jgi.p|Nanoce1779_2|106065, mRNA_7188 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|106065
Unique NamemRNA_7188
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1170
Alignment locationscaffold_16:499456..500625 -

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Properties
Property NameValue
TranscriptId106151
TrackFilteredModels2
ProteinId106065
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:499456..500625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|106065gene_7188Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|106065mRNA_7188-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7188CDS_7188Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7188 ID=mRNA_7188|Name=jgi.p|Nanoce1779_2|106065|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
TGTATGCTTTAATCACATTTTTGGTGTAAAATGTCATTCATGTATGACGT
GTACACATCGTGTGGTCCAAGCCCGCTCGAAAAAAATATGGGCCACGGAT
GGCCTGGCGCCTAGATCATGCTCATTCACAATCAAAAGTATTGGGATTGA
AACTAACATCACTTTCAGTGTACCCTGGCATTGTTAAGCCCTTCTTGTTC
CGCGGTACTGCTGTCCTGTCGCGTCATTCATTGCTTCTGATCAAAATCGG
GGGCTCTGGGGTAGGGAGAACAATTGCTTGGAACCGCCATTTCACGCAGA
CACGTGATCAAGAAGACAATGAAAGGTAGTCGAGCAGTGTATCTCTCGAG
TACCCAATTCTCGTTCTTCCTTGTTCCGCTTTTTCCATAAATGTCGTATG
ATTCCCCACACGCGTCATGGCTCTTTTTTGCCAACCCTCCTACTACTCTT
CCTTCCCATCCTCTACCTTCCTTAAGGAGTGTAAATTGCCTTCATCGAGA
ACAAATGTAAACGTATATCAGGAGAAGAATGTAAAGGGGACAAGCAGAAT
CTATCCTTCGGCGCTCCTCTGCTTCGAGATACAAGGAATAAGTTACTACT
TTGTCTATCTGCCCCTCCCCGAACAATCCCGCCCACACTCCCTACTCGAC
CTTTCTTTCCTGCTCCTCCTTTCACTTCGACTTGACAGTCTTTCCCTCAC
TCAACTTACACGGGAAAATCTCACAAATCACTGTAATACAAGCATGTATT
CCCCCGATGCTGCCTCTACTCTGAAGACCCGAGTCGTATATCAACGCAAT
CACCACACAATTCATCAACGGGTCACTCGTAAACAATTCATTGTCATTTC
AGATGCCCCCAACAGCGGATGCTCCAAACGACGTGGCCAAGTACACCGAA
AAATTATCAATGCTAATTGTTCCAAAATGCATCAAAGTCACCGACAACTC
AACGGCCGACAGTGCATTACGTGGGTGTGTGAAATACATCATTCCCCCTA
TTCATGTCAATCAAGCAAACCACTCAAAGTCAACATGAAAGTCTCTATGA
ATTGAGCCATGGAAGTCCCTCCCAATGTCACGTCCAGGACAACAAAGTTG
ACCCTACAATTATACCTATCAAAAATGTGAGGACTCATGCCCATAGATGC
AGGACAGGGTGGAGGCTAAG
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protein sequence of jgi.p|Nanoce1779_2|106065

>mRNA_7188-protein ID=mRNA_7188-protein|Name=jgi.p|Nanoce1779_2|106065|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MALFCQPSYYSSFPSSTFLKECKLPSSRTNVNVYQEKNVKGTSRIYPSAL
LCFEIQGISYYFVYLPLPEQSRPHSLLDLSFLLLLSLRLDSLSLTQLTRE
NLTNHCNTSMYSPDAASTLKTRVVYQRNHHTIHQRVTRKQFIVISDAPNS
GCSKRRGQVHRKIINANCSKMHQSHRQLNGRQCITWVCEIHHSPYSCQSS
KPLKVNMKVSMN*
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mRNA from alignment at scaffold_16:499456..500625-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7188 ID=mRNA_7188|Name=jgi.p|Nanoce1779_2|106065|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp|location=Sequence derived from alignment at scaffold_16:499456..500625- (Nannochloropsis oceanica)
TGTATGCTTTAATCACATTTTTGGTGTAAAATGTCATTCATGTATGACGT
GTACACATCGTGTGGTCCAAGCCCGCTCGAAAAAAATATGGGCCACGGAT
GGCCTGGCGCCTAGATCATGCTCATTCACAATCAAAAGTATTGGGATTGA
AACTAACATCACTTTCAGTGTACCCTGGCATTGTTAAGCCCTTCTTGTTC
CGCGGTACTGCTGTCCTGTCGCGTCATTCATTGCTTCTGATCAAAATCGG
GGGCTCTGGGGTAGGGAGAACAATTGCTTGGAACCGCCATTTCACGCAGA
CACGTGATCAAGAAGACAATGAAAGGTAGTCGAGCAGTGTATCTCTCGAG
TACCCAATTCTCGTTCTTCCTTGTTCCGCTTTTTCCATAAATGTCGTATG
ATTCCCCACACGCGTCATGGCTCTTTTTTGCCAACCCTCCTACTACTCTT
CCTTCCCATCCTCTACCTTCCTTAAGGAGTGTAAATTGCCTTCATCGAGA
ACAAATGTAAACGTATATCAGGAGAAGAATGTAAAGGGGACAAGCAGAAT
CTATCCTTCGGCGCTCCTCTGCTTCGAGATACAAGGAATAAGTTACTACT
TTGTCTATCTGCCCCTCCCCGAACAATCCCGCCCACACTCCCTACTCGAC
CTTTCTTTCCTGCTCCTCCTTTCACTTCGACTTGACAGTCTTTCCCTCAC
TCAACTTACACGGGAAAATCTCACAAATCACTGTAATACAAGCATGTATT
CCCCCGATGCTGCCTCTACTCTGAAGACCCGAGTCGTATATCAACGCAAT
CACCACACAATTCATCAACGGGTCACTCGTAAACAATTCATTGTCATTTC
AGATGCCCCCAACAGCGGATGCTCCAAACGACGTGGCCAAGTACACCGAA
AAATTATCAATGCTAATTGTTCCAAAATGCATCAAAGTCACCGACAACTC
AACGGCCGACAGTGCATTACGTGGGTGTGTGAAATACATCATTCCCCCTA
TTCATGTCAATCAAGCAAACCACTCAAAGTCAACATGAAAGTCTCTATGA
ATTGAGCCATGGAAGTCCCTCCCAATGTCACGTCCAGGACAACAAAGTTG
ACCCTACAATTATACCTATCAAAAATGTGAGGACTCATGCCCATAGATGC
AGGACAGGGTGGAGGCTAAG
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Coding sequence (CDS) from alignment at scaffold_16:499456..500625-

>mRNA_7188 ID=mRNA_7188|Name=jgi.p|Nanoce1779_2|106065|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_16:499456..500625- (Nannochloropsis oceanica)
ATGGCTCTTTTTTGCCAACCCTCCTACTACTCTTCCTTCCCATCCTCTAC
CTTCCTTAAGGAGTGTAAATTGCCTTCATCGAGAACAAATGTAAACGTAT
ATCAGGAGAAGAATGTAAAGGGGACAAGCAGAATCTATCCTTCGGCGCTC
CTCTGCTTCGAGATACAAGGAATAAGTTACTACTTTGTCTATCTGCCCCT
CCCCGAACAATCCCGCCCACACTCCCTACTCGACCTTTCTTTCCTGCTCC
TCCTTTCACTTCGACTTGACAGTCTTTCCCTCACTCAACTTACACGGGAA
AATCTCACAAATCACTGTAATACAAGCATGTATTCCCCCGATGCTGCCTC
TACTCTGAAGACCCGAGTCGTATATCAACGCAATCACCACACAATTCATC
AACGGGTCACTCGTAAACAATTCATTGTCATTTCAGATGCCCCCAACAGC
GGATGCTCCAAACGACGTGGCCAAGTACACCGAAAAATTATCAATGCTAA
TTGTTCCAAAATGCATCAAAGTCACCGACAACTCAACGGCCGACAGTGCA
TTACGTGGGTGTGTGAAATACATCATTCCCCCTATTCATGTCAATCAAGC
AAACCACTCAAAGTCAACATGAAAGTCTCTATGAATTGA
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Synonyms
Publications