jgi.p|Nanoce1779_2|106518, mRNA_7198 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|106518
Unique NamemRNA_7198
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length560
Alignment locationscaffold_16:532103..532662 +

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Properties
Property NameValue
TranscriptId106604
TrackFilteredModels2
ProteinId106518
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:532103..532662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|106518gene_7198Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|106518mRNA_7198-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7198CDS_7198Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7198 ID=mRNA_7198|Name=jgi.p|Nanoce1779_2|106518|organism=Nannochloropsis oceanica|type=mRNA|length=560bp
GCAGAGGAGGGAGAGCATGTGCTACTCGTCCTGCGACATTCACTCCAGCT
CCAATCGCACGTGCGCTCGGATACTGTGTCTTTAGCTGCACCGTCCGTGG
CCGTTGTCAAGAGCTGATTCAGTCGGCTTCGGGGTTGCCCTTCCGCTACC
CTCCCACACGCCTTCCTTCCGTGCCATGTTCTGCGGAAGGGTCTGGCTAC
TTTTTTTGAAGGAAGTCGCAAGGCTCGCAGCTACGCCTCTTGCGTTCTTG
TCGACCAGGGCCTCCCACACACACAATAATCGACCACCCATCACACGAGT
AGAGAGTCTCGTCTTCCCTATTCTTCATCCCTCCTCCCCATCCTCTCACC
CACCTCTTAGACTCTCTCTCCAACCAAGCCTCTCCTACACACAACGAGTA
TGGCCATGTCTAAGGAGCAGCTGCAGGCTTCCTCCACAGCTTTGCTCACG
CGGGCCGAGGAGGCAGGGTTAACTTTACCAGGTATGTGGCTATTAGGGAG
AAGAGGGAAGAGAAGAGGGAAGGATGAGAAGGAAGGGGGCAACACCATGG
CGCGGTGGGG
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protein sequence of jgi.p|Nanoce1779_2|106518

>mRNA_7198-protein ID=mRNA_7198-protein|Name=jgi.p|Nanoce1779_2|106518|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MFCGRVWLLFLKEVARLAATPLAFLSTRASHTHNNRPPITRVESLVFPIL
HPSSPSSHPPLRLSLQPSLSYTQRVWPCLRSSCRLPPQLCSRGPRRQG*
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mRNA from alignment at scaffold_16:532103..532662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7198 ID=mRNA_7198|Name=jgi.p|Nanoce1779_2|106518|organism=Nannochloropsis oceanica|type=mRNA|length=560bp|location=Sequence derived from alignment at scaffold_16:532103..532662+ (Nannochloropsis oceanica)
GCAGAGGAGGGAGAGCATGTGCTACTCGTCCTGCGACATTCACTCCAGCT
CCAATCGCACGTGCGCTCGGATACTGTGTCTTTAGCTGCACCGTCCGTGG
CCGTTGTCAAGAGCTGATTCAGTCGGCTTCGGGGTTGCCCTTCCGCTACC
CTCCCACACGCCTTCCTTCCGTGCCATGTTCTGCGGAAGGGTCTGGCTAC
TTTTTTTGAAGGAAGTCGCAAGGCTCGCAGCTACGCCTCTTGCGTTCTTG
TCGACCAGGGCCTCCCACACACACAATAATCGACCACCCATCACACGAGT
AGAGAGTCTCGTCTTCCCTATTCTTCATCCCTCCTCCCCATCCTCTCACC
CACCTCTTAGACTCTCTCTCCAACCAAGCCTCTCCTACACACAACGAGTA
TGGCCATGTCTAAGGAGCAGCTGCAGGCTTCCTCCACAGCTTTGCTCACG
CGGGCCGAGGAGGCAGGGTTAACTTTACCAGGTATGTGGCTATTAGGGAG
AAGAGGGAAGAGAAGAGGGAAGGATGAGAAGGAAGGGGGCAACACCATGG
CGCGGTGGGG
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Coding sequence (CDS) from alignment at scaffold_16:532103..532662+

>mRNA_7198 ID=mRNA_7198|Name=jgi.p|Nanoce1779_2|106518|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_16:532103..532662+ (Nannochloropsis oceanica)
ATGTTCTGCGGAAGGGTCTGGCTACTTTTTTTGAAGGAAGTCGCAAGGCT
CGCAGCTACGCCTCTTGCGTTCTTGTCGACCAGGGCCTCCCACACACACA
ATAATCGACCACCCATCACACGAGTAGAGAGTCTCGTCTTCCCTATTCTT
CATCCCTCCTCCCCATCCTCTCACCCACCTCTTAGACTCTCTCTCCAACC
AAGCCTCTCCTACACACAACGAGTATGGCCATGTCTAAGGAGCAGCTGCA
GGCTTCCTCCACAGCTTTGCTCACGCGGGCCGAGGAGGCAGGGTTAA
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Synonyms
Publications