jgi.p|Nanoce1779_2|650573, mRNA_7203 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|650573
Unique NamemRNA_7203
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1137
Alignment locationscaffold_16:547668..549430 -

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Properties
Property NameValue
TranscriptId650659
TrackFilteredModels2
ProteinId650573
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:547668..549430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650573gene_7203Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650573mRNA_7203-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7203CDS_7203Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7203 ID=mRNA_7203|Name=jgi.p|Nanoce1779_2|650573|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
CATGAGAGGCATTGAGGCTCCCTCCCACAATAGCCTCCCCCTGTAACAAG
GGCCCTGAGCATTTTCCTTCATCTTCTTGGTCCTCAGCTCGGCCCTGTAG
AGAATACAAGCCTCTTTGTGGCCAGCAAGCATCGTCAGTTGCGTTGTGTT
GTTGATGGTGTTGTTGTCGTTGGAATGTTGGAGTGAAGAGTATTCTTGTC
ATGAGGTCGATACGGATTATCACACCAGATACACTTTTGTTACGTCTCAT
CCACGCGCATTTAAATCCTCCATTTTCTGCTCTCCTTCTCGTTTCTCACC
TTCGTCCCTACCCACAACCTTGCAGACATGGCACCTTCTCATTCCTCGAG
AAGAAGACCCCAACCCCTCTCCTTCCTCCTTCTCCCGTTCCTCCTCCTCT
TCCTGCTCCCTCACGCTACCCTTGGACAACTCGACACCCTCCTGGGTCTG
CAAGGCCGGGACTTTGTACTCCTCGCCGCTGACCCCGTCCTGAGTCGATC
GCTTCTCCTCCTCCACACCCATCACGACAAGCTCCCTCCCCTCGGGCCGC
ACCACTGCCTGGCCTTGGGAGGGCCTGCGTACTTCACGGAGATAATGAGT
GAAGTCCTAGGGGCAGAAAAAAGACTTTTTGAAAAGAGATTGCGACGGCC
CCTCACAACTATGGCAGTGGCCAACATGGCGAGGAATTTGTTTCTAGAAT
ACGAAGGACTGCCGGTCCGTGTGATGGTGGCGGGATGGGAAGACGAGGGA
GGGAAGGAGGACGAGGACCTAAGTCGTTCACATGCCGCAGAAAATGAGGA
GGCTGGAAGGGAGGCAGGGCAGGACGAAGAGGGAGAAAGTAGACGAAGTG
GAAGACCCCGTCTGTTTTGGCTTGACTCCCTAGGCGCAGTCTCGCCGTTG
CCCTATGCCGCCCACGGGGAAGCGACTGCTTTCCTCATGGCCTTTCTGGA
CCAGCAGTATCACCAGTTGGAGGTGGAGGGAGGGAAGGGGGGGGGGGCTG
AGGGAGGGACGAAAGGAGGGGGTGGAAAAAGGAGGAGGAGACTGCCGTCG
TTGGAGGAGGCAGTGGTGATATTGGAGAGATGCTATGAGGAGCTTGAGAG
GAGATTTCTGGTGAATGCTGGGGGGGGGTTTCAGTGA
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protein sequence of jgi.p|Nanoce1779_2|650573

>mRNA_7203-protein ID=mRNA_7203-protein|Name=jgi.p|Nanoce1779_2|650573|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MAPSHSSRRRPQPLSFLLLPFLLLFLLPHATLGQLDTLLGLQGRDFVLLA
ADPVLSRSLLLLHTHHDKLPPLGPHHCLALGGPAYFTEIMSEVLGAEKRL
FEKRLRRPLTTMAVANMARNLFLEYEGLPVRVMVAGWEDEGGKEDEDLSR
SHAAENEEAGREAGQDEEGESRRSGRPRLFWLDSLGAVSPLPYAAHGEAT
AFLMAFLDQQYHQLEVEGGKGGGAEGGTKGGGGKRRRRLPSLEEAVVILE
RCYEELERRFLVNAGGGFQ*
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mRNA from alignment at scaffold_16:547668..549430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7203 ID=mRNA_7203|Name=jgi.p|Nanoce1779_2|650573|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp|location=Sequence derived from alignment at scaffold_16:547668..549430- (Nannochloropsis oceanica)
CATGAGAGGCATTGAGGCTCCCTCCCACAATAGCCTCCCCCTGTAACAAG
GGCCCTGAGCATTTTCCTTCATCTTCTTGGTCCTCAGCTCGGCCCTGTAG
AGAATACAAGCCTCTTTGTGGCCAGCAAGCATCGTCAGTTGCGTTGTGTT
GTTGATGGTGTTGTTGTCGTTGGAATGTTGGAGTGAAGAGTATTCTTGTC
ATGAGGTCGATACGGATTATCACACCAGATACACTTTTGTTACGTCTCAT
CCACGCGCATTTAAATCCTCCATTTTCTGCTCTCCTTCTCGTTTCTCACC
TTCGTCCCTACCCACAACCTTGCAGACATGGCACCTTCTCATTCCTCGAG
AAGAAGACCCCAACCCCTCTCCTTCCTCCTTCTCCCGTTCCTCCTCCTCT
TCCTGCTCCCTCACGCTACCCTTGGACAACTCGACACCCTCCTGGGTCTG
CAAGGCCGGGACTTTGTACTCCTCGCCGCTGACCCCGTCCTGAGTCGATC
GCTTCTCCTCCTCCACACCCATCACGACAAGCTCCCTCCCCTCGGGCCGC
ACCACTGCCTGGCCTTGGGAGGGCCTGCGTACTTCACGGAGATAATGAGT
GAAGTCCTAGGGGCAGAAAAAAGACTTTTTGAAAAGAGATTGCGACGGCC
CCTCACAACTATGGCAGTGGCCAACATGGCGAGGTAACGCTTCGGTCGTC
CACCCCCTTCCCTCCTCCCTCGCTCCCGACATCCCTGAAAGATGTGCCAT
GATTTCGTACACAGCTCGAACGATTTCGTCACGTTCGACTTTTCTCACCC
TCCTCCCTGCTTCTCTCTCTCCCTCCCTCTCACTACTTTTAGGAATTTGT
TTCTAGAATACGAAGGACTGCCGGTCCGTGTGATGGTGGCGGGATGGGAA
GACGAGGGAGGGAAGGAGGACGAGGACCTAAGTCGTTCACATGCCGCAGA
AAATGAGGAGGCTGGAAGGGAGGCAGGGCAGGACGAAGAGGGAGAAAGTA
GACGAAGTGGAAGACCCCGTCTGTTTTGGCTTGACTCCCTAGGCGCAGTC
TCGCCGTTGCCCTATGCCGCCCACGGGGAAGCGACTGCTTTCCTCATGGC
CTTTCTGGACCAGCAGTATCACCAGTTGGAGGTGGAGGGAGGGAAGGGGG
GGGGGGCTGAGGGAGGGACGAAAGGAGGGGGTGGAAAAAGGAGGAGGAGA
CTGCCGTCGTTGGAGGAGGCAGTGGTGATATTGGAGAGATGCTATGAGGA
GCTTGAGAGGAGATTTCTGGTGAATGCTGGGGGGGGGTTTCAGGTAAAGG
TGATAGATCGGGAGGGAGTAAGGACGTTGGTGTTGCCGTCGACGGGACGG
AAGAGAAAGGCAGAGGAGGAGGGAGGAGGAGGAGGGAGGGTGCCGCCGCC
GGTGGTAGTGAGTGGGGGAATGAAAAGAGGAGGATGAGAGGGGTAGGAGG
CATGCCGAGGGTTGAGAGAGATGGAAAGAGAACAGGGAGAAATGTACAGA
GCCTGGAAAAAGAAACCATACATGAAGAGCAGAAGGGCCAAAAAGTTATT
GATAATGAGGGGAACGATAGCTTTGTTATTTTCGTCGTCGTTCGTTGCCT
GTGATGGGAATGGATGGGCCATGGACCTGCCATTGGAGAGGGGGGTCGAA
GCCGGCGTTGGCCATTGACACTTTCGTGTTCGCCACCCACCCCATCCCTA
TTGCGTCCATTCAATGCGACCAGTCTCTGGCCTGCTTGTTGTCGTGTTTT
TTGTTTTCAGTGA
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Coding sequence (CDS) from alignment at scaffold_16:547668..549430-

>mRNA_7203 ID=mRNA_7203|Name=jgi.p|Nanoce1779_2|650573|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_16:547668..549430- (Nannochloropsis oceanica)
TGAGAATTTGTTTCTAGAATACGAAGGACTGCCGGTCCGTGTGATGGTGG
CGGGATGGGAAGACGAGGGAGGGAAGGAGGACGAGGACCTAAGTCGTTCA
CATGCCGCAGAAAATGAGGAGGCTGGAAGGGAGGCAGGGCAGGACGAAGA
GGGAGAAAGTAGACGAAGTGGAAGACCCCGTCTGTTTTGGCTTGACTCCC
TAGGCGCAGTCTCGCCGTTGCCCTATGCCGCCCACGGGGAAGCGACTGCT
TTCCTCATGGCCTTTCTGGACCAGCAGTATCACCAGTTGGAGGTGGAGGG
AGGGAAGGGGGGGGGGGCTGAGGGAGGGACGAAAGGAGGGGGTGGAAAAA
GGAGGAGGAGACTGCCGTCGTTGGAGGAGGCAGTGGTGATATTGGAGAGA
TGCTATGAGGAGCTTGAGAGGAGATTTCTGGTGAATGCTGGGGGGGGGTT
TCAGATGGCACCTTCTCATTCCTCGAGAAGAAGACCCCAACCCCTCTCCT
TCCTCCTTCTCCCGTTCCTCCTCCTCTTCCTGCTCCCTCACGCTACCCTT
GGACAACTCGACACCCTCCTGGGTCTGCAAGGCCGGGACTTTGTACTCCT
CGCCGCTGACCCCGTCCTGAGTCGATCGCTTCTCCTCCTCCACACCCATC
ACGACAAGCTCCCTCCCCTCGGGCCGCACCACTGCCTGGCCTTGGGAGGG
CCTGCGTACTTCACGGAGATAATGAGTGAAGTCCTAGGGGCAGAAAAAAG
ACTTTTTGAAAAGAGATTGCGACGGCCCCTCACAACTATGGCAGTGGCCA
ACATGGCGAGTGAGAATTTGTTTCTAGAATACGAAGGACTGCCGGTCCGT
GTGATGGTGGCGGGATGGGAAGACGAGGGAGGGAAGGAGGACGAGGACCT
AAGTCGTTCACATGCCGCAGAAAATGAGGAGGCTGGAAGGGAGGCAGGGC
AGGACGAAGAGGGAGAAAGTAGACGAAGTGGAAGACCCCGTCTGTTTTGG
CTTGACTCCCTAGGCGCAGTCTCGCCGTTGCCCTATGCCGCCCACGGGGA
AGCGACTGCTTTCCTCATGGCCTTTCTGGACCAGCAGTATCACCAGTTGG
AGGTGGAGGGAGGGAAGGGGGGGGGGGCTGAGGGAGGGACGAAAGGAGGG
GGTGGAAAAAGGAGGAGGAGACTGCCGTCGTTGGAGGAGGCAGTGGTGAT
ATTGGAGAGATGCTATGAGGAGCTTGAGAGGAGATTTCTGGTGAATGCTG
GGGGGGGGTTTCAGATGGCACCTTCTCATTCCTCGAGAAGAAGACCCCAA
CCCCTCTCCTTCCTCCTTCTCCCGTTCCTCCTCCTCTTCCTGCTCCCTCA
CGCTACCCTTGGACAACTCGACACCCTCCTGGGTCTGCAAGGCCGGGACT
TTGTACTCCTCGCCGCTGACCCCGTCCTGAGTCGATCGCTTCTCCTCCTC
CACACCCATCACGACAAGCTCCCTCCCCTCGGGCCGCACCACTGCCTGGC
CTTGGGAGGGCCTGCGTACTTCACGGAGATAATGAGTGAAGTCCTAGGGG
CAGAAAAAAGACTTTTTGAAAAGAGATTGCGACGGCCCCTCACAACTATG
GCAGTGGCCAACATGGCGAGTGAGAATTTGTTTCTAGAATACGAAGGACT
GCCGGTCCGTGTGATGGTGGCGGGATGGGAAGACGAGGGAGGGAAGGAGG
ACGAGGACCTAAGTCGTTCACATGCCGCAGAAAATGAGGAGGCTGGAAGG
GAGGCAGGGCAGGACGAAGAGGGAGAAAGTAGACGAAGTGGAAGACCCCG
TCTGTTTTGGCTTGACTCCCTAGGCGCAGTCTCGCCGTTGCCCTATGCCG
CCCACGGGGAAGCGACTGCTTTCCTCATGGCCTTTCTGGACCAGCAGTAT
CACCAGTTGGAGGTGGAGGGAGGGAAGGGGGGGGGGGCTGAGGGAGGGAC
GAAAGGAGGGGGTGGAAAAAGGAGGAGGAGACTGCCGTCGTTGGAGGAGG
CAGTGGTGATATTGGAGAGATGCTATGAGGAGCTTGAGAGGAGATTTCTG
GTGAATGCTGGGGGGGGGTTTCAGATGGCACCTTCTCATTCCTCGAGAAG
AAGACCCCAACCCCTCTCCTTCCTCCTTCTCCCGTTCCTCCTCCTCTTCC
TGCTCCCTCACGCTACCCTTGGACAACTCGACACCCTCCTGGGTCTGCAA
GGCCGGGACTTTGTACTCCTCGCCGCTGACCCCGTCCTGAGTCGATCGCT
TCTCCTCCTCCACACCCATCACGACAAGCTCCCTCCCCTCGGGCCGCACC
ACTGCCTGGCCTTGGGAGGGCCTGCGTACTTCACGGAGATAATGAGTGAA
GTCCTAGGGGCAGAAAAAAGACTTTTTGAAAAGAGATTGCGACGGCCCCT
CACAACTATGGCAGTGGCCAACATGGCGAG
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Synonyms
Publications