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Properties
| Property Name | Value |
|---|
| TranscriptId | 672255 |
| Track | FilteredModels2 |
| ProteinId | 672169 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:506135..508724 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7190 ID=mRNA_7190|Name=jgi.p|Nanoce1779_2|672169|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp
ACAGGGCGAGAGGCCTCCATCAGCGGTAGCGCTGCCCCCTGGATGCATGG
CCGACGACCCTGCCCCTTCCTCCCTCCCTGTACCATTACTCCCCCCGTCA
AACCAGGGGTCTACACCCCGGCCTGCCCTCCAGTCCCCTCCCCCGGCCAC
TGAGCCAACAACACCAGAGCAGCAACAGCCCCCTCCTCCGTCTCCTGTAC
CTATTAGCCCTTCTCCTCCCCTTCAACAACAAGTCCACGCCATGGAGGCC
CAGCTTCTAAAATTTAAGCGCCTCCTGACAATGTCCCGCGAACGCCTCGA
GGAAAACCAGCGCCAATTAAGCGACAAAAATCAGACCATCGACCGCCTCA
CCCGCGAAGTCGATACTATAAAAAGCAAGCTCTCACGGTCCCAAACCCAG
ACAACCGAACAAACCCAAGCTGCCGCTGCCGCCATTGCAGCGCTCAAGCA
ATTGCAACAGCAGCAGCAACAGCAGCAGCACCAGAAGAATCAGCAGCAGA
AGCATCAACAACAGCGACAGCAGCGAGAGAGGGGGGAAGAGAAGATGGGT
GACCCCCCAGTGGCGGTCGAAGTACCACCACGACGGGCATTGCTGCGCGT
GCAGCAGGACAATTTGATTTGGGTGTTGTTCGAAAAAGATGAACCGCCTA
AAGGCAGCAGCAGTAGCAGCAGCAACAGCAGCAACGGTGACAAGCACCAC
TCTTTGGGTCTAGCTTGGAAATCGTTTGCGTGCGAGGAGGATCTTGCGGG
CCACATAGCCCGGGGGCCCGGGCAGGAGCCTCTCCTTCTCCCTTCTCCTT
GCTTGTCGCCTCAACAGTCTACTCGTCTGTCGCTGGAGGCACAAGGACGG
GTGGACCAGCTACAGGAGGAGCTACGGAAATATAGGGTGCGGTCAGAGCT
GGCCATCCGCCAAAAAGACGCCGAGATCAAACACCTCTCTGCGGCGGCTC
TCGCAGCCCAACAACACAAGATCGACAATGAGGCCCCCGACGAGGAAGAG
CTGAAAAGAACTGTCAAACAACAGGCCGACAAAATTCAAGCTTTGAAAAC
TGAGCTCAACGAGCAAGAGGGGAAATGGCGCGTACAGTATCAACAGCTAC
AAAAAGAGAAGGAAGCCTTGGAAGGAGCAGGCGCTGAAACGGCCCTAGCT
GCCCAATGGAGGAAGAGGTATGAAAGTCTCGTCAAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAAGGCAGGCACGATGAAGGACAGGGAGGGCATCGAT
TAAGCTTGTCCGGCTCTGGGCCAGTGGAAGAGAGATATAATGAATTAAAG
GAGGAGTACAGATTGTACCGTAAAAAAGCTTTGGAAGCCCTGAAAGAGAA
GGACTCTCTCATCTCCATCTTGGACAAGGAGAGCGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGGGCTAGGTGGGATGGAGGGAGGGGTGTTTCTGTAGGG
GGAGGGCTGGAGGGAGGGATTTTGGTGTATTTGAAAAATCTGACAGAGAA
GTATTTCAGCACGGAGAGTGGGGAGATTCGGGAGCACACAGAAAGAGCCA
TGTGTGCGGTGTTAGGCTTTAAGGAAGAAGAGGTGAAGCGGATGAAGGCT
TTGAGGGCGGGGGGAAAGGCGTAGAGGAGGAGGAAGAGGAAGAGGAAGAG
GAGACACTCCCGATAACGTTAATGCGAGGCTTCTGCAACGGTTGTTTTTT
CGGCGTTGATTGACTTTTGTGCCTTGGCCTAGGAGGCGTTGAGGTGAGGG
GGAAAGGAGAGTTGAAATGAGTTTCACTACCTAATGTGGATGGGTAGGAA
AGAGAAGAAGAGTTGACAGAGAGAAAGTCGAATGGATGAATTTTCCTGTC
TTTTCTGTGAGTCCCGAGACGGCTAGGCAAGGAGGGGATAAGTGGAGACT
GAACTAGCACCGCCACCACCAGAGGATCAGTGTAACGACAAACCACCCAC
CACTACCAGCAGAAGAAAAAAAAAAAGGAGGAGAAGGGCAAATGCTTGGA
CGGGCGACTACTGGGGCTGACCAGTAGAGGGATTGGAAGAAGGGGGTGTG
GTGAGAGATAAAATTGATATGTGGAGAGATAGGGAATGATATGTCGTCTT
CGACTTTTTGTTGGAGAGAGAATTCGAGTGAGAGAGAAGAAGGGAGGAAA
AGAATTGCCAGCGATCGAAACGACCAAAGAAAGAAACATTAGAATAGAGA
CAAG back to topprotein sequence of jgi.p|Nanoce1779_2|672169 >mRNA_7190-protein ID=mRNA_7190-protein|Name=jgi.p|Nanoce1779_2|672169|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MADDPAPSSLPVPLLPPSNQGSTPRPALQSPPPATEPTTPEQQQPPPPSP
VPISPSPPLQQQVHAMEAQLLKFKRLLTMSRERLEENQRQLSDKNQTIDR
LTREVDTIKSKLSRSQTQTTEQTQAAAAAIAALKQLQQQQQQQQHQKNQQ
QKHQQQRQQRERGEEKMGDPPVAVEVPPRRALLRVQQDNLIWVLFEKDEP
PKGSSSSSSNSSNGDKHHSLGLAWKSFACEEDLAGHIARGPGQEPLLLPS
PCLSPQQSTRLSLEAQGRVDQLQEELRKYRVRSELAIRQKDAEIKHLSAA
ALAAQQHKIDNEAPDEEELKRTVKQQADKIQALKTELNEQEGKWRVQYQQ
LQKEKEALEGAGAETALAAQWRKRYESLVKQQQQQQQQQQGRHDEGQGGH
RLSLSGSGPVEERYNELKEEYRLYRKKALEALKEKDSLISILDKESGGGG
GGGGGGARWDGGRGVSVGGGLEGGILVYLKNLTEKYFSTESGEIREHTER
AMCAVLGFKEEEVKRMKALRAGGKA* back to topmRNA from alignment at scaffold_16:506135..508724- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7190 ID=mRNA_7190|Name=jgi.p|Nanoce1779_2|672169|organism=Nannochloropsis oceanica|type=mRNA|length=2590bp|location=Sequence derived from alignment at scaffold_16:506135..508724- (Nannochloropsis oceanica)
ACAGGGCGAGAGGCCTCCATCAGCGGTAGCGCTGCCCCCTGGATGCATGG
CCGACGACCCTGCCCCTTCCTCCCTCCCTGTACCATTACTCCCCCCGTCA
AACCAGGGGTCTACACCCCGGCCTGCCCTCCAGTCCCCTCCCCCGGCCAC
TGAGCCAACAACACCAGAGCAGCAACAGCCCCCTCCTCCGTCTCCTGTAC
CTATTAGCCCTTCTCCTCCCCTTCAACAACAAGTCCACGCCATGGAGGCC
CAGCTTCTAAAATTTAAGCGCCTCCTGACAATGTCCCGCGAACGCCTCGA
GGAAAACCAGCGCCAATTAAGCGACAAAAATCAGACCATCGACCGCCTCA
CCCGCGAAGTCGATACTATAAAAAGCAAGCTCTCACGGTCCCAAACCCAG
ACAACCGAACAAACCCAAGCTGCCGCTGCCGCCATTGCAGCGCTCAAGCA
ATTGCAACAGCAGCAGCAACAGCAGCAGCACCAGAAGAATCAGCAGCAGA
AGCATCAACAACAGCGACAGCAGCGAGAGAGGGGGGAAGAGAAGATGGGT
GACCCCCCAGTGGCGGTCGAAGTACCACCACGACGGGCATTGCTGCGCGT
GCAGCAGGACAATTTGATTTGGGTGTTGTTCGAAAAAGATGAACCGCCTA
AAGGCAGCAGCAGTAGCAGCAGCAACAGCAGCAACGGTGACAAGCACCAC
TCTTTGGGTCTAGCTTGGAAATCGTTTGCGTGCGAGGAGGATCTTGCGGG
CCACATAGCCCGGGGGCCCGGGCAGGAGCCTCTCCTTCTCCCTTCTCCTT
GCTTGTCGCCTCAACAGTCTACTCGTCTGTCGCTGGAGGCACAAGGACGG
GTGGACCAGCTACAGGAGGAGCTACGGTACGTCCTTCATCTCCTTTTTTT
CCTTCGTCACTTCTTCCTTCCCCCTCTCCTCCTTGCTTGCCGGCAGACGA
ATGTGTCTGCGTTGTCTATGTTTTAAACCTTTGCTCCTCCTGCTCCTCCT
CCTCCTGCTAATCCACCTGCCATCACTCACTCAAGCTTCCTCCCTCTCTC
GTTTTCTCCTTCCCTCTCTCCCTCCCTGCCTCGCTCCCTCAGGAAATATA
GGGTGCGGTCAGAGCTGGCCATCCGCCAAAAAGACGCCGAGATCAAACAC
CTCTCTGCGGCGGCTCTCGCAGCCCAACAACACAAGATCGACAATGAGGC
CCCCGACGAGGAAGAGCTGAAAAGAACTGTCAAACAACAGGTAAGTCCTC
CCTCCCTCCCCCCTCTCCTCTCTCCGTGAAATCCCAAGCAGCAGCTTTGA
AATCCTTTTTCCAAATCACTTTCCCTCCTTCCTTCTTCCCTCCCTCCCTC
CCTCCTTCCCTCCTTCAGGCCGACAAAATTCAAGCTTTGAAAACTGAGCT
CAACGAGCAAGAGGGGAAATGGCGCGTACAGTATCAACAGCTACAAAAAG
AGAAGGAAGCCTTGGAAGGAGCAGGCGCTGAAACGGCCCTAGCTGCCCAA
TGGAGGAAGAGGTATGAAAGTCTCGTCAAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAAGGCAGGCACGATGAAGGACAGGGAGGGCATCGATTAAGCT
TGTCCGGCTCTGGGCCAGTGGAAGAGAGATATAATGAATTAAAGGAGGAG
TACAGATTGTACCGTAAAAAAGCTTTGGAAGCCCTGAAAGAGAAGGACTC
TCTCATCTCCATCTTGGACAAGGAGAGCGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGGGCTAGGTGGGATGGAGGGAGGGGTGTTTCTGTAGGGGGAGGG
CTGGAGGGAGGGATTTTGGTGTATTTGAAAAATCTGACAGAGAAGTATTT
CAGCACGGAGAGTGGGGAGATTCGGGAGCACACAGAAAGAGCCATGTGTG
CGGTGTTAGGCTTTAAGGAAGAAGAGGTGAAGCGGATGAAGGCTTTGAGG
GCGGGGGGAAAGGCGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGACACTCCCGAT
AACGTTAATGCGAGGCTTCTGCAACGGTTGTTTTTTCGGCGTTGATTGAC
TTTTGTGCCTTGGCCTAGGAGGCGTTGAGGTGAGGGGGAAAGGAGAGTTG
AAATGAGTTTCACTACCTAATGTGGATGGGTAGGAAAGAGAAGAAGAGTT
GACAGAGAGAAAGTCGAATGGATGAATTTTCCTGTCTTTTCTGTGAGTCC
CGAGACGGCTAGGCAAGGAGGGGATAAGTGGAGACTGAACTAGCACCGCC
ACCACCAGAGGATCAGTGTAACGACAAACCACCCACCACTACCAGCAGAA
GAAAAAAAAAAAGGAGGAGAAGGGCAAATGCTTGGACGGGCGACTACTGG
GGCTGACCAGTAGAGGGATTGGAAGAAGGGGGTGTGGTGAGAGATAAAAT
TGATATGTGGAGAGATAGGGAATGATATGTCGTCTTCGACTTTTTGTTGG
AGAGAGAATTCGAGTGAGAGAGAAGAAGGGAGGAAAAGAATTGCCAGCGA
TCGAAACGACCAAAGAAAGAAACATTAGAATAGAGACAAG back to topCoding sequence (CDS) from alignment at scaffold_16:506135..508724- >mRNA_7190 ID=mRNA_7190|Name=jgi.p|Nanoce1779_2|672169|organism=Nannochloropsis oceanica|type=CDS|length=4734bp|location=Sequence derived from alignment at scaffold_16:506135..508724- (Nannochloropsis oceanica)
GCCGACAAAATTCAAGCTTTGAAAACTGAGCTCAACGAGCAAGAGGGGAA
ATGGCGCGTACAGTATCAACAGCTACAAAAAGAGAAGGAAGCCTTGGAAG
GAGCAGGCGCTGAAACGGCCCTAGCTGCCCAATGGAGGAAGAGGTATGAA
AGTCTCGTCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGCAGGCA
CGATGAAGGACAGGGAGGGCATCGATTAAGCTTGTCCGGCTCTGGGCCAG
TGGAAGAGAGATATAATGAATTAAAGGAGGAGTACAGATTGTACCGTAAA
AAAGCTTTGGAAGCCCTGAAAGAGAAGGACTCTCTCATCTCCATCTTGGA
CAAGGAGAGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCTAGGTGGG
ATGGAGGGAGGGGTGTTTCTGTAGGGGGAGGGCTGGAGGGAGGGATTTTG
GTGTATTTGAAAAATCTGACAGAGAAGTATTTCAGCACGGAGAGTGGGGA
GATTCGGGAGCACACAGAAAGAGCCATGTGTGCGGTGTTAGGCTTTAAGG
AAGAAGAGGTGAAGCGGATGAAGGCTTTGAGGGCGGGGGGAAAGGCGTAG
GAAATATAGGGTGCGGTCAGAGCTGGCCATCCGCCAAAAAGACGCCGAGA
TCAAACACCTCTCTGCGGCGGCTCTCGCAGCCCAACAACACAAGATCGAC
AATGAGGCCCCCGACGAGGAAGAGCTGAAAAGAACTGTCAAACAACAGAT
GGCCGACGACCCTGCCCCTTCCTCCCTCCCTGTACCATTACTCCCCCCGT
CAAACCAGGGGTCTACACCCCGGCCTGCCCTCCAGTCCCCTCCCCCGGCC
ACTGAGCCAACAACACCAGAGCAGCAACAGCCCCCTCCTCCGTCTCCTGT
ACCTATTAGCCCTTCTCCTCCCCTTCAACAACAAGTCCACGCCATGGAGG
CCCAGCTTCTAAAATTTAAGCGCCTCCTGACAATGTCCCGCGAACGCCTC
GAGGAAAACCAGCGCCAATTAAGCGACAAAAATCAGACCATCGACCGCCT
CACCCGCGAAGTCGATACTATAAAAAGCAAGCTCTCACGGTCCCAAACCC
AGACAACCGAACAAACCCAAGCTGCCGCTGCCGCCATTGCAGCGCTCAAG
CAATTGCAACAGCAGCAGCAACAGCAGCAGCACCAGAAGAATCAGCAGCA
GAAGCATCAACAACAGCGACAGCAGCGAGAGAGGGGGGAAGAGAAGATGG
GTGACCCCCCAGTGGCGGTCGAAGTACCACCACGACGGGCATTGCTGCGC
GTGCAGCAGGACAATTTGATTTGGGTGTTGTTCGAAAAAGATGAACCGCC
TAAAGGCAGCAGCAGTAGCAGCAGCAACAGCAGCAACGGTGACAAGCACC
ACTCTTTGGGTCTAGCTTGGAAATCGTTTGCGTGCGAGGAGGATCTTGCG
GGCCACATAGCCCGGGGGCCCGGGCAGGAGCCTCTCCTTCTCCCTTCTCC
TTGCTTGTCGCCTCAACAGTCTACTCGTCTGTCGCTGGAGGCACAAGGAC
GGGTGGACCAGCTACAGGAGGAGCTACGGCCGACAAAATTCAAGCTTTGA
AAACTGAGCTCAACGAGCAAGAGGGGAAATGGCGCGTACAGTATCAACAG
CTACAAAAAGAGAAGGAAGCCTTGGAAGGAGCAGGCGCTGAAACGGCCCT
AGCTGCCCAATGGAGGAAGAGGTATGAAAGTCTCGTCAAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAAGGCAGGCACGATGAAGGACAGGGAGGGCAT
CGATTAAGCTTGTCCGGCTCTGGGCCAGTGGAAGAGAGATATAATGAATT
AAAGGAGGAGTACAGATTGTACCGTAAAAAAGCTTTGGAAGCCCTGAAAG
AGAAGGACTCTCTCATCTCCATCTTGGACAAGGAGAGCGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGGGCTAGGTGGGATGGAGGGAGGGGTGTTTCTGT
AGGGGGAGGGCTGGAGGGAGGGATTTTGGTGTATTTGAAAAATCTGACAG
AGAAGTATTTCAGCACGGAGAGTGGGGAGATTCGGGAGCACACAGAAAGA
GCCATGTGTGCGGTGTTAGGCTTTAAGGAAGAAGAGGTGAAGCGGATGAA
GGCTTTGAGGGCGGGGGGAAAGGCGTAGGAAATATAGGGTGCGGTCAGAG
CTGGCCATCCGCCAAAAAGACGCCGAGATCAAACACCTCTCTGCGGCGGC
TCTCGCAGCCCAACAACACAAGATCGACAATGAGGCCCCCGACGAGGAAG
AGCTGAAAAGAACTGTCAAACAACAGATGGCCGACGACCCTGCCCCTTCC
TCCCTCCCTGTACCATTACTCCCCCCGTCAAACCAGGGGTCTACACCCCG
GCCTGCCCTCCAGTCCCCTCCCCCGGCCACTGAGCCAACAACACCAGAGC
AGCAACAGCCCCCTCCTCCGTCTCCTGTACCTATTAGCCCTTCTCCTCCC
CTTCAACAACAAGTCCACGCCATGGAGGCCCAGCTTCTAAAATTTAAGCG
CCTCCTGACAATGTCCCGCGAACGCCTCGAGGAAAACCAGCGCCAATTAA
GCGACAAAAATCAGACCATCGACCGCCTCACCCGCGAAGTCGATACTATA
AAAAGCAAGCTCTCACGGTCCCAAACCCAGACAACCGAACAAACCCAAGC
TGCCGCTGCCGCCATTGCAGCGCTCAAGCAATTGCAACAGCAGCAGCAAC
AGCAGCAGCACCAGAAGAATCAGCAGCAGAAGCATCAACAACAGCGACAG
CAGCGAGAGAGGGGGGAAGAGAAGATGGGTGACCCCCCAGTGGCGGTCGA
AGTACCACCACGACGGGCATTGCTGCGCGTGCAGCAGGACAATTTGATTT
GGGTGTTGTTCGAAAAAGATGAACCGCCTAAAGGCAGCAGCAGTAGCAGC
AGCAACAGCAGCAACGGTGACAAGCACCACTCTTTGGGTCTAGCTTGGAA
ATCGTTTGCGTGCGAGGAGGATCTTGCGGGCCACATAGCCCGGGGGCCCG
GGCAGGAGCCTCTCCTTCTCCCTTCTCCTTGCTTGTCGCCTCAACAGTCT
ACTCGTCTGTCGCTGGAGGCACAAGGACGGGTGGACCAGCTACAGGAGGA
GCTACGGCCGACAAAATTCAAGCTTTGAAAACTGAGCTCAACGAGCAAGA
GGGGAAATGGCGCGTACAGTATCAACAGCTACAAAAAGAGAAGGAAGCCT
TGGAAGGAGCAGGCGCTGAAACGGCCCTAGCTGCCCAATGGAGGAAGAGG
TATGAAAGTCTCGTCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGG
CAGGCACGATGAAGGACAGGGAGGGCATCGATTAAGCTTGTCCGGCTCTG
GGCCAGTGGAAGAGAGATATAATGAATTAAAGGAGGAGTACAGATTGTAC
CGTAAAAAAGCTTTGGAAGCCCTGAAAGAGAAGGACTCTCTCATCTCCAT
CTTGGACAAGGAGAGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCTA
GGTGGGATGGAGGGAGGGGTGTTTCTGTAGGGGGAGGGCTGGAGGGAGGG
ATTTTGGTGTATTTGAAAAATCTGACAGAGAAGTATTTCAGCACGGAGAG
TGGGGAGATTCGGGAGCACACAGAAAGAGCCATGTGTGCGGTGTTAGGCT
TTAAGGAAGAAGAGGTGAAGCGGATGAAGGCTTTGAGGGCGGGGGGAAAG
GCGTAGGAAATATAGGGTGCGGTCAGAGCTGGCCATCCGCCAAAAAGACG
CCGAGATCAAACACCTCTCTGCGGCGGCTCTCGCAGCCCAACAACACAAG
ATCGACAATGAGGCCCCCGACGAGGAAGAGCTGAAAAGAACTGTCAAACA
ACAGATGGCCGACGACCCTGCCCCTTCCTCCCTCCCTGTACCATTACTCC
CCCCGTCAAACCAGGGGTCTACACCCCGGCCTGCCCTCCAGTCCCCTCCC
CCGGCCACTGAGCCAACAACACCAGAGCAGCAACAGCCCCCTCCTCCGTC
TCCTGTACCTATTAGCCCTTCTCCTCCCCTTCAACAACAAGTCCACGCCA
TGGAGGCCCAGCTTCTAAAATTTAAGCGCCTCCTGACAATGTCCCGCGAA
CGCCTCGAGGAAAACCAGCGCCAATTAAGCGACAAAAATCAGACCATCGA
CCGCCTCACCCGCGAAGTCGATACTATAAAAAGCAAGCTCTCACGGTCCC
AAACCCAGACAACCGAACAAACCCAAGCTGCCGCTGCCGCCATTGCAGCG
CTCAAGCAATTGCAACAGCAGCAGCAACAGCAGCAGCACCAGAAGAATCA
GCAGCAGAAGCATCAACAACAGCGACAGCAGCGAGAGAGGGGGGAAGAGA
AGATGGGTGACCCCCCAGTGGCGGTCGAAGTACCACCACGACGGGCATTG
CTGCGCGTGCAGCAGGACAATTTGATTTGGGTGTTGTTCGAAAAAGATGA
ACCGCCTAAAGGCAGCAGCAGTAGCAGCAGCAACAGCAGCAACGGTGACA
AGCACCACTCTTTGGGTCTAGCTTGGAAATCGTTTGCGTGCGAGGAGGAT
CTTGCGGGCCACATAGCCCGGGGGCCCGGGCAGGAGCCTCTCCTTCTCCC
TTCTCCTTGCTTGTCGCCTCAACAGTCTACTCGTCTGTCGCTGGAGGCAC
AAGGACGGGTGGACCAGCTACAGGAGGAGCTACG back to top
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