jgi.p|Nanoce1779_2|106807, mRNA_7201 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|106807
Unique Name	mRNA_7201
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1175
Alignment location	scaffold_16:540410..542020 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	106893
Track	FilteredModels2
ProteinId	106807

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:540410..542020 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|106807	gene_7201	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|106807	mRNA_7201-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7201	CDS_7201	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:540410..542020+
coding sequence from alignment at scaffold_16:540410..542020+

mRNA sequence

>mRNA_7201 ID=mRNA_7201|Name=jgi.p|Nanoce1779_2|106807|organism=Nannochloropsis oceanica|type=mRNA|length=1175bp
GTGCGAAACGATCGACCGAGCTGCGTGCCCTGCAGAGGGTCCTGTGGCAG
AGTTTTGGGGACCTTTCTTCGCCATCTTTCTGCGCACTGGCCTCCTCACA
ACGGCAGAACAATAACAATCGATCGTAATACTGCCGCCGTGTGGCCGTCC
CTATTTCCTCGCTTTGGTACCCGACAAGCCCAGGCACATGTCGACGACCA
AGGGCATTCCGTTGACCTTCCCCTCTTGGCATGATCTGAATGTGAGCGCG
GAGAAGGAGGGGGCGGACCAGGAGAATATGGACGACAACCGTGCTAGCAG
AGGCAGCCACAGCAGTAGCAGCAGCGGTGGCAGCAGCACCAAGTCACCAC
CGTTTTCCGAAGAAAGCAGCATCAGCAAGTCTCTTTCTCCCTCCTCCTCT
TCCAGCGCTCCATCACCACCGTTCCGAATCAATCCGTGTCTCAATCGCCG
CCTGGTGATCCTTCCTGCCTCCCTCCCGTCCTCCTCCTCCTCCTCCCTCT
CCTCCCCCTCCTCCTTTTCCACTTGCCCTCCCCCATGGAAACTCGACGTT
GACGCATTGGTCGTTAATAGTAACGAGACGTTCACTGACCGACAGGGAGT
GAACATGTTCCTCTTTGATGCCGCAGGGCCCACACTCCCTTGGGACTGTC
ACTTGCACGGACGCGTCCGAACAGGCTCGGCAGTGCTGACAAGGGGGGGA
TTGATAAGCCCGAGATACGTCATCCATGCAGTCACGCCGCGGTGGAGTGT
CAGGTACGGGATAGCGGCAGAGAACGCGCTTTACCAGTGCTACCGCGCCG
CTCTATGGGGGGCATGGGAGGTGGGGAGGAGTACGGAGAGCAGCAGCGGC
AACAACAGCAGCCCTTCCGCCTCCTCCCCCCCCCCCCTCCTCCTCCTCCA
AACTTATCAAAAGCATCTGCTTCACAGTCCTCTATCCCGCCCATAAGGGC
TACCCCCCCCTCGACGCGGCCCATATCGCCTTGCGCACGACCCGACGGTT
CATGGAACACTACCCGGAAGCGTTTGACCGGGTGCTCTTTTCTTTTTATT
CGACTGGTACTACGGCTACTGCTGGTGGTGGTGGTGGTGAAGCAGCGGGA
AGGAAAGGAGGGAGGACGAGGACGACTCCAAGGGAGACGAACCACGTCAA
GAGACCCGCCAGAGAGGAGGGGTGC

protein sequence of jgi.p|Nanoce1779_2|106807

>mRNA_7201-protein ID=mRNA_7201-protein|Name=jgi.p|Nanoce1779_2|106807|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSTTKGIPLTFPSWHDLNVSAEKEGADQENMDDNRASRGSHSSSSSGGSS
TKSPPFSEESSISKSLSPSSSSSAPSPPFRINPCLNRRLVILPASLPSSS
SSSLSSPSSFSTCPPPWKLDVDALVVNSNETFTDRQGVNMFLFDAAGPTL
PWDCHLHGRVRTGSAVLTRGGLISPRYVIHAVTPRWSVRYGIAAENALYQ
CYRAALWGAWEVGRSTESSSGNNSSPSASSPPPLLLLQTYQKHLLHSPLS
RP*

mRNA from alignment at scaffold_16:540410..542020+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7201 ID=mRNA_7201|Name=jgi.p|Nanoce1779_2|106807|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp|location=Sequence derived from alignment at scaffold_16:540410..542020+ (Nannochloropsis oceanica)
GTGCGAAACGATCGACCGAGCTGCGTGCCCTGCAGAGGGTCCTGTGGCAG
AGTTTTGGGGACCTTTCTTCGCCATCTTTCTGCGCACTGGCCTCCTCACA
ACGGCAGAACAATAACAATCGATCGTAATACTGCCGCCGTGTGGCCGTCC
CTATTTCCTCGCTTTGGTACCCGACAAGCCCAGGCACATGTCGACGACCA
AGGGCATTCCGTTGACCTTCCCCTCTTGGCATGATCTGAATGTGAGCGCG
GAGAAGGAGGGGGCGGACCAGGAGAATATGGACGACAACCGTGCTAGCAG
AGGCAGCCACAGCAGTAGCAGCAGCGGTGGCAGCAGCACCAAGTCACCAC
CGTTTTCCGAAGAAAGCAGCATCAGCAAGGTCAGTCTAAAAGAGGGCACA
TGTGACTGCGTGGTTTTTGCGAAAATCTAGTCCCTATTCTTTCTCCTCTC
CTCCTATTCCACCATCGGCTTCCCCTCGTATGTAATGCCTAGAGGACGTC
AGGTTGCATGCGATAGTTCTAGGTTTGTAAGACAGCTACGACAGAAAGAA
CTACTCCACCCTCATCCCTTCCTTTCTCTTTCTCTTCTCTCTGTTCCTCA
TTGTACAGTGCTCTCTCTCTCTCTCCCTGCCCAATTACACACACAATAAG
CAGTCTCTTTCTCCCTCCTCCTCTTCCAGCGCTCCATCACCACCGTTCCG
AATCAATCCGTGTCTCAATCGCCGCCTGGTGATCCTTCCTGCCTCCCTCC
CGTCCTCCTCCTCCTCCTCCCTCTCCTCCCCCTCCTCCTTTTCCACTTGC
CCTCCCCCATGGAAACTCGACGTTGACGCATTGGTCGTTAATAGTAACGA
GACGTTCACTGACCGACAGGGAGTGAACATGTTCCTCTTTGATGCCGCAG
GGCCCACACTCCCTTGGGACTGTCACTTGCACGGACGCGTCCGAACAGGC
TCGGCAGTGCTGACAAGGGGGGGATTGATAAGCCCGAGATACGTCATCCA
TGCAGTCACGCCGCGGTGGAGTGTCAGGTCAGAAATGAAGATGGTGGGAA
GGAGGTCTATATATAATAATAATGTGTGTGTATGTGTGGATGGATATTTG
TCCCTTCTCCTTGTTTCTGACCAACCTCCCTCTCTCCTTCTTTCCCTCTC
TCCTTCTTTCCCTCTCTCCCTCTCTTCTCCATTCCTCAGGTACGGGATAG
CGGCAGAGAACGCGCTTTACCAGTGCTACCGCGCCGCTCTATGGGGGGCA
TGGGAGGTGGGGAGGAGTACGGAGAGCAGCAGCGGCAACAACAGCAGCCC
TTCCGCCTCCTCCCCCCCCCCCCTCCTCCTCCTCCAAACTTATCAAAAGC
ATCTGCTTCACAGTCCTCTATCCCGCCCATAAGGGCTACCCCCCCCTCGA
CGCGGCCCATATCGCCTTGCGCACGACCCGACGGTTCATGGAACACTACC
CGGAAGCGTTTGACCGGGTGCTCTTTTCTTTTTATTCGACTGGTACTACG
GCTACTGCTGGTGGTGGTGGTGGTGAAGCAGCGGGAAGGAAAGGAGGGAG
GACGAGGACGACTCCAAGGGAGACGAACCACGTCAAGAGACCCGCCAGAG
AGGAGGGGTGC

Coding sequence (CDS) from alignment at scaffold_16:540410..542020+

>mRNA_7201 ID=mRNA_7201|Name=jgi.p|Nanoce1779_2|106807|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at scaffold_16:540410..542020+ (Nannochloropsis oceanica)
ATGTCGACGACCAAGGGCATTCCGTTGACCTTCCCCTCTTGGCATGATCT
GAATGTGAGCGCGGAGAAGGAGGGGGCGGACCAGGAGAATATGGACGACA
ACCGTGCTAGCAGAGGCAGCCACAGCAGTAGCAGCAGCGGTGGCAGCAGC
ACCAAGTCACCACCGTTTTCCGAAGAAAGCAGCATCAGCAAGTCTCTTTC
TCCCTCCTCCTCTTCCAGCGCTCCATCACCACCGTTCCGAATCAATCCGT
GTCTCAATCGCCGCCTGGTGATCCTTCCTGCCTCCCTCCCGTCCTCCTCC
TCCTCCTCCCTCTCCTCCCCCTCCTCCTTTTCCACTTGCCCTCCCCCATG
GAAACTCGACGTTGACGCATTGGTCGTTAATAGTAACGAGACGTTCACTG
ACCGACAGGGAGTGAACATGTTCCTCTTTGATGCCGCAGGGCCCACACTC
CCTTGGGACTGTCACTTGCACGGACGCGTCCGAACAGGCTCGGCAGTGCT
GACAAGGGGGGGATTGATAAGCCCGAGATACGTCATCCATGCAGTCACGC
CGCGGTGGAGTGTCAGGTACGGGATAGCGGCAGAGAACGCGCTTTACCAG
TGCTACCGCGCCGCTCTATGGGGGGCATGGGAGGTGGGGAGGAGTACGGA
GAGCAGCAGCGGCAACAACAGCAGCCCTTCCGCCTCCTCCCCCCCCCCCC
TCCTCCTCCTCCAAACTTATCAAAAGCATCTGCTTCACAGTCCTCTATCC
CGCCCATAAATGTCGACGACCAAGGGCATTCCGTTGACCTTCCCCTCTTG
GCATGATCTGAATGTGAGCGCGGAGAAGGAGGGGGCGGACCAGGAGAATA
TGGACGACAACCGTGCTAGCAGAGGCAGCCACAGCAGTAGCAGCAGCGGT
GGCAGCAGCACCAAGTCACCACCGTTTTCCGAAGAAAGCAGCATCAGCAA
GTCTCTTTCTCCCTCCTCCTCTTCCAGCGCTCCATCACCACCGTTCCGAA
TCAATCCGTGTCTCAATCGCCGCCTGGTGATCCTTCCTGCCTCCCTCCCG
TCCTCCTCCTCCTCCTCCCTCTCCTCCCCCTCCTCCTTTTCCACTTGCCC
TCCCCCATGGAAACTCGACGTTGACGCATTGGTCGTTAATAGTAACGAGA
CGTTCACTGACCGACAGGGAGTGAACATGTTCCTCTTTGATGCCGCAGGG
CCCACACTCCCTTGGGACTGTCACTTGCACGGACGCGTCCGAACAGGCTC
GGCAGTGCTGACAAGGGGGGGATTGATAAGCCCGAGATACGTCATCCATG
CAGTCACGCCGCGGTGGAGTGTCAGGTACGGGATAGCGGCAGAGAACGCG
CTTTACCAGTGCTACCGCGCCGCTCTATGGGGGGCATGGGAGGTGGGGAG
GAGTACGGAGAGCAGCAGCGGCAACAACAGCAGCCCTTCCGCCTCCTCCC
CCCCCCCCCTCCTCCTCCTCCAAACTTATCAAAAGCATCTGCTTCACAGT
CCTCTATCCCGCCCATAAATGTCGACGACCAAGGGCATTCCGTTGACCTT
CCCCTCTTGGCATGATCTGAATGTGAGCGCGGAGAAGGAGGGGGCGGACC
AGGAGAATATGGACGACAACCGTGCTAGCAGAGGCAGCCACAGCAGTAGC
AGCAGCGGTGGCAGCAGCACCAAGTCACCACCGTTTTCCGAAGAAAGCAG
CATCAGCAAGTCTCTTTCTCCCTCCTCCTCTTCCAGCGCTCCATCACCAC
CGTTCCGAATCAATCCGTGTCTCAATCGCCGCCTGGTGATCCTTCCTGCC
TCCCTCCCGTCCTCCTCCTCCTCCTCCCTCTCCTCCCCCTCCTCCTTTTC
CACTTGCCCTCCCCCATGGAAACTCGACGTTGACGCATTGGTCGTTAATA
GTAACGAGACGTTCACTGACCGACAGGGAGTGAACATGTTCCTCTTTGAT
GCCGCAGGGCCCACACTCCCTTGGGACTGTCACTTGCACGGACGCGTCCG
AACAGGCTCGGCAGTGCTGACAAGGGGGGGATTGATAAGCCCGAGATACG
TCATCCATGCAGTCACGCCGCGGTGGAGTGTCAGGTACGGGATAGCGGCA
GAGAACGCGCTTTACCAGTGCTACCGCGCCGCTCTATGGGGGGCATGGGA
GGTGGGGAGGAGTACGGAGAGCAGCAGCGGCAACAACAGCAGCCCTTCCG
CCTCCTCCCCCCCCCCCCTCCTCCTCCTCCAAACTTATCAAAAGCATCTG
CTTCACAGTCCTCTATCCCGCCCATAA

Synonyms

Publications