jgi.p|Nanoce1779_2|595924, mRNA_7183 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595924
Unique Name	mRNA_7183
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1141
Alignment location	scaffold_16:480111..481843 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596010
Track	FilteredModels2
ProteinId	595924

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:480111..481843 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595924	gene_7183	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595924	mRNA_7183-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7183	CDS_7183	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:480111..481843+
coding sequence from alignment at scaffold_16:480111..481843+

mRNA sequence

>mRNA_7183 ID=mRNA_7183|Name=jgi.p|Nanoce1779_2|595924|organism=Nannochloropsis oceanica|type=mRNA|length=1141bp
ACAGGAGCGTACCAAGCCAGCCAGCCAGCAACTATCTACCCAAGTATTGC
GTGCAACAACCGCCTGTAGGCAAGCTCTCACAATCACCATGATCACCACT
AACCTCGTTCTTCTGTTGATTCTTGGCTTGCTGTCTGTCAGCATTCATGC
CTTTGTGCCGGCGGCTCCCTTGACCAGTCGCCAAGCATCCTCCCTCCTCG
TCCGCAACGCCGAGCAGGAAGCCTCCACCTCCTCTGTCTCACGAAGCGAC
ATCCTGCGACAAGGCGGCCTGGCGTCGATCGCGGGTGTGCTCGCCCTCAC
TGGCAGTGGCAACATACTCTCTTCCTACTTCACCCCTCTTTCTGCTTCTG
CTGCTGATGCTGCTACAGTAGAAGAGCAATCTTACTTTGACGAGAAGTAC
AAGGTGGCATTTGAGCATGTTCCCAAGGCATGGGAGCGAACGGACACGAC
CATCGGCACGAATAATTTGGACCCGAGGAGGATTGTGGTATTCAAGGACC
CCAACAGCCAGGCGAATGTCTTCATTGCCTACACACCCGTCCAACCCGAC
TTCACAACTCTGGGTGCTTTTGGCAGTATCCTCGATGTTGCCAAGACAAT
CGTCCCCAAAGGCCGCGGCGTGGAAAGCAAGCTCCTGAAGTACGAAGGCC
GAAAGGGCGCCTATTATTATGACTATGTCATTCAACCTGATGGCCAGCCT
AAGCGGCATTTGACCACTCTGTTTGCTCTCATTACCATCAGTGGAACGGG
GGAGTGCTTGGCCACATACACCACGTCTTGTTTGGAGGACCAATGGGCAG
CCCTCGAGCCCGTATATGAGAAGATTACCAACTCATTTAGTGTGGGCCAA
AAAGAAGTGGCATAACTCAAGGAGGAAGTTATCAGAAGGGAGGGAATGAG
GAAGGGGAGGGAGGATTAGTCAACTTCTCAGCGCGGTTGCGACGCGCACG
CAAGCAACCAGTAATAAAAGCATCAACTAGAATGTTTTGAGTTTCACAAC
GCAGAAAGCAAGAAATGAAGGACAATTCCTTTATAGTAATAAAGCGAATT
CCTTGCCTTGTATTGTCTCCACTCGTAGCTGTTCCGTGGGAGGTTTTTCA
AATGCAGTCAAACTCGTCAAACGGCTGCGGCGGCGGCCGTT

protein sequence of jgi.p|Nanoce1779_2|595924

>mRNA_7183-protein ID=mRNA_7183-protein|Name=jgi.p|Nanoce1779_2|595924|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MITTNLVLLLILGLLSVSIHAFVPAAPLTSRQASSLLVRNAEQEASTSSV
SRSDILRQGGLASIAGVLALTGSGNILSSYFTPLSASAADAATVEEQSYF
DEKYKVAFEHVPKAWERTDTTIGTNNLDPRRIVVFKDPNSQANVFIAYTP
VQPDFTTLGAFGSILDVAKTIVPKGRGVESKLLKYEGRKGAYYYDYVIQP
DGQPKRHLTTLFALITISGTGECLATYTTSCLEDQWAALEPVYEKITNSF
SVGQKEVA*

mRNA from alignment at scaffold_16:480111..481843+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7183 ID=mRNA_7183|Name=jgi.p|Nanoce1779_2|595924|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp|location=Sequence derived from alignment at scaffold_16:480111..481843+ (Nannochloropsis oceanica)
ACAGGAGCGTACCAAGCCAGCCAGCCAGCAACTATCTACCCAAGTATTGC
GTGCAACAACCGCCTGTAGGCAAGCTCTCACAATCACCATGATCACCACT
AACCTCGTTCTTCTGTTGATTCTTGGCTTGCTGTCTGTCAGCATTCATGC
CTTTGTGCCGGCGGCTCCCTTGACCAGGTAGGTACACGAGTGTAATCCGT
CCTACTAACCTGGTGCACTGTCTTGTCGTTTCTCATAATGTGTTAAAAAG
TTGCACACGCGTTAAGCGGGGCTGGAATTATCGAGCTGTAAGTCGTTGTA
TTCATACCGCAACCGACGCCCCTTCCTCCCATCCCTCCCCTCGCAGTCGC
CAAGCATCCTCCCTCCTCGTCCGCAACGCCGAGCAGGAAGCCTCCACCTC
CTCTGTCTCACGAAGCGACATCCTGCGACAAGGCGGCCTGGCGTCGATCG
CGGGTGTGCTCGCCCTCACTGGCAGTGGCAACATACTCTCTTCCTACTTC
ACCCCTCTTTCTGCTTCTGCTGCTGATGCTGCTACAGTAGAAGAGCAATC
TTACTTTGACGAGAAGTACAAGGTGGCATTTGAGCATGTTCCCAAGGCAT
GGGAGCGAACGGACACGACCATCGGCACGAATAATTTGGACCCGAGGAGG
ATTGTGGTATTCAAGGACCCCAACAGCCAGGCGAATGTCTTCATTGCCTA
CACAGTAAGGACAAGCCCCTCCTCACTCACTCACTCACTCCGTCTGTTTA
TTCATCGTCCGGCATTAATAGGAAAGCAAAAGATAGCTACTACCTCCCTC
CCTTCCTCCTTTCCACCCTTTCTCCCTCCCTAGCCCGTCCAACCCGACTT
CACAACTCTGGGTGCTTTTGGCAGTATCCTCGATGTTGCCAAGACAATCG
TCCCCAAAGGCCGCGGTAGGTGCCTCTCTTGCTCCCTCTATCCTTCTTCC
CTCCCTTTTTACCCTCCCTTCTTCCCTCCCTTCCTCCCATCCTTCCTCTC
TCCCTTCCTGGTACGAGGGAAGAAGGATCCCTTTGTCCTCACTGTACGCG
CTCCCCCTCCATCCTTATTTTATTTCCTCCCGTTTTTTTTCTGTCTTCCG
TCTTGTGCTTCTAAAAGCGCACTTTGGTCTGATCAAGTCAATTATATATA
CATATAATATATAGCTTATTTTCCCTCTCTCCCCTCATCTTCCATCCTCC
TACCCCCAGGCGTGGAAAGCAAGCTCCTGAAGTACGAAGGCCGAAAGGGC
GCCTATTATTATGACTATGTCATTCAACCTGATGGCCAGCCTAAGCGGCA
TTTGACCACTCTGTTTGCTCTCATTACCATCAGTGGAACGGGGGAGTGCT
TGGCCACATACACCACGTCTTGTTTGGAGGACCAATGGGCAGCCCTCGAG
CCCGTATATGAGAAGATTACCAACTCATTTAGTGTGGGCCAAAAAGAAGT
GGCATAACTCAAGGAGGAAGTTATCAGAAGGGAGGGAATGAGGAAGGGGA
GGGAGGATTAGTCAACTTCTCAGCGCGGTTGCGACGCGCACGCAAGCAAC
CAGTAATAAAAGCATCAACTAGAATGTTTTGAGTTTCACAACGCAGAAAG
CAAGAAATGAAGGACAATTCCTTTATAGTAATAAAGCGAATTCCTTGCCT
TGTATTGTCTCCACTCGTAGCTGTTCCGTGGGAGGTTTTTCAAATGCAGT
CAAACTCGTCAAACGGCTGCGGCGGCGGCCGTT

Coding sequence (CDS) from alignment at scaffold_16:480111..481843+

>mRNA_7183 ID=mRNA_7183|Name=jgi.p|Nanoce1779_2|595924|organism=Nannochloropsis oceanica|type=CDS|length=3108bp|location=Sequence derived from alignment at scaffold_16:480111..481843+ (Nannochloropsis oceanica)
ATGATCACCACTAACCTCGTTCTTCTGTTGATTCTTGGCTTGCTGTCTGT
CAGCATTCATGCCTTTGTGCCGGCGGCTCCCTTGACCAGTCGCCAAGCAT
CCTCCCTCCTCGTCCGCAACGCCGAGCAGGAAGCCTCCACCTCCTCTGTC
TCACGAAGCGACATCCTGCGACAAGGCGGCCTGGCGTCGATCGCGGGTGT
GCTCGCCCTCACTGGCAGTGGCAACATACTCTCTTCCTACTTCACCCCTC
TTTCTGCTTCTGCTGCTGATGCTGCTACAGTAGAAGAGCAATCTTACTTT
GACGAGAAGTACAAGGTGGCATTTGAGCATGTTCCCAAGGCATGGGAGCG
AACGGACACGACCATCGGCACGAATAATTTGGACCCGAGGAGGATTGTGG
TATTCAAGGACCCCAACAGCCAGGCGAATGTCTTCATTGCCTACACACCC
GTCCAACCCGACTTCACAACTCTGGGTGCTTTTGGCAGTATCCTCGATGT
TGCCAAGACAATCGTCCCCAAAGGCCGCGGCGTGGAAAGCAAGCTCCTGA
AGTACGAAGGCCGAAAGGGCGCCTATTATTATGACTATGTCATTCAACCT
GATGGCCAGCCTAAGCGGCATTTGACCACTCTGTTTGCTCTCATTACCAT
CAGTGGAACGGGGGAGTGCTTGGCCACATACACCACGTCTTGTTTGGAGG
ACCAATGGGCAGCCCTCGAGCCCGTATATGAGAAGATTACCAACTCATTT
AGTGTGGGCCAAAAAGAAGTGGCATAAATGATCACCACTAACCTCGTTCT
TCTGTTGATTCTTGGCTTGCTGTCTGTCAGCATTCATGCCTTTGTGCCGG
CGGCTCCCTTGACCAGTCGCCAAGCATCCTCCCTCCTCGTCCGCAACGCC
GAGCAGGAAGCCTCCACCTCCTCTGTCTCACGAAGCGACATCCTGCGACA
AGGCGGCCTGGCGTCGATCGCGGGTGTGCTCGCCCTCACTGGCAGTGGCA
ACATACTCTCTTCCTACTTCACCCCTCTTTCTGCTTCTGCTGCTGATGCT
GCTACAGTAGAAGAGCAATCTTACTTTGACGAGAAGTACAAGGTGGCATT
TGAGCATGTTCCCAAGGCATGGGAGCGAACGGACACGACCATCGGCACGA
ATAATTTGGACCCGAGGAGGATTGTGGTATTCAAGGACCCCAACAGCCAG
GCGAATGTCTTCATTGCCTACACACCCGTCCAACCCGACTTCACAACTCT
GGGTGCTTTTGGCAGTATCCTCGATGTTGCCAAGACAATCGTCCCCAAAG
GCCGCGGCGTGGAAAGCAAGCTCCTGAAGTACGAAGGCCGAAAGGGCGCC
TATTATTATGACTATGTCATTCAACCTGATGGCCAGCCTAAGCGGCATTT
GACCACTCTGTTTGCTCTCATTACCATCAGTGGAACGGGGGAGTGCTTGG
CCACATACACCACGTCTTGTTTGGAGGACCAATGGGCAGCCCTCGAGCCC
GTATATGAGAAGATTACCAACTCATTTAGTGTGGGCCAAAAAGAAGTGGC
ATAAATGATCACCACTAACCTCGTTCTTCTGTTGATTCTTGGCTTGCTGT
CTGTCAGCATTCATGCCTTTGTGCCGGCGGCTCCCTTGACCAGTCGCCAA
GCATCCTCCCTCCTCGTCCGCAACGCCGAGCAGGAAGCCTCCACCTCCTC
TGTCTCACGAAGCGACATCCTGCGACAAGGCGGCCTGGCGTCGATCGCGG
GTGTGCTCGCCCTCACTGGCAGTGGCAACATACTCTCTTCCTACTTCACC
CCTCTTTCTGCTTCTGCTGCTGATGCTGCTACAGTAGAAGAGCAATCTTA
CTTTGACGAGAAGTACAAGGTGGCATTTGAGCATGTTCCCAAGGCATGGG
AGCGAACGGACACGACCATCGGCACGAATAATTTGGACCCGAGGAGGATT
GTGGTATTCAAGGACCCCAACAGCCAGGCGAATGTCTTCATTGCCTACAC
ACCCGTCCAACCCGACTTCACAACTCTGGGTGCTTTTGGCAGTATCCTCG
ATGTTGCCAAGACAATCGTCCCCAAAGGCCGCGGCGTGGAAAGCAAGCTC
CTGAAGTACGAAGGCCGAAAGGGCGCCTATTATTATGACTATGTCATTCA
ACCTGATGGCCAGCCTAAGCGGCATTTGACCACTCTGTTTGCTCTCATTA
CCATCAGTGGAACGGGGGAGTGCTTGGCCACATACACCACGTCTTGTTTG
GAGGACCAATGGGCAGCCCTCGAGCCCGTATATGAGAAGATTACCAACTC
ATTTAGTGTGGGCCAAAAAGAAGTGGCATAAATGATCACCACTAACCTCG
TTCTTCTGTTGATTCTTGGCTTGCTGTCTGTCAGCATTCATGCCTTTGTG
CCGGCGGCTCCCTTGACCAGTCGCCAAGCATCCTCCCTCCTCGTCCGCAA
CGCCGAGCAGGAAGCCTCCACCTCCTCTGTCTCACGAAGCGACATCCTGC
GACAAGGCGGCCTGGCGTCGATCGCGGGTGTGCTCGCCCTCACTGGCAGT
GGCAACATACTCTCTTCCTACTTCACCCCTCTTTCTGCTTCTGCTGCTGA
TGCTGCTACAGTAGAAGAGCAATCTTACTTTGACGAGAAGTACAAGGTGG
CATTTGAGCATGTTCCCAAGGCATGGGAGCGAACGGACACGACCATCGGC
ACGAATAATTTGGACCCGAGGAGGATTGTGGTATTCAAGGACCCCAACAG
CCAGGCGAATGTCTTCATTGCCTACACACCCGTCCAACCCGACTTCACAA
CTCTGGGTGCTTTTGGCAGTATCCTCGATGTTGCCAAGACAATCGTCCCC
AAAGGCCGCGGCGTGGAAAGCAAGCTCCTGAAGTACGAAGGCCGAAAGGG
CGCCTATTATTATGACTATGTCATTCAACCTGATGGCCAGCCTAAGCGGC
ATTTGACCACTCTGTTTGCTCTCATTACCATCAGTGGAACGGGGGAGTGC
TTGGCCACATACACCACGTCTTGTTTGGAGGACCAATGGGCAGCCCTCGA
GCCCGTATATGAGAAGATTACCAACTCATTTAGTGTGGGCCAAAAAGAAG
TGGCATAA

Synonyms

Publications