGAAGGAAAGGAGGAG
GGAGGGATGGAGTGAGAGAGGGAGGGAGAATCACACGTGTGGACACAGAC
CTGCGCGTGGTCCTCCGTCTCCATTGCTGCCTTCTACTGCCATATCCATA
GGCTCCGCAGCAGTGCTGGTGCCGTCTGACATCAATGCCACTGCTGCCGG
TCGGGACGGGCTGGTATGTCTTGTGGTCTAATGATGCTTGCTGCGCGGTG
GGAGGCAGGCTTGCGCGTCTTTTGTGTCTTAGAGGAAAACAGATGCTTTG
ATATGGTGCACCCTCTTGCCTGT
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Coding sequence (CDS) from alignment at scaffold_16:564952..566024+

>mRNA_7209 ID=mRNA_7209|Name=jgi.p|Nanoce1779_2|596047|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_16:564952..566024+ (Nannochloropsis oceanica)
ATGGGCCAGAGGCTGCAATGCGATGACCCGCTCTCCCTCCTTCCCTCCCT
CCCCCTCCTCATCGTCCTCGTCTTTCCTTTCTCCTCGTGCTTCTCGTGCC
AAAGCCTCTGCTGCCTCTTCCTCCAACGTCTTACCCTTTTTCTTCAGCGG
TGGGGGTGCACCATGCTCCTCCTTCCTGCCCTCCTTTGCCCCCTCTTCCT
CCCTCCTATTCCAGCGAGGGACTGGCACTGCAATCACCATGGGCGGCTTC
TCCACCTTCTCCTTCTTCCCGTGCTTGTCGTCGAGGGAGCGAATATAGTG
TGGCTTGGCGCCTTGCTCCGGCCCGTCCCCTTCCTCGTCCTCGTCCTCGT
CCCCTGCCTGCCCTCCAAAAGCACTGACGCGTTTCATGTGGTTACTACCT
CGGCTTCCAGCACCCCCATTGCGTGCCCCGGCGCCTCCCACTCCCCCTTT
GGCTCCACCTTTCTTGCCACCCAGGGATAGATGGGCCAGAGGCTGCAATG
CGATGACCCGCTCTCCCTCCTTCCCTCCCTCCCCCTCCTCATCGTCCTCG
TCTTTCCTTTCTCCTCGTGCTTCTCGTGCCAAAGCCTCTGCTGCCTCTTC
CTCCAACGTCTTACCCTTTTTCTTCAGCGGTGGGGGTGCACCATGCTCCT
CCTTCCTGCCCTCCTTTGCCCCCTCTTCCTCCCTCCTATTCCAGCGAGGG
ACTGGCACTGCAATCACCATGGGCGGCTTCTCCACCTTCTCCTTCTTCCC
GTGCTTGTCGTCGAGGGAGCGAATATAGTGTGGCTTGGCGCCTTGCTCCG
GCCCGTCCCCTTCCTCGTCCTCGTCCTCGTCCCCTGCCTGCCCTCCAAAA
GCACTGACGCGTTTCATGTGGTTACTACCTCGGCTTCCAGCACCCCCATT
GCGTGCCCCGGCGCCTCCCACTCCCCCTTTGGCTCCACCTTTCTTGCCAC
CCAGGGATAG
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Synonyms
Publications