jgi.p|Nanoce1779_2|106472, mRNA_7197 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|106472
Unique NamemRNA_7197
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length827
Alignment locationscaffold_16:528547..530178 +

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Properties
Property NameValue
TranscriptId106558
TrackFilteredModels2
ProteinId106472
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:528547..530178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|106472gene_7197Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|106472mRNA_7197-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7197CDS_7197Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7197 ID=mRNA_7197|Name=jgi.p|Nanoce1779_2|106472|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
CCCTCCTTTTCCTCCCTTCTTATTTTTTACCTCCCCCCTCCTTCCCTCCC
GCCGTCCATCCCTCGCCCTAGATCGAGGAGGCTGAGAAGCAGAAGATGCG
GAACAAGTGCAAGAAGATCGTCGACCACGGGATCAACTGCTTCATTAACC
GACAGCTCATTTATAACTATCCCGAGCAGCTTTTTACCGAGGCAGGGATC
ATGTCCATCGAGCACGCCGACTTCGAAGGCGTGGAGCGCCTCGCCGCCGT
GACAGGAGGAGAAATCGCGTCGACTTTCGACCATCCAGAACTCGTGGCTC
TGGGGGAATGCGACCTGATCGAAGAGATCTTGATCGGGGAGGACAAGCTC
ATTCGTTTCTCCGGATGCAAGAGTGGGGCGGCCTGTTCCGTCGTCCTCCG
CGGGGCCTCGGCCCATCTACTCGACGAGGCAGAGCGGTCACTGCACGATG
CCCTGTGTGTCTTATCGCAGACAGTGAGGGAGACGAGGACCATCCCCGGG
GGGGGGTGTGCGGAGGTGGCGATGGCACAGGCAATTGACGCTCATGTGGC
GTCCACACCGGGGAAAAAGGCGCTGGCCATGGAATCATTCGCAAGAGCCT
TACGCCAGGTGCCTCCCTCCCTCCCTCAGTACCTCCGTCCGTTCCTCTGT
GCCTCCCTCCCTCCCTTCCTTCCTTCCATCCATCATGCCTTCATCCATTC
CTTTCTCCGTTTCTTGTCTTCGAAGTCATTCAGGTTGCTCCTCGCTAAGA
ACTAGAATCGTCGCAAAGTAAGACTCACATCTCTCCCTCATCTCCTCTCT
TCCCTCCTTTCCTCCCTCCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|106472

>mRNA_7197-protein ID=mRNA_7197-protein|Name=jgi.p|Nanoce1779_2|106472|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MRNKCKKIVDHGINCFINRQLIYNYPEQLFTEAGIMSIEHADFEGVERLA
AVTGGEIASTFDHPELVALGECDLIEEILIGEDKLIRFSGCKSGAACSVV
LRGASAHLLDEAERSLHDALCVLSQTVRETRTIPGGGCAEVAMAQAIDAH
VASTPGKKALAMESFARALRQVPPSLPQYLRPFLCASLPPFLPSIHHAFI
HSFLRFLSSKSFRLLLAKN*
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mRNA from alignment at scaffold_16:528547..530178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7197 ID=mRNA_7197|Name=jgi.p|Nanoce1779_2|106472|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp|location=Sequence derived from alignment at scaffold_16:528547..530178+ (Nannochloropsis oceanica)
CCCTCCTTTTCCTCCCTTCTTATTTTTTACCTCCCCCCTCCTTCCCTCCC
GCCGTCCATCCCTCGCCCTAGATCGAGGAGGCTGAGAAGCAGAAGATGCG
GAACAAGTGCAAGAAGATCGTCGACCACGGGATCAACTGCTTCATTAACC
GACAGGTGCGTGCCTTCCCTCCATCCCTTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTT
CCCTCCCTCCCTCCCTCTTGCATCCATCCCTCCTCCTGCTCGGGGCCTAC
GGTATTTACAGCTGCATAACATCAAGGAACAGCCACACACCTTCCCTCTC
TCCCTCCTTCCCTTCCTCCCCACGATTCGTCTTCTCTTTTCCTCATTGTT
TACACCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCAGCTCATTTATAACTATCCCGAGCAGCTTTTTACCGAGGCAGGGATC
ATGTCCATCGAGCACGCCGACTTCGAAGGTACTGGACCCCTCCCTCCCTC
CCTCCCTCCCTCCCTATGTTCACCCATATCACACACCAGGTCTCATCCTC
CCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTAAGGCGTGGAGCGCCTCG
CCGCCGTGACAGGAGGAGAAATCGCGTCGACTTTCGACCATCCAGAACTC
GTGGCTCTGGGGGAATGCGACCTGATCGAAGGTAGCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCATGGCACAAGAAAGACGAGCC
GGGCCGCCAGCTCGGAGGTTGAGTCTGTGGTATCGGGCTCTCACCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCATCATCAGAGAT
CTTGATCGGGGAGGACAAGCTCATTCGTTTCTCCGGATGCAAGAGTGGGG
CGGCCTGTTCCGTCGTCCTCCGCGGGGCCTCGGCCCATCTACTCGACGAG
GCAGAGCGGTCACTGCACGATGCCCTGTGTGTCTTATCGCAGACAGTGAG
GGAGACGAGGACCATCCCCGGGGGGGGGTGTGCGGAGGTGGCGATGGCAC
AGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGTAAATTGGGTGGAGAGGG
CGCAAAAGCAGGCGTTAACGTAAGCGATGGGACATGGAGGGAGGGAGGGA
GAAGGGGAGGGAGGGAGATTCACACATGAAGTCTACCTCCAGGCACGCTG
ACATTTTCTTCCTTCTTCCGCCCTTTCCCTTCCCCCCTCTCCCCTCCCTC
CCTCCCCTCCTCCCTCCCTGCTCGTCTCATTCTAGGCAATTGACGCTCAT
GTGGCGTCCACACCGGGGAAAAAGGCGCTGGCCATGGAATCATTCGCAAG
AGCCTTACGCCAGGTGCCTCCCTCCCTCCCTCAGTACCTCCGTCCGTTCC
TCTGTGCCTCCCTCCCTCCCTTCCTTCCTTCCATCCATCATGCCTTCATC
CATTCCTTTCTCCGTTTCTTGTCTTCGAAGTCATTCAGGTTGCTCCTCGC
TAAGAACTAGAATCGTCGCAAAGTAAGACTCACATCTCTCCCTCATCTCC
TCTCTTCCCTCCTTTCCTCCCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_16:528547..530178+

>mRNA_7197 ID=mRNA_7197|Name=jgi.p|Nanoce1779_2|106472|organism=Nannochloropsis oceanica|type=CDS|length=3300bp|location=Sequence derived from alignment at scaffold_16:528547..530178+ (Nannochloropsis oceanica)
ATGCGGAACAAGTGCAAGAAGATCGTCGACCACGGGATCAACTGCTTCAT
TAACCGACAGCTCATTTATAACTATCCCGAGCAGCTTTTTACCGAGGCAG
GGATCATGTCCATCGAGCACGCCGACTTCGAAGGCGTGGAGCGCCTCGCC
GCCGTGACAGGAGGAGAAATCGCGTCGACTTTCGACCATCCAGAACTCGT
GGCTCTGGGGGAATGCGACCTGATCGAAGAGATCTTGATCGGGGAGGACA
AGCTCATTCGTTTCTCCGGATGCAAGAGTGGGGCGGCCTGTTCCGTCGTC
CTCCGCGGGGCCTCGGCCCATCTACTCGACGAGGCAGAGCGGTCACTGCA
CGATGCCCTGTGTGTCTTATCGCAGACAGTGAGGGAGACGAGGACCATCC
CCGGGGGGGGGTGTGCGGAGGTGGCGATGGCACAGGCAATTGACGCTCAT
GTGGCGTCCACACCGGGGAAAAAGGCGCTGGCCATGGAATCATTCGCAAG
AGCCTTACGCCAGGTGCCTCCCTCCCTCCCTCAGTACCTCCGTCCGTTCC
TCTGTGCCTCCCTCCCTCCCTTCCTTCCTTCCATCCATCATGCCTTCATC
CATTCCTTTCTCCGTTTCTTGTCTTCGAAGTCATTCAGGTTGCTCCTCGC
TAAGAACTAGATGCGGAACAAGTGCAAGAAGATCGTCGACCACGGGATCA
ACTGCTTCATTAACCGACAGCTCATTTATAACTATCCCGAGCAGCTTTTT
ACCGAGGCAGGGATCATGTCCATCGAGCACGCCGACTTCGAAGGCGTGGA
GCGCCTCGCCGCCGTGACAGGAGGAGAAATCGCGTCGACTTTCGACCATC
CAGAACTCGTGGCTCTGGGGGAATGCGACCTGATCGAAGAGATCTTGATC
GGGGAGGACAAGCTCATTCGTTTCTCCGGATGCAAGAGTGGGGCGGCCTG
TTCCGTCGTCCTCCGCGGGGCCTCGGCCCATCTACTCGACGAGGCAGAGC
GGTCACTGCACGATGCCCTGTGTGTCTTATCGCAGACAGTGAGGGAGACG
AGGACCATCCCCGGGGGGGGGTGTGCGGAGGTGGCGATGGCACAGGCAAT
TGACGCTCATGTGGCGTCCACACCGGGGAAAAAGGCGCTGGCCATGGAAT
CATTCGCAAGAGCCTTACGCCAGGTGCCTCCCTCCCTCCCTCAGTACCTC
CGTCCGTTCCTCTGTGCCTCCCTCCCTCCCTTCCTTCCTTCCATCCATCA
TGCCTTCATCCATTCCTTTCTCCGTTTCTTGTCTTCGAAGTCATTCAGGT
TGCTCCTCGCTAAGAACTAGATGCGGAACAAGTGCAAGAAGATCGTCGAC
CACGGGATCAACTGCTTCATTAACCGACAGCTCATTTATAACTATCCCGA
GCAGCTTTTTACCGAGGCAGGGATCATGTCCATCGAGCACGCCGACTTCG
AAGGCGTGGAGCGCCTCGCCGCCGTGACAGGAGGAGAAATCGCGTCGACT
TTCGACCATCCAGAACTCGTGGCTCTGGGGGAATGCGACCTGATCGAAGA
GATCTTGATCGGGGAGGACAAGCTCATTCGTTTCTCCGGATGCAAGAGTG
GGGCGGCCTGTTCCGTCGTCCTCCGCGGGGCCTCGGCCCATCTACTCGAC
GAGGCAGAGCGGTCACTGCACGATGCCCTGTGTGTCTTATCGCAGACAGT
GAGGGAGACGAGGACCATCCCCGGGGGGGGGTGTGCGGAGGTGGCGATGG
CACAGGCAATTGACGCTCATGTGGCGTCCACACCGGGGAAAAAGGCGCTG
GCCATGGAATCATTCGCAAGAGCCTTACGCCAGGTGCCTCCCTCCCTCCC
TCAGTACCTCCGTCCGTTCCTCTGTGCCTCCCTCCCTCCCTTCCTTCCTT
CCATCCATCATGCCTTCATCCATTCCTTTCTCCGTTTCTTGTCTTCGAAG
TCATTCAGGTTGCTCCTCGCTAAGAACTAGATGCGGAACAAGTGCAAGAA
GATCGTCGACCACGGGATCAACTGCTTCATTAACCGACAGCTCATTTATA
ACTATCCCGAGCAGCTTTTTACCGAGGCAGGGATCATGTCCATCGAGCAC
GCCGACTTCGAAGGCGTGGAGCGCCTCGCCGCCGTGACAGGAGGAGAAAT
CGCGTCGACTTTCGACCATCCAGAACTCGTGGCTCTGGGGGAATGCGACC
TGATCGAAGAGATCTTGATCGGGGAGGACAAGCTCATTCGTTTCTCCGGA
TGCAAGAGTGGGGCGGCCTGTTCCGTCGTCCTCCGCGGGGCCTCGGCCCA
TCTACTCGACGAGGCAGAGCGGTCACTGCACGATGCCCTGTGTGTCTTAT
CGCAGACAGTGAGGGAGACGAGGACCATCCCCGGGGGGGGGTGTGCGGAG
GTGGCGATGGCACAGGCAATTGACGCTCATGTGGCGTCCACACCGGGGAA
AAAGGCGCTGGCCATGGAATCATTCGCAAGAGCCTTACGCCAGGTGCCTC
CCTCCCTCCCTCAGTACCTCCGTCCGTTCCTCTGTGCCTCCCTCCCTCCC
TTCCTTCCTTCCATCCATCATGCCTTCATCCATTCCTTTCTCCGTTTCTT
GTCTTCGAAGTCATTCAGGTTGCTCCTCGCTAAGAACTAGATGCGGAACA
AGTGCAAGAAGATCGTCGACCACGGGATCAACTGCTTCATTAACCGACAG
CTCATTTATAACTATCCCGAGCAGCTTTTTACCGAGGCAGGGATCATGTC
CATCGAGCACGCCGACTTCGAAGGCGTGGAGCGCCTCGCCGCCGTGACAG
GAGGAGAAATCGCGTCGACTTTCGACCATCCAGAACTCGTGGCTCTGGGG
GAATGCGACCTGATCGAAGAGATCTTGATCGGGGAGGACAAGCTCATTCG
TTTCTCCGGATGCAAGAGTGGGGCGGCCTGTTCCGTCGTCCTCCGCGGGG
CCTCGGCCCATCTACTCGACGAGGCAGAGCGGTCACTGCACGATGCCCTG
TGTGTCTTATCGCAGACAGTGAGGGAGACGAGGACCATCCCCGGGGGGGG
GTGTGCGGAGGTGGCGATGGCACAGGCAATTGACGCTCATGTGGCGTCCA
CACCGGGGAAAAAGGCGCTGGCCATGGAATCATTCGCAAGAGCCTTACGC
CAGGTGCCTCCCTCCCTCCCTCAGTACCTCCGTCCGTTCCTCTGTGCCTC
CCTCCCTCCCTTCCTTCCTTCCATCCATCATGCCTTCATCCATTCCTTTC
TCCGTTTCTTGTCTTCGAAGTCATTCAGGTTGCTCCTCGCTAAGAACTAG
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Synonyms
Publications