jgi.p|Nanoce1779_2|596043, mRNA_7207 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596043
Unique NamemRNA_7207
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length936
Alignment locationscaffold_16:560361..561437 -

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Properties
Property NameValue
TranscriptId596129
TrackFilteredModels2
ProteinId596043
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:560361..561437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596043gene_7207Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596043mRNA_7207-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7207CDS_7207Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7207 ID=mRNA_7207|Name=jgi.p|Nanoce1779_2|596043|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
TTTACACACCAAATACATTACCACAGCGCGTTGCTTTCACAAGTCATGGG
CAAGCGCATGAAACGGAGGCATTTTCCTGGCTTGCCTGTTCGGTGCCTGA
CGAAGGATAGCGAGGAATTCCAACAAACTTGTAACAGGATGTCAGCTCTT
CAAAAAAAGGCCAGGTGGGAGCAGGATGCAAACAGGAGAGAGCGTAAGGG
CACTGCCAACAGCAGCGGGCGGGAGACATTTTTTGACATGACAACGAGCG
ACGACGATGACGATGAGGGTAAAGATGAAAGAGAAGAGGAAGGAGGGGAG
GAGACAGATGATGAGCATTTGCAAATGATGACTGTGGCTAGCCGTGCCGC
TGCCATGGCTGCCGTGGCGGTCACAGCGCCTGGGCCAAGTCCCCTGCTTC
TGCGGTTACCACCGCTGCCTCCTGCTCATCAATCTCTGGCGTTTCTCCCA
CCTCTTCCTCCACCGGCCTTGCCTGTGCCGGCTGTGTCAGTCCCTCGTAA
CTACTCCCTGCAGCCACCTTCGTCGTCATCGTCGTCTTCTTGTGGGACAA
CGACGGCCTCCTCTTCCTCTTCTTCCAGTTCCTCTTCCTCGTCCCAGTAA
GGCGCAGAGATTTGCGACTGATGAGAATGAGGGGGAGAGTGAGGCGCTTA
AGAAGGTTGATACGAGTTGTGGAAAATAGAAGAAAGAAGGGGATGAAATC
AAACATGCTTTCTTGTCTGTGTAAAGACATTCTGCTTGCATCGCGGCCCG
AAAAGTAAACAAGCAGGGGACGATTATAAAATTGGAAATTACTAAGTAAG
TCGAAAAGTATAGGAGAGAAAATAAGTTTGAGAGAGAAGCTACGTATTAA
GTTGCCACAGCATTCTGCCGCCGTACGTCCAGCCCACTAACTAATGCATC
CCACCCTTAATAACAAATAATAAAGATAACGAATGC
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protein sequence of jgi.p|Nanoce1779_2|596043

>mRNA_7207-protein ID=mRNA_7207-protein|Name=jgi.p|Nanoce1779_2|596043|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MGKRMKRRHFPGLPVRCLTKDSEEFQQTCNRMSALQKKARWEQDANRRER
KGTANSSGRETFFDMTTSDDDDDEGKDEREEEGGEETDDEHLQMMTVASR
AAAMAAVAVTAPGPSPLLLRLPPLPPAHQSLAFLPPLPPPALPVPAVSVP
RNYSLQPPSSSSSSSCGTTTASSSSSSSSSSSSQ*
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mRNA from alignment at scaffold_16:560361..561437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7207 ID=mRNA_7207|Name=jgi.p|Nanoce1779_2|596043|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at scaffold_16:560361..561437- (Nannochloropsis oceanica)
TTTACACACCAAATACATTACCACAGCGCGTTGCTTTCACAAGTCATGGG
CAAGCGCATGAAACGGAGGCATTTTCCTGGCTTGCCTGTTCGGTGCCTGA
CGAAGGATAGCGAGGAATTCCAACAAACGTAAGTGTTCGGTTTGAGTTGG
ATTGACTCGGGCTTCCTCCTCCTCCCCTCATCCGCACATCCCTTAAATAG
TTGCTGCTGGCCATGACAATGTCGCGATGCAGGCGTCTCATACATTCGTA
TTCCATGCTTTGCATATAGTTGTAACAGGATGTCAGCTCTTCAAAAAAAG
GCCAGGTGGGAGCAGGATGCAAACAGGAGAGAGCGTAAGGGCACTGCCAA
CAGCAGCGGGCGGGAGACATTTTTTGACATGACAACGAGCGACGACGATG
ACGATGAGGGTAAAGATGAAAGAGAAGAGGAAGGAGGGGAGGAGACAGAT
GATGAGCATTTGCAAATGATGACTGTGGCTAGCCGTGCCGCTGCCATGGC
TGCCGTGGCGGTCACAGCGCCTGGGCCAAGTCCCCTGCTTCTGCGGTTAC
CACCGCTGCCTCCTGCTCATCAATCTCTGGCGTTTCTCCCACCTCTTCCT
CCACCGGCCTTGCCTGTGCCGGCTGTGTCAGTCCCTCGTAACTACTCCCT
GCAGCCACCTTCGTCGTCATCGTCGTCTTCTTGTGGGACAACGACGGCCT
CCTCTTCCTCTTCTTCCAGTTCCTCTTCCTCGTCCCAGTAAGGCGCAGAG
ATTTGCGACTGATGAGAATGAGGGGGAGAGTGAGGCGCTTAAGAAGGTTG
ATACGAGTTGTGGAAAATAGAAGAAAGAAGGGGATGAAATCAAACATGCT
TTCTTGTCTGTGTAAAGACATTCTGCTTGCATCGCGGCCCGAAAAGTAAA
CAAGCAGGGGACGATTATAAAATTGGAAATTACTAAGTAAGTCGAAAAGT
ATAGGAGAGAAAATAAGTTTGAGAGAGAAGCTACGTATTAAGTTGCCACA
GCATTCTGCCGCCGTACGTCCAGCCCACTAACTAATGCATCCCACCCTTA
ATAACAAATAATAAAGATAACGAATGC
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Coding sequence (CDS) from alignment at scaffold_16:560361..561437-

>mRNA_7207 ID=mRNA_7207|Name=jgi.p|Nanoce1779_2|596043|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_16:560361..561437- (Nannochloropsis oceanica)
TTGTAACAGGATGTCAGCTCTTCAAAAAAAGGCCAGGTGGGAGCAGGATG
CAAACAGGAGAGAGCGTAAGGGCACTGCCAACAGCAGCGGGCGGGAGACA
TTTTTTGACATGACAACGAGCGACGACGATGACGATGAGGGTAAAGATGA
AAGAGAAGAGGAAGGAGGGGAGGAGACAGATGATGAGCATTTGCAAATGA
TGACTGTGGCTAGCCGTGCCGCTGCCATGGCTGCCGTGGCGGTCACAGCG
CCTGGGCCAAGTCCCCTGCTTCTGCGGTTACCACCGCTGCCTCCTGCTCA
TCAATCTCTGGCGTTTCTCCCACCTCTTCCTCCACCGGCCTTGCCTGTGC
CGGCTGTGTCAGTCCCTCGTAACTACTCCCTGCAGCCACCTTCGTCGTCA
TCGTCGTCTTCTTGTGGGACAACGACGGCCTCCTCTTCCTCTTCTTCCAG
TTCCTCTTCCTCGTCCCAGTAAATGGGCAAGCGCATGAAACGGAGGCATT
TTCCTGGCTTGCCTGTTCGGTGCCTGACGAAGGATAGCGAGGAATTCCAA
CAAACTTGTAACAGGATGTCAGCTCTTCAAAAAAAGGCCAGGTGGGAGCA
GGATGCAAACAGGAGAGAGCGTAAGGGCACTGCCAACAGCAGCGGGCGGG
AGACATTTTTTGACATGACAACGAGCGACGACGATGACGATGAGGGTAAA
GATGAAAGAGAAGAGGAAGGAGGGGAGGAGACAGATGATGAGCATTTGCA
AATGATGACTGTGGCTAGCCGTGCCGCTGCCATGGCTGCCGTGGCGGTCA
CAGCGCCTGGGCCAAGTCCCCTGCTTCTGCGGTTACCACCGCTGCCTCCT
GCTCATCAATCTCTGGCGTTTCTCCCACCTCTTCCTCCACCGGCCTTGCC
TGTGCCGGCTGTGTCAGTCCCTCGTAACTACTCCCTGCAGCCACCTTCGT
CGTCATCGTCGTCTTCTTGTGGGACAACGACGGCCTCCTCTTCCTCTTCT
TCCAGTTCCTCTTCCTCGTCCCAGTAAATGGGCAAGCGCATGAAACGGAG
GCATTTTCCTGGCTTGCCTGTTCGGTGCCTGACGAAGGATAGCGAGGAAT
TCCAACAAAC
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Synonyms
Publications