jgi.p|Nanoce1779_2|672179, mRNA_7205 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672179
Unique NamemRNA_7205
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length793
Alignment locationscaffold_16:553614..554780 +

Link to JBrowse

Properties
Property NameValue
TranscriptId672265
TrackFilteredModels2
ProteinId672179
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:553614..554780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672179gene_7205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672179mRNA_7205-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7205CDS_7205Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7205 ID=mRNA_7205|Name=jgi.p|Nanoce1779_2|672179|organism=Nannochloropsis oceanica|type=mRNA|length=793bp
ATGGCCTCCACTTCGCTCCGGCGACGCCTTCCCACCCTCCTCTCATCTTC
TGTAGCTTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCT
CCTCCCTTCTTCTCCGTCACACCCCACCCAGCTCCCTTGCTCTTCCCTTT
GCCGCCGCTGCCGCTGCTGCGCGTAGTGGTGCTGTGGCAGCATTTACCAC
CACCTTGCCACGCAGAGGGTTGGAGGAGTTCTTTGACCCGACAAGAGCAC
CGCATGAGCCCGTTCAGGTCGGCCGTGCCTGGACTGCAGACGAGTTGAGA
CGCAAATCCTTCTCAGATCTGCACAAGCTGTGGTATGTCCTATACAAGGA
GCGAAACGTGTTGCTCACCGAGGAGGCGTCTTGTAAGAGGAATCGAGTCA
CCTTGCCTAGTCCCCACCGGAAGACCCTCGTGAGGAAGAGCATGGCAAGG
ATCAAGCTGGTGCTGAAGGAGCGGCAGTTACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAAGAAGAGCAAGGTCAGCAGCTGGAGCAGC
AGAGAGAGCAGCAATAAGAGGGTAGGGGGAGGCGGGGAGTGCATGGAATG
GGAAGCGAGGGGGAGGAGAAGGGCCGAGAGAGTTAGGTGGTAAATTGTGC
ACGAGAAGGAAAAGGGGACGAGACGTCTCTTACATACAGAGGTCGTAATA
GAAGGAAGGAGGAAGGATGGGGTGGAGGCAAAAGAAAATATTACTCAGCG
GTATTGAGAGCATCACACAGAAACCTAGGGTCTCCGCAGTCCG
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protein sequence of jgi.p|Nanoce1779_2|672179

>mRNA_7205-protein ID=mRNA_7205-protein|Name=jgi.p|Nanoce1779_2|672179|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MASTSLRRRLPTLLSSSVASSSSSSSSSSSSSSSSLLLRHTPPSSLALPF
AAAAAAARSGAVAAFTTTLPRRGLEEFFDPTRAPHEPVQVGRAWTADELR
RKSFSDLHKLWYVLYKERNVLLTEEASCKRNRVTLPSPHRKTLVRKSMAR
IKLVLKERQLQQQQQQQQQQQQQQEEQGQQLEQQREQQ*
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mRNA from alignment at scaffold_16:553614..554780+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7205 ID=mRNA_7205|Name=jgi.p|Nanoce1779_2|672179|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at scaffold_16:553614..554780+ (Nannochloropsis oceanica)
ATGGCCTCCACTTCGCTCCGGCGACGCCTTCCCACCCTCCTCTCATCTTC
TGTAGCTTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCT
CCTCCCTTCTTCTCCGTCACACCCCACCCAGCTCCCTTGCTCTTCCCTTT
GCCGCCGCTGCCGCTGCTGCGCGTAGTGGTGCTGTGGCAGCATTTACCAC
CACCTTGCCACGCAGAGGGTTGGAGGAGTTCTTTGACCCGACAAGAGCAC
CGCATGAGCCCGTTCAGGTAGGTCGTTGGTGAGAGGGAGGGAGGGATGAG
AGAAAGGCGTACGACATTGCCACGCCGAGTACTGCCGATATCTCATTTGA
AGAAGCGCACGCTAGTGAGCAGTCAGGAAACGTGATAAAGGGATAGCAGG
AAGTGCAAGCCATGTTTGGAAGTGGCCAGATGAGTCGGATCGAGGGGGGG
GGATGACTTTTCCTCTTCCCCCTCCTTCCACGCACCCTTCCCTTCCATTC
TTTCTTCCCTTCATTCCATCCCTCTCTGAGATGAGCACACTCTTAGTCGT
GGACTAAACTTTTTTTCCCGGCTTTAAATGCTTCAGTACTCCCACTTGTT
GCTCCCTCTTTCCCTCCCCTCCTTCCCCTCCCGCGCTATAGGTCGGCCGT
GCCTGGACTGCAGACGAGTTGAGACGCAAATCCTTCTCAGATCTGCACAA
GCTGTGGTATGTCCTATACAAGGAGCGAAACGTGTTGCTCACCGAGGAGG
CGTCTTGTAAGAGGAATCGAGTCACCTTGCCTAGTCCCCACCGGAAGACC
CTCGTGAGGAAGAGCATGGCAAGGATCAAGCTGGTGCTGAAGGAGCGGCA
GTTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAGAAG
AGCAAGGTCAGCAGCTGGAGCAGCAGAGAGAGCAGCAATAAGAGGGTAGG
GGGAGGCGGGGAGTGCATGGAATGGGAAGCGAGGGGGAGGAGAAGGGCCG
AGAGAGTTAGGTGGTAAATTGTGCACGAGAAGGAAAAGGGGACGAGACGT
CTCTTACATACAGAGGTCGTAATAGAAGGAAGGAGGAAGGATGGGGTGGA
GGCAAAAGAAAATATTACTCAGCGGTATTGAGAGCATCACACAGAAACCT
AGGGTCTCCGCAGTCCG
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Coding sequence (CDS) from alignment at scaffold_16:553614..554780+

>mRNA_7205 ID=mRNA_7205|Name=jgi.p|Nanoce1779_2|672179|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_16:553614..554780+ (Nannochloropsis oceanica)
ATGGCCTCCACTTCGCTCCGGCGACGCCTTCCCACCCTCCTCTCATCTTC
TGTAGCTTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCT
CCTCCCTTCTTCTCCGTCACACCCCACCCAGCTCCCTTGCTCTTCCCTTT
GCCGCCGCTGCCGCTGCTGCGCGTAGTGGTGCTGTGGCAGCATTTACCAC
CACCTTGCCACGCAGAGGGTTGGAGGAGTTCTTTGACCCGACAAGAGCAC
CGCATGAGCCCGTTCAGGTCGGCCGTGCCTGGACTGCAGACGAGTTGAGA
CGCAAATCCTTCTCAGATCTGCACAAGCTGTGGTATGTCCTATACAAGGA
GCGAAACGTGTTGCTCACCGAGGAGGCGTCTTGTAAGAGGAATCGAGTCA
CCTTGCCTAGTCCCCACCGGAAGACCCTCGTGAGGAAGAGCATGGCAAGG
ATCAAGCTGGTGCTGAAGGAGCGGCAGTTACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAAGAAGAGCAAGGTCAGCAGCTGGAGCAGC
AGAGAGAGCAGCAATAAATGGCCTCCACTTCGCTCCGGCGACGCCTTCCC
ACCCTCCTCTCATCTTCTGTAGCTTCCTCCTCCTCCTCCTCCTCCTCCTC
TTCCTCCTCCTCCTCCTCCTCCCTTCTTCTCCGTCACACCCCACCCAGCT
CCCTTGCTCTTCCCTTTGCCGCCGCTGCCGCTGCTGCGCGTAGTGGTGCT
GTGGCAGCATTTACCACCACCTTGCCACGCAGAGGGTTGGAGGAGTTCTT
TGACCCGACAAGAGCACCGCATGAGCCCGTTCAGGTCGGCCGTGCCTGGA
CTGCAGACGAGTTGAGACGCAAATCCTTCTCAGATCTGCACAAGCTGTGG
TATGTCCTATACAAGGAGCGAAACGTGTTGCTCACCGAGGAGGCGTCTTG
TAAGAGGAATCGAGTCACCTTGCCTAGTCCCCACCGGAAGACCCTCGTGA
GGAAGAGCATGGCAAGGATCAAGCTGGTGCTGAAGGAGCGGCAGTTACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAGAAGAGCAAGG
TCAGCAGCTGGAGCAGCAGAGAGAGCAGCAATAA
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Synonyms
Publications