jgi.p|Nanoce1779_2|640565, mRNA_7199 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640565
Unique NamemRNA_7199
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length270
Alignment locationscaffold_16:535138..535938 -

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Properties
Property NameValue
TranscriptId640651
TrackFilteredModels2
ProteinId640565
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:535138..535938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640565gene_7199Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640565mRNA_7199-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7199CDS_7199Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7199 ID=mRNA_7199|Name=jgi.p|Nanoce1779_2|640565|organism=Nannochloropsis oceanica|type=mRNA|length=270bp
ATGCCGCGTGTCACCGTCAGTACCGTTTTGGCTGTTGTCGGTGCCGGTAT
TGTGCTTGTCGGGATAGAGGGAGGGAGGGAGGGAGGATGGAGGTGGGTAG
CTATTGTGCATATGGACTCGCTTTCTGGTGAGGCGGCACCATCGAGAAGG
AAAGAAGGAGGAGGGGAGGGGGGGATTGAGGAGGGAGAGGAGGAAGGGGA
AGAGGTGATGGAGGAGGTAGCTTTACATGATGTTGATTTGGAGGCACAGG
CGGAGACGGCTTGTCAATAG
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protein sequence of jgi.p|Nanoce1779_2|640565

>mRNA_7199-protein ID=mRNA_7199-protein|Name=jgi.p|Nanoce1779_2|640565|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MPRVTVSTVLAVVGAGIVLVGIEGGREGGWRWVAIVHMDSLSGEAAPSRR
KEGGGEGGIEEGEEEGEEVMEEVALHDVDLEAQAETACQ*
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mRNA from alignment at scaffold_16:535138..535938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7199 ID=mRNA_7199|Name=jgi.p|Nanoce1779_2|640565|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at scaffold_16:535138..535938- (Nannochloropsis oceanica)
ATGCCGCGTGTCACCGTCAGTACCGTTTTGGCTGGTAGGTGCTGGTGGTG
GATATGAGGGAGGGAGAGGCAGGAAGTAAAATGCAACAGCAAGAGGAAAC
ACGCCAATCACATTTCCTTCACAATATTTCACTCTACTCTAACTCCAGTT
GTCGGTGCCGGTATTGTGCTTGTCGGTATCCTGAGCATTGCCTGTGTCAT
GGCCCGAATGACACTTCTGTGGAGGAATCAGCGTTATGCTTCATTTGGGG
AAAGCAGCCTTCCTACAGCTGCTGATACTGATGACCAATCACAAGAGGAG
GGAAGAAGAGGAGGAAGAAGAGGAGAAGATGGAGGAGGACGAGGACAAGG
GGTGAGCCTTACATCTCTGGCGACCAAGGCGACGATGAAGAAGAATAATA
AAATGGGAGGAGAGGGAGGGGAGGGAGGGATGGCGGGAGAAGGAACGAAA
CGTAGGCCAGCATCACTGGGGAGGGGGAAGACGATGACAATAAGAGAGAA
AGGTGACCCAAAAAACGATTTCTCCTCTTCTTCTCCAACCTCTCCCGCGT
GTTCTTCCTCCACGCTCTCTACCATGCCCTCTTCACTGGCAGGGATAGAG
GGAGGGAGGGAGGGAGGATGGAGGTGGGTAGCTATTGTGCATATGGACTC
GCTTTCTGGTGAGGCGGCACCATCGAGAAGGAAAGAAGGAGGAGGGGAGG
GGGGGATTGAGGAGGGAGAGGAGGAAGGGGAAGAGGTGATGGAGGAGGTA
GCTTTACATGATGTTGATTTGGAGGCACAGGCGGAGACGGCTTGTCAATA
G
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Coding sequence (CDS) from alignment at scaffold_16:535138..535938-

>mRNA_7199 ID=mRNA_7199|Name=jgi.p|Nanoce1779_2|640565|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_16:535138..535938- (Nannochloropsis oceanica)
GGATAGAGGGAGGGAGGGAGGGAGGATGGAGGTGGGTAGCTATTGTGCAT
ATGGACTCGCTTTCTGGTGAGGCGGCACCATCGAGAAGGAAAGAAGGAGG
AGGGGAGGGGGGGATTGAGGAGGGAGAGGAGGAAGGGGAAGAGGTGATGG
AGGAGGTAGCTTTACATGATGTTGATTTGGAGGCACAGGCGGAGACGGCT
TGTCAATAGTTGTCGGTGCCGGTATTGTGCTTGTCGATGCCGCGTGTCAC
CGTCAGTACCGTTTTGGCTGGGATAGAGGGAGGGAGGGAGGGAGGATGGA
GGTGGGTAGCTATTGTGCATATGGACTCGCTTTCTGGTGAGGCGGCACCA
TCGAGAAGGAAAGAAGGAGGAGGGGAGGGGGGGATTGAGGAGGGAGAGGA
GGAAGGGGAAGAGGTGATGGAGGAGGTAGCTTTACATGATGTTGATTTGG
AGGCACAGGCGGAGACGGCTTGTCAATAGTTGTCGGTGCCGGTATTGTGC
TTGTCGATGCCGCGTGTCACCGTCAGTACCGTTTTGGCTGGGATAGAGGG
AGGGAGGGAGGGAGGATGGAGGTGGGTAGCTATTGTGCATATGGACTCGC
TTTCTGGTGAGGCGGCACCATCGAGAAGGAAAGAAGGAGGAGGGGAGGGG
GGGATTGAGGAGGGAGAGGAGGAAGGGGAAGAGGTGATGGAGGAGGTAGC
TTTACATGATGTTGATTTGGAGGCACAGGCGGAGACGGCTTGTCAATAGT
TGTCGGTGCCGGTATTGTGCTTGTCGATGCCGCGTGTCACCGTCAGTACC
GTTTTGGCTG
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Synonyms
Publications