jgi.p|Nanoce1779_2|567305, mRNA_7181 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|567305
Unique Name	mRNA_7181
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1182
Alignment location	scaffold_16:474863..477561 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	567391
Track	FilteredModels2
ProteinId	567305

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:474863..477561 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567305	gene_7181	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567305	mRNA_7181-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7181	CDS_7181	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:474863..477561+
coding sequence from alignment at scaffold_16:474863..477561+

mRNA sequence

>mRNA_7181 ID=mRNA_7181|Name=jgi.p|Nanoce1779_2|567305|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
ATGATTGCCTGCTGCCGCCCTGGTGAAGATGATAGCGAGGCCGACGAGGA
GACGGCGCATATCCTCCCCCCACCCCTCGTGGTCGTAGACAATCCCGCCA
CCGGCCTGGACACGTCCCACAAACACCTAAATGCTAGCAAGAAAGTCGTT
GTCAGCGTCATCGCTTGTCTCAGCTGGGTCTCCATGGGGGGACTACAAGG
TCTGCTAGGACCAGCCATCCCAGCTATTGCCAAGCATTTGGCCATGCCCA
ATACGTCCTTAGGCTGGGCGTTTACTGTCCGTGCAGGAGGATACATCACG
GGTTCTTTGTTTGTTTCTCGATTAAGGGAAGATGGGGTGCGTCCAAGCAA
GGTGATGATCATGGCGTGTTCGGGTCTAGTAGCCTCGATTATAAACGTGG
CCATGCCGCATAGCACCAGCATGCTCGGCTTACTCTTCCTCTGCTTTCTC
CAAGGGAACGGCTTATCCATCATCTCCACCCTGGGTAATATCATTTTACT
CGAAACATGGGGCTCCAAGGCTGGTCCGTGGTTGCAAGGCTTGCATTTTT
CCTTTGGGATTGGTGCTATATTGTCTTCGTTAGTTCTCGGAATCTCTGGC
ATCACAGCCTCATTCAATTTTTTTGGGTGTGTCGGAATGCTCCCTTTAGT
GGTGGTGGTGGTGGTGGAAAAGCTATCGAGGTGGAGGGAGAAGGACAAGG
AAGGGAGGAAGAATCAGACATTGCCGCTTCCTGATAGCATCAAGTGGCTG
CTAACTTTATTTTTGGGGCTCTACGTGGGGGGAGAGTGTGGCTTTGGGGG
CTGGATCTCCACTTTCGTCCTTATGGAAGCTATGTTTGGTTACGGTATGT
CGAGTGTCTATCCCCTTGCTATGTCGTGGCCTGGAGAGGCCGGTTTTGCA
TTAGATACTGCAAGCACGGCCCAATTAGTGATTGGCGGGTGCTTGGGGGA
GGCAGCTGTGCCCCTTGTGCTCGGAGGGATGATGCAGCTCGTGGGTCCTC
AGAGTCTCCCTCTGTCGATTCTGGGTGTGGTGGTGCTGTTGGCATTGGCA
CAATTGACGATAGAGATGTTGGGAAGGCGGCTCTGGCTGCTGATAATTTG
TGTGGAATGTTTGCGTAGTCGTAGTAGGAGTAAAATGGAGGGGGAAGAGG
AGGAGAAGGACCAGGAGAAGCAGCAGAAGTAG

protein sequence of jgi.p|Nanoce1779_2|567305

>mRNA_7181-protein ID=mRNA_7181-protein|Name=jgi.p|Nanoce1779_2|567305|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MIACCRPGEDDSEADEETAHILPPPLVVVDNPATGLDTSHKHLNASKKVV
VSVIACLSWVSMGGLQGLLGPAIPAIAKHLAMPNTSLGWAFTVRAGGYIT
GSLFVSRLREDGVRPSKVMIMACSGLVASIINVAMPHSTSMLGLLFLCFL
QGNGLSIISTLGNIILLETWGSKAGPWLQGLHFSFGIGAILSSLVLGISG
ITASFNFFGCVGMLPLVVVVVVEKLSRWREKDKEGRKNQTLPLPDSIKWL
LTLFLGLYVGGECGFGGWISTFVLMEAMFGYGMSSVYPLAMSWPGEAGFA
LDTASTAQLVIGGCLGEAAVPLVLGGMMQLVGPQSLPLSILGVVVLLALA
QLTIEMLGRRLWLLIICVECLRSRSRSKMEGEEEEKDQEKQQK*

mRNA from alignment at scaffold_16:474863..477561+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7181 ID=mRNA_7181|Name=jgi.p|Nanoce1779_2|567305|organism=Nannochloropsis oceanica|type=mRNA|length=2699bp|location=Sequence derived from alignment at scaffold_16:474863..477561+ (Nannochloropsis oceanica)
ATGATTGCCTGCTGCCGCCCTGGTGAAGATGATAGCGAGGCCGACGAGGA
GACGGCGCATATCCTCCCCCCACCCCTCGTGGTCGTAGACAATCCCGCCA
CCGGCCTGGACACGTCCCACAAACACCTAAATGCTAGCAAGAAAGTCGTT
GTCAGCGTCATCGCTTGTCTCAGCTGGGTCTCCATGGGGGGACTACAAGG
TCTGCTAGGACCAGCCATCCCAGCTATTGCCAAGCATTTGGCCATGCCCA
ATACGTCCTTAGGCTGGGCGTTTACTGTCCGTGCAGGAGGATACATCACG
GGTTCTTTGTTTGTTTCTCGATTAAGGGAAGATGGGGTGCGTCCAAGCAA
GGTGATGATCATGGCGTGTTCGGGTCTAGTAGCCTCGATTATAAACGTGG
CCATGCCGCATAGCACCAGCATGCTCGGCTTACTCTTCCTCTGCTTTCTC
CAAGGGAACGGCTTATCCATCATCTCCACCCTGGGTAATATCATTTTACT
CGAAACATGGGGCTCCAAGGCTGGTCCGTGGTTGCAAGGCTTGCATTTTT
CCTTTGGGATTGGTGCTATATTGTCTTCGTTAGTTCTCGGAATCTCTGGC
ATCACAGCCTCATTCAATTTTTTTGGGTGTGTCGGAATGCTCCCTTTAGT
GGTGGTGGTGGTGGTGGAAAAGCTATCGAGGTGGAGGGAGAAGGACAAGG
AAGGGAGGAAGAATCAGGTGATTGTGGTGGAGGAAGAGGAAGGGAGAGAG
GACGAGGGGGGGAAGACGAGGCAATTTCATCGAAATAGCACGAAGGATAT
GCACTTTGTATTCGAAGAGGGCCCGACGGGTGCCGGGAGGGAAGAAGAGG
CAAGGGTTGTTTATGACGAGGGCAAGAACGACAAGAAGCGTCTTACTCTT
TTTCCTCCTACTCGTCCAGTGCTGGCTAAGGGGGGCTTGAGCGCTCCTTT
CTCCCTACCGTCCTCTATTTTGCATCGACGGCAGTCGAGTTGTAGTAGTA
ATAGCAGCAGTAGTAGTAGTAGCAGCAGCAGCAGCAGCGGCGATCAATTG
CTACATGTGAAACGTCTGACGCTAACCATAATACCTCCCTATGAAACAAT
CATGGCCCTTCCCATCTACCCGCACCAACACCATTCCCACCACGAGCAAC
AGCAGAATCAGCGAGGTAACGACGACCAGCATGATGGGGAAGAGGCAATG
CTCTATAGTGACTTGGATGATGGTACTAGCCTCCTGGAAAGAATAGGGAG
GAGTGAATCAACTGCTACTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGAGCGTGTCACC
CGTGGAGAGAGCGCTTCGTGGGGTGGAGGGAAGGAGAGAGCGAAGGGAGA
AAGGGAAGATGAATGTTGGGAGAAGGAGGGACCCCTGGAAGTGACTATTG
CGACGGACTTGAATATAAGTTGGTCGAATAATGCTGTTGCTGCTGCTGCT
GCTCATCATCGTCACTACCACCAGCTGCACACGCAGTGTCAGCAGCAGTT
TGAGTCTGATGTTATGAGAAGTAGGCTAGACAGCCTCTCAAGTAGTACTT
CTTCCTCATCCTCATCCTCTTCCTTTTCCTTGCCTTCGACTAAGACATTG
CCGCTTCCTGATAGCATCAAGTGGCTGCTAACTTTATTTTTGGGGCTCTA
CGTGGGGGGAGAGTGTGGCTTTGGGGGCTGGATCTCCACTTTCGTCCTTA
TGGAAGGTGCGTTTTTCCCATTCCCTTACACTTTTTTGACTGTATTCTCT
CTTCTCTCAATATTTTCTGTAAGCATGATGGTTTATTCAAGCATTAATTT
CTATAAACGGGACGGACAGGAGCCACTAGCTCTGCCTCGCAAGCCGCTTT
TCTGGTCTCCATTTTTTGGGCCGCCGTCACGGGAGGGCGAGCAGTCGCTG
TGGGTCAAGCACTCGTCGTTGGACCCTCCTGGTCGTTGCGTTTGCAGCTG
TTCATTTCCCTATGTGGCGCCACTGCGTTCTGTGTGCTGGGAGCAGACTC
CTTCAAAGGCGCGGCAGTCGCAACAGGTAACTTTTGTTTGTCTTCTGAAG
AGAAAGGGAGGTTTGGCGGGCCTGTTTTGTCCCCACCGTCAAAGCCACTC
ATAACCTCCTTTCATCCTTCCTTCCGTCCCACATCTCTTAGCTATGTTTG
GTTACGGTATGTCGAGTGTCTATCCCCTTGCTATGTCGTGGCCTGGAGAG
GCCGGTTTTGCATTAGATACTGCAAGCACGGCCCAATTAGTGATTGGCGG
GTGCTTGGGGGAGGCAGCTGTGCCCCTTGTGCTCGGAGGGATGATGCAGC
TCGTGGGTCCTCAGAGTCTCCCTCTGTCGATTCTGGGTGTGGTGGTGCTG
TTGGCATTGGCACAATTGACGATAGAGATGTTGGGAAGGCGGGTAACGAG
AGAGGTAGAGGGAATGAGGGAGGCAGGCATGGTTGGAGGAAGTGTTTATG
GTGCTGTAGAAGTTAGTGGGTGAGTGTGTAGTATGAGGAGAAAATAATAG
CGTAGTGTATGGACCTTTTTTAAAGTGATGTTTTTGTCGTATTTCAGCTC
TGGCTGCTGATAATTTGTGTGGAATGTTTGCGTAGTCGTAGTAGGAGTAA
AATGGAGGGGGAAGAGGAGGAGAAGGACCAGGAGAAGCAGCAGAAGTAG

Coding sequence (CDS) from alignment at scaffold_16:474863..477561+

>mRNA_7181 ID=mRNA_7181|Name=jgi.p|Nanoce1779_2|567305|organism=Nannochloropsis oceanica|type=CDS|length=4728bp|location=Sequence derived from alignment at scaffold_16:474863..477561+ (Nannochloropsis oceanica)
ATGATTGCCTGCTGCCGCCCTGGTGAAGATGATAGCGAGGCCGACGAGGA
GACGGCGCATATCCTCCCCCCACCCCTCGTGGTCGTAGACAATCCCGCCA
CCGGCCTGGACACGTCCCACAAACACCTAAATGCTAGCAAGAAAGTCGTT
GTCAGCGTCATCGCTTGTCTCAGCTGGGTCTCCATGGGGGGACTACAAGG
TCTGCTAGGACCAGCCATCCCAGCTATTGCCAAGCATTTGGCCATGCCCA
ATACGTCCTTAGGCTGGGCGTTTACTGTCCGTGCAGGAGGATACATCACG
GGTTCTTTGTTTGTTTCTCGATTAAGGGAAGATGGGGTGCGTCCAAGCAA
GGTGATGATCATGGCGTGTTCGGGTCTAGTAGCCTCGATTATAAACGTGG
CCATGCCGCATAGCACCAGCATGCTCGGCTTACTCTTCCTCTGCTTTCTC
CAAGGGAACGGCTTATCCATCATCTCCACCCTGGGTAATATCATTTTACT
CGAAACATGGGGCTCCAAGGCTGGTCCGTGGTTGCAAGGCTTGCATTTTT
CCTTTGGGATTGGTGCTATATTGTCTTCGTTAGTTCTCGGAATCTCTGGC
ATCACAGCCTCATTCAATTTTTTTGGGTGTGTCGGAATGCTCCCTTTAGT
GGTGGTGGTGGTGGTGGAAAAGCTATCGAGGTGGAGGGAGAAGGACAAGG
AAGGGAGGAAGAATCAGACATTGCCGCTTCCTGATAGCATCAAGTGGCTG
CTAACTTTATTTTTGGGGCTCTACGTGGGGGGAGAGTGTGGCTTTGGGGG
CTGGATCTCCACTTTCGTCCTTATGGAAGCTATGTTTGGTTACGGTATGT
CGAGTGTCTATCCCCTTGCTATGTCGTGGCCTGGAGAGGCCGGTTTTGCA
TTAGATACTGCAAGCACGGCCCAATTAGTGATTGGCGGGTGCTTGGGGGA
GGCAGCTGTGCCCCTTGTGCTCGGAGGGATGATGCAGCTCGTGGGTCCTC
AGAGTCTCCCTCTGTCGATTCTGGGTGTGGTGGTGCTGTTGGCATTGGCA
CAATTGACGATAGAGATGTTGGGAAGGCGGCTCTGGCTGCTGATAATTTG
TGTGGAATGTTTGCGTAGTCGTAGTAGGAGTAAAATGGAGGGGGAAGAGG
AGGAGAAGGACCAGGAGAAGCAGCAGAAGTAGATGATTGCCTGCTGCCGC
CCTGGTGAAGATGATAGCGAGGCCGACGAGGAGACGGCGCATATCCTCCC
CCCACCCCTCGTGGTCGTAGACAATCCCGCCACCGGCCTGGACACGTCCC
ACAAACACCTAAATGCTAGCAAGAAAGTCGTTGTCAGCGTCATCGCTTGT
CTCAGCTGGGTCTCCATGGGGGGACTACAAGGTCTGCTAGGACCAGCCAT
CCCAGCTATTGCCAAGCATTTGGCCATGCCCAATACGTCCTTAGGCTGGG
CGTTTACTGTCCGTGCAGGAGGATACATCACGGGTTCTTTGTTTGTTTCT
CGATTAAGGGAAGATGGGGTGCGTCCAAGCAAGGTGATGATCATGGCGTG
TTCGGGTCTAGTAGCCTCGATTATAAACGTGGCCATGCCGCATAGCACCA
GCATGCTCGGCTTACTCTTCCTCTGCTTTCTCCAAGGGAACGGCTTATCC
ATCATCTCCACCCTGGGTAATATCATTTTACTCGAAACATGGGGCTCCAA
GGCTGGTCCGTGGTTGCAAGGCTTGCATTTTTCCTTTGGGATTGGTGCTA
TATTGTCTTCGTTAGTTCTCGGAATCTCTGGCATCACAGCCTCATTCAAT
TTTTTTGGGTGTGTCGGAATGCTCCCTTTAGTGGTGGTGGTGGTGGTGGA
AAAGCTATCGAGGTGGAGGGAGAAGGACAAGGAAGGGAGGAAGAATCAGA
CATTGCCGCTTCCTGATAGCATCAAGTGGCTGCTAACTTTATTTTTGGGG
CTCTACGTGGGGGGAGAGTGTGGCTTTGGGGGCTGGATCTCCACTTTCGT
CCTTATGGAAGCTATGTTTGGTTACGGTATGTCGAGTGTCTATCCCCTTG
CTATGTCGTGGCCTGGAGAGGCCGGTTTTGCATTAGATACTGCAAGCACG
GCCCAATTAGTGATTGGCGGGTGCTTGGGGGAGGCAGCTGTGCCCCTTGT
GCTCGGAGGGATGATGCAGCTCGTGGGTCCTCAGAGTCTCCCTCTGTCGA
TTCTGGGTGTGGTGGTGCTGTTGGCATTGGCACAATTGACGATAGAGATG
TTGGGAAGGCGGCTCTGGCTGCTGATAATTTGTGTGGAATGTTTGCGTAG
TCGTAGTAGGAGTAAAATGGAGGGGGAAGAGGAGGAGAAGGACCAGGAGA
AGCAGCAGAAGTAGATGATTGCCTGCTGCCGCCCTGGTGAAGATGATAGC
GAGGCCGACGAGGAGACGGCGCATATCCTCCCCCCACCCCTCGTGGTCGT
AGACAATCCCGCCACCGGCCTGGACACGTCCCACAAACACCTAAATGCTA
GCAAGAAAGTCGTTGTCAGCGTCATCGCTTGTCTCAGCTGGGTCTCCATG
GGGGGACTACAAGGTCTGCTAGGACCAGCCATCCCAGCTATTGCCAAGCA
TTTGGCCATGCCCAATACGTCCTTAGGCTGGGCGTTTACTGTCCGTGCAG
GAGGATACATCACGGGTTCTTTGTTTGTTTCTCGATTAAGGGAAGATGGG
GTGCGTCCAAGCAAGGTGATGATCATGGCGTGTTCGGGTCTAGTAGCCTC
GATTATAAACGTGGCCATGCCGCATAGCACCAGCATGCTCGGCTTACTCT
TCCTCTGCTTTCTCCAAGGGAACGGCTTATCCATCATCTCCACCCTGGGT
AATATCATTTTACTCGAAACATGGGGCTCCAAGGCTGGTCCGTGGTTGCA
AGGCTTGCATTTTTCCTTTGGGATTGGTGCTATATTGTCTTCGTTAGTTC
TCGGAATCTCTGGCATCACAGCCTCATTCAATTTTTTTGGGTGTGTCGGA
ATGCTCCCTTTAGTGGTGGTGGTGGTGGTGGAAAAGCTATCGAGGTGGAG
GGAGAAGGACAAGGAAGGGAGGAAGAATCAGACATTGCCGCTTCCTGATA
GCATCAAGTGGCTGCTAACTTTATTTTTGGGGCTCTACGTGGGGGGAGAG
TGTGGCTTTGGGGGCTGGATCTCCACTTTCGTCCTTATGGAAGCTATGTT
TGGTTACGGTATGTCGAGTGTCTATCCCCTTGCTATGTCGTGGCCTGGAG
AGGCCGGTTTTGCATTAGATACTGCAAGCACGGCCCAATTAGTGATTGGC
GGGTGCTTGGGGGAGGCAGCTGTGCCCCTTGTGCTCGGAGGGATGATGCA
GCTCGTGGGTCCTCAGAGTCTCCCTCTGTCGATTCTGGGTGTGGTGGTGC
TGTTGGCATTGGCACAATTGACGATAGAGATGTTGGGAAGGCGGCTCTGG
CTGCTGATAATTTGTGTGGAATGTTTGCGTAGTCGTAGTAGGAGTAAAAT
GGAGGGGGAAGAGGAGGAGAAGGACCAGGAGAAGCAGCAGAAGTAGATGA
TTGCCTGCTGCCGCCCTGGTGAAGATGATAGCGAGGCCGACGAGGAGACG
GCGCATATCCTCCCCCCACCCCTCGTGGTCGTAGACAATCCCGCCACCGG
CCTGGACACGTCCCACAAACACCTAAATGCTAGCAAGAAAGTCGTTGTCA
GCGTCATCGCTTGTCTCAGCTGGGTCTCCATGGGGGGACTACAAGGTCTG
CTAGGACCAGCCATCCCAGCTATTGCCAAGCATTTGGCCATGCCCAATAC
GTCCTTAGGCTGGGCGTTTACTGTCCGTGCAGGAGGATACATCACGGGTT
CTTTGTTTGTTTCTCGATTAAGGGAAGATGGGGTGCGTCCAAGCAAGGTG
ATGATCATGGCGTGTTCGGGTCTAGTAGCCTCGATTATAAACGTGGCCAT
GCCGCATAGCACCAGCATGCTCGGCTTACTCTTCCTCTGCTTTCTCCAAG
GGAACGGCTTATCCATCATCTCCACCCTGGGTAATATCATTTTACTCGAA
ACATGGGGCTCCAAGGCTGGTCCGTGGTTGCAAGGCTTGCATTTTTCCTT
TGGGATTGGTGCTATATTGTCTTCGTTAGTTCTCGGAATCTCTGGCATCA
CAGCCTCATTCAATTTTTTTGGGTGTGTCGGAATGCTCCCTTTAGTGGTG
GTGGTGGTGGTGGAAAAGCTATCGAGGTGGAGGGAGAAGGACAAGGAAGG
GAGGAAGAATCAGACATTGCCGCTTCCTGATAGCATCAAGTGGCTGCTAA
CTTTATTTTTGGGGCTCTACGTGGGGGGAGAGTGTGGCTTTGGGGGCTGG
ATCTCCACTTTCGTCCTTATGGAAGCTATGTTTGGTTACGGTATGTCGAG
TGTCTATCCCCTTGCTATGTCGTGGCCTGGAGAGGCCGGTTTTGCATTAG
ATACTGCAAGCACGGCCCAATTAGTGATTGGCGGGTGCTTGGGGGAGGCA
GCTGTGCCCCTTGTGCTCGGAGGGATGATGCAGCTCGTGGGTCCTCAGAG
TCTCCCTCTGTCGATTCTGGGTGTGGTGGTGCTGTTGGCATTGGCACAAT
TGACGATAGAGATGTTGGGAAGGCGGCTCTGGCTGCTGATAATTTGTGTG
GAATGTTTGCGTAGTCGTAGTAGGAGTAAAATGGAGGGGGAAGAGGAGGA
GAAGGACCAGGAGAAGCAGCAGAAGTAG

Synonyms

Publications