jgi.p|Nanoce1779_2|106347, mRNA_7192 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|106347
Unique NamemRNA_7192
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length781
Alignment locationscaffold_16:513078..514990 -

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Properties
Property NameValue
TranscriptId106433
TrackFilteredModels2
ProteinId106347
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:513078..514990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|106347gene_7192Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|106347mRNA_7192-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7192CDS_7192Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7192 ID=mRNA_7192|Name=jgi.p|Nanoce1779_2|106347|organism=Nannochloropsis oceanica|type=mRNA|length=781bp
TGCTCAACCCCAAGTTCTACGAAGGCATGCTTGCAACCGGCTACGAGGGC
GCGCGTGAGATCACGAAGCGATTGCGCAACACTATGGGCTGGTCGGCCAC
GGCCGGGGAGGTGGACAATTTCATCTACGAGGACGCCAACGACGTCTTCA
TCAAGGACGAGTCCATGCGAGATCGACTCCTGGAGACCAATCCCAACGCC
CTGCGGGACATGGTGACGACGTTTTTGGAGGCCAACGGGCGCGGGTACTG
GGACACCAGCGAGGAGAATCTCGACATTCTTCGTGAACTCTACGAGGAGG
TGGAGGATCGCATCGAAGGGCTCGCGTAAGGAGGAGGGAACCTCCCCCCG
TCCCTCCCTTACATGTCTAGATGTGTCTTTACGTATGTCTTCATGTGCGT
GTGTGCGGCCTGTGTGAGTGAATGTGAGAGTTTATGGGAGTTGCTTCGGT
TTGTCGTACGTGGGAGGGTCCTGCTTTTCGGATTGAGTGATTGGTGTTTG
TCGTACGTGTATTTACTGGCCAAGACAAGAATGAAAATGCAAGGGCTGTC
TGACGATGCGAAAAGTGAGGAATTGCAAGACTCCTCTGCCTCCGAACAGG
ATCGTCCCCTTCCTTTCCTCCCTTTCTCGTGCGTGTGTTTGCTTGAAAAA
GGCACGAAGCCGGGATGGCTTGCGAGATTTTGCCGTCGTAGGGGTCTCCT
AGTTAGATGCGAACGAAAAACACCAAGAGGAAGATAATGAGAGAGCGACG
AAAGGACTGAGCAATTGCAAACGATAACCAA
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protein sequence of jgi.p|Nanoce1779_2|106347

>mRNA_7192-protein ID=mRNA_7192-protein|Name=jgi.p|Nanoce1779_2|106347|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSRCVFTYVFMCVCAACVSECESLWELLRFVVRGRVLLFGLSDWCLSYVY
LLAKTRMKMQGLSDDAKSEELQDSSASEQDRPLPFLPFSCVCLLEKGTKP
GWLARFCRRRGLLVRCERKTPRGR*
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mRNA from alignment at scaffold_16:513078..514990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7192 ID=mRNA_7192|Name=jgi.p|Nanoce1779_2|106347|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp|location=Sequence derived from alignment at scaffold_16:513078..514990- (Nannochloropsis oceanica)
TGCTCAACCCCAAGTTCTACGAAGGTACGACAAACACCTCCCTCTCTCCT
TCCCTCACTCCTTCCGCCTTTTCTGTCCTCTCTCCCCTCCCTCCCTCCCT
TCCTTTATTTCTCGTCGCTCACCCCTTGCATTCCCTCCCTCCCTCCCTCC
CAGGCATGCTTGCAACCGGCTACGAGGGCGCGCGTGAGATCACGAAGCGA
TTGCGCAACACTATGGGCTGGTAAGTGCCCCCAGAAGGGAGGGAAGGAGG
GAAGCGAAGACACGTGGAAACCAACAACCATAGCTCCATAAGTTTGATAG
GGGGATAAATACAAATAGATAATTCTTTTTGCATCTGCATGTCTAGGTCA
CATCTAGGTGGAGCCATTCCCGACTCAATTTCATCCCTCCCTCCCTCCCG
CTCACCCTCTTCCAGGTCGGCCACGGCCGGGGAGGTGGACAATTTCATCT
ACGAGGACGCCAACGACGTCTTCATCAAGGACGAGTCCATGCGAGATCGA
CTCCTGGAGACCAATCCCAACGCCCTGCGGGACATGGTGACGACGTTTTT
GGAGGTGAGGGGGAGGGGAAGGGAGGAAGGACAGCAAGGGGCCCATACCC
TTGTCGGTTACTGTGTCGTGATTTTGAGTTATGTTCGATCGGTGGGACGG
GCTGTTTCATTCTCTTTCTCTCCCCTTCCCGCCCTCCTTCCCTCCCTCCC
TTGCTCTTGTGGGCAGCCTGTTGTTTATTATTATTATTATTATTATTATT
ATTATTTATTTATTATTATTATTTCTTGTCATCCTCCTGTTCTCTCTCCG
TTCCTCCTTTCCTCCCTCTCTCTCCTTCCCTCCCCCAAGCCGCCAGCCGT
TATCGCCACTAGAGCTAGTCATCAGTCTCATCCCTCCTCCCTCCCTCCCT
CCCTCCCTCAGGCCAACGGGCGCGGGTACTGGGACACCAGCGAGGAGAAT
CTCGACATTCTTCGTGAACTCTACGAGGAGGTGGAGGATCGCATCGAAGG
GCTCGCGTAAGGAGGAGGGAACCTCCCCCCGTCCCTCCCTTACATGTCTA
GATGTGTCTTTACGTATGTCTTCATGTGCGTGTGTGCGGCCTGTGTGAGT
GAATGTGAGAGTTTATGTGAGTAGTGGGGGGAAGGGGAAGGAGCGAGAGA
AATTAGAGAATTGAAAGGGGAGTTGCTTCGGTTTGTCGTACGTGGGAGGG
TCCTGCTTTTCGGATTGAGTGATTGGTGTTTGTCGTACGTGTATTTACTG
GCCAAGACAAGAATGAAAATGCAAGGGCTGTCTGACGATGCGAAAAGTGA
GGAATTGCAAGACTCCTCTGCCTCCGAACAGGATCGTCCCCTTCCTTTCC
TCCCTTTCTCGTGCGTGTGTTTGCTTGAAAAAGGCACGAAGCCGGGATGG
CTTGCGAGATTTTGCCGTCGTAGGGGTCTCCTAGTTAGATGCGAACGAAA
AACACCAAGAGGAAGATAATGAGAGAGCGACGAAAGGACTGGTAAGCTAG
AGCATGGTAAAGTTAGGAGGATGGAGGCAAGATAATCAGATAGAGAGATA
AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGCGAGAGAGATTGAGAGAGAGATTGAGAGACGAGATGGATATTGAG
AGACGAGATGATGACGAACAAAAGAAAGAAGAACGAAATAGCAGTAAAGG
GGTTAAAAATGGGAGGGACAAAGAGAAGGACATGCGCGGCAGAAGGACAT
GCGCGGCGGTGACCTATGCACAAGAGATTGAAGAGAAGAGAAAGATGGGG
AACGTGCATTTACTCATCTACATATATATCTATATACATATATATACACG
CCCGTCACCATCACCACCATCGTCACCACCATACGAAATAGAGCAATTGC
AAACGATAACCAA
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Coding sequence (CDS) from alignment at scaffold_16:513078..514990-

>mRNA_7192 ID=mRNA_7192|Name=jgi.p|Nanoce1779_2|106347|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_16:513078..514990- (Nannochloropsis oceanica)
GGGAGTTGCTTCGGTTTGTCGTACGTGGGAGGGTCCTGCTTTTCGGATTG
AGTGATTGGTGTTTGTCGTACGTGTATTTACTGGCCAAGACAAGAATGAA
AATGCAAGGGCTGTCTGACGATGCGAAAAGTGAGGAATTGCAAGACTCCT
CTGCCTCCGAACAGGATCGTCCCCTTCCTTTCCTCCCTTTCTCGTGCGTG
TGTTTGCTTGAAAAAGGCACGAAGCCGGGATGGCTTGCGAGATTTTGCCG
TCGTAGGGGTCTCCTAGTTAGATGCGAACGAAAAACACCAAGAGGAAGAT
AAATGTCTAGATGTGTCTTTACGTATGTCTTCATGTGCGTGTGTGCGGCC
TGTGTGAGTGAATGTGAGAGTTTATGGGAGTTGCTTCGGTTTGTCGTACG
TGGGAGGGTCCTGCTTTTCGGATTGAGTGATTGGTGTTTGTCGTACGTGT
ATTTACTGGCCAAGACAAGAATGAAAATGCAAGGGCTGTCTGACGATGCG
AAAAGTGAGGAATTGCAAGACTCCTCTGCCTCCGAACAGGATCGTCCCCT
TCCTTTCCTCCCTTTCTCGTGCGTGTGTTTGCTTGAAAAAGGCACGAAGC
CGGGATGGCTTGCGAGATTTTGCCGTCGTAGGGGTCTCCTAGTTAGATGC
GAACGAAAAACACCAAGAGGAAGATAAATGTCTAGATGTGTCTTTACGTA
TGTCTTCATGTGCGTGTGTGCGGCCTGTGTGAGTGAATGTGAGAGTTTAT
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Synonyms
Publications