jgi.p|Nanoce1779_2|105888, mRNA_7180 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|105888
Unique NamemRNA_7180
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1733
Alignment locationscaffold_16:472362..474094 -

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Properties
Property NameValue
TranscriptId105974
TrackFilteredModels2
ProteinId105888
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:472362..474094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105888gene_7180Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105888mRNA_7180-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7180CDS_7180Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7180 ID=mRNA_7180|Name=jgi.p|Nanoce1779_2|105888|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp
CCACCCACCCACCAGACAAGTTCTTCCTCTATCAAAATGAATAAGCAAGC
CACGCGCCGGGGCCTGGCCCTTCTAGTCCCTGTCACCATGGCGGGCCAAG
CAGGCCGGCAACCGCAGCCCGCACAGTCCCGCGCCGACCCCCAGCAACAC
AGCGCGGGCAACAGCACTGTCGTCTTGAACGGCAGCAGCGGCAGCAGCAG
CAACGACCGCAACAGCAACAACAATGCCACGGTCCTTACTGCCACGACGA
AAAGTAGTACTATTCAGGCATGCGTGGATTCGCCGTCGTCGCTGGTCCCG
CGGGAGATGCCCGATGCTGTGACCCGGGTCGTCTGCGCCTCTTTCCGATA
CCAACAGCAGCCAAACCAACGGCAACAACAAAGCAGCCACCACATCGACG
AAAATAATGCATTCCAATCTTCGGCCACTTCCACCCATAATAACAACAAC
AACGTACGCCAGCATGAAGGCATGATTAGCAACGCGGCCTCGCAGCCCGA
GGTCCAAACAAATGTGAATCATCGCCTTGCGCAAGACCCCGACTACCACA
GATTCTTTTCCTCTGCCAGCGGAGATAATACTGGTCGCGGGAGAGGACCG
TCTATTTCTTGTCCTCTTTCTCATCCTCCTTACGCTCATGGTGGTGGTAC
ACCTTCTCCACAGTCCCCTTTGCGTTTACTTCCTCCGTCCGCTGTAGCTT
TCCTCCATCAGGAGCACCAGCAGCATCACCATCATTATTCTGCATTCTCC
TCTCCAAATGTTTCCCCTCTCTCCCACCGAGCCAAATGCTACCTCCCCCC
TTCCTCTTCCTCCCCTCCCCCACTCCCATCCACCCTGTTCCACGCCATTC
CGCACAACGCGGACCGGTGCCGGAAAAATTTCGCCGCGGCAGTCAACTGT
TCTGTGTGTTTATTGCCTCTGACCGATGCGCATGTCGTGGACTGCGGAGA
GGGACACGTGTTCTGCCGGGCGTGTGTTTGGAAAGTTCAGGGGAGGGAGG
GAGGGAGGGAGGGAGGGGGAGAGGGCTGGAGCCTTGCGTCGTGGTTATCG
GCGTTTTTCTTGGGCTCAGTCAGGGTGGTTGGGGGAAGGGGGAGAACGAG
GACGAGGAGAAGGAGTGGGAGTCTATGTCCTGAGTGTAGATGTCCATTTT
CAACGTCCATTCCTGTGAGGAGGATAAATGATATAGGTGCGTTTGTGTGT
GTGTGCATTGCCTCCCTCTCTCCCTCTCTCCTCCTTTCCGTCCTTCCCTT
CGTTCCTTTCTACCCTTTTATTTTTCCCTTTCTTCCTCTCTCCATCTCTC
TACCCATCCGCTCCCACCCTGTGCAATTAGCATTTGAGCACATCCGGATG
TCGCTCTCGAACACTCACACCCCTTCCTTCCCCCTTCCTTCTCTCCCTCC
TTCCCTCCCTCCTTCCTTCCCTTACAGTCGAAAGTGTCCGGCGGCTACTC
CCGTCTCAATTCGAGGACGAAGATTTTCAAGAGCAAGAGGAGAGGAACAG
ACACGCGGAGAGGGAGGGAGGGGCGGAAGGCGCGGAGGATGCATTGCCGC
CAGGAGGGAGGGAGGAGTCGATACCGGCCTGGTTCTTCACATTTGTGTGT
TTTGTGGTGGTGGTGGCGTTTGCCATTAAAAAATAGCAAAGGAGATAGGA
ATGGAGTGAAGGAAATGCCTCTGGACAGAATCAAAAGCATGTTTTAGCCA
GAAAGAGGAAACGGAAGTATACTCATAAAGTCA
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protein sequence of jgi.p|Nanoce1779_2|105888

>mRNA_7180-protein ID=mRNA_7180-protein|Name=jgi.p|Nanoce1779_2|105888|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MNKQATRRGLALLVPVTMAGQAGRQPQPAQSRADPQQHSAGNSTVVLNGS
SGSSSNDRNSNNNATVLTATTKSSTIQACVDSPSSLVPREMPDAVTRVVC
ASFRYQQQPNQRQQQSSHHIDENNAFQSSATSTHNNNNNVRQHEGMISNA
ASQPEVQTNVNHRLAQDPDYHRFFSSASGDNTGRGRGPSISCPLSHPPYA
HGGGTPSPQSPLRLLPPSAVAFLHQEHQQHHHHYSAFSSPNVSPLSHRAK
CYLPPSSSSPPPLPSTLFHAIPHNADRCRKNFAAAVNCSVCLLPLTDAHV
VDCGEGHVFCRACVWKVQGREGGREGGGEGWSLASWLSAFFLGSVRVVGG
RGRTRTRRRSGSLCPECRCPFSTSIPVRRINDIGAFVCVCIASLSPSLLL
SVLPFVPFYPFIFPFLPLSISLPIRSHPVQLAFEHIRMSLSNTHTPSFPL
PSLPPSLPPSFPYSRKCPAATPVSIRGRRFSRARGEEQTRGEGGRGGRRG
GCIAARREGGVDTGLVLHICVFCGGGGVCH*
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mRNA from alignment at scaffold_16:472362..474094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7180 ID=mRNA_7180|Name=jgi.p|Nanoce1779_2|105888|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp|location=Sequence derived from alignment at scaffold_16:472362..474094- (Nannochloropsis oceanica)
CCACCCACCCACCAGACAAGTTCTTCCTCTATCAAAATGAATAAGCAAGC
CACGCGCCGGGGCCTGGCCCTTCTAGTCCCTGTCACCATGGCGGGCCAAG
CAGGCCGGCAACCGCAGCCCGCACAGTCCCGCGCCGACCCCCAGCAACAC
AGCGCGGGCAACAGCACTGTCGTCTTGAACGGCAGCAGCGGCAGCAGCAG
CAACGACCGCAACAGCAACAACAATGCCACGGTCCTTACTGCCACGACGA
AAAGTAGTACTATTCAGGCATGCGTGGATTCGCCGTCGTCGCTGGTCCCG
CGGGAGATGCCCGATGCTGTGACCCGGGTCGTCTGCGCCTCTTTCCGATA
CCAACAGCAGCCAAACCAACGGCAACAACAAAGCAGCCACCACATCGACG
AAAATAATGCATTCCAATCTTCGGCCACTTCCACCCATAATAACAACAAC
AACGTACGCCAGCATGAAGGCATGATTAGCAACGCGGCCTCGCAGCCCGA
GGTCCAAACAAATGTGAATCATCGCCTTGCGCAAGACCCCGACTACCACA
GATTCTTTTCCTCTGCCAGCGGAGATAATACTGGTCGCGGGAGAGGACCG
TCTATTTCTTGTCCTCTTTCTCATCCTCCTTACGCTCATGGTGGTGGTAC
ACCTTCTCCACAGTCCCCTTTGCGTTTACTTCCTCCGTCCGCTGTAGCTT
TCCTCCATCAGGAGCACCAGCAGCATCACCATCATTATTCTGCATTCTCC
TCTCCAAATGTTTCCCCTCTCTCCCACCGAGCCAAATGCTACCTCCCCCC
TTCCTCTTCCTCCCCTCCCCCACTCCCATCCACCCTGTTCCACGCCATTC
CGCACAACGCGGACCGGTGCCGGAAAAATTTCGCCGCGGCAGTCAACTGT
TCTGTGTGTTTATTGCCTCTGACCGATGCGCATGTCGTGGACTGCGGAGA
GGGACACGTGTTCTGCCGGGCGTGTGTTTGGAAAGTTCAGGGGAGGGAGG
GAGGGAGGGAGGGAGGGGGAGAGGGCTGGAGCCTTGCGTCGTGGTTATCG
GCGTTTTTCTTGGGCTCAGTCAGGGTGGTTGGGGGAAGGGGGAGAACGAG
GACGAGGAGAAGGAGTGGGAGTCTATGTCCTGAGTGTAGATGTCCATTTT
CAACGTCCATTCCTGTGAGGAGGATAAATGATATAGGTGCGTTTGTGTGT
GTGTGCATTGCCTCCCTCTCTCCCTCTCTCCTCCTTTCCGTCCTTCCCTT
CGTTCCTTTCTACCCTTTTATTTTTCCCTTTCTTCCTCTCTCCATCTCTC
TACCCATCCGCTCCCACCCTGTGCAATTAGCATTTGAGCACATCCGGATG
TCGCTCTCGAACACTCACACCCCTTCCTTCCCCCTTCCTTCTCTCCCTCC
TTCCCTCCCTCCTTCCTTCCCTTACAGTCGAAAGTGTCCGGCGGCTACTC
CCGTCTCAATTCGAGGACGAAGATTTTCAAGAGCAAGAGGAGAGGAACAG
ACACGCGGAGAGGGAGGGAGGGGCGGAAGGCGCGGAGGATGCATTGCCGC
CAGGAGGGAGGGAGGAGTCGATACCGGCCTGGTTCTTCACATTTGTGTGT
TTTGTGGTGGTGGTGGCGTTTGCCATTAAAAAATAGCAAAGGAGATAGGA
ATGGAGTGAAGGAAATGCCTCTGGACAGAATCAAAAGCATGTTTTAGCCA
GAAAGAGGAAACGGAAGTATACTCATAAAGTCA
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Coding sequence (CDS) from alignment at scaffold_16:472362..474094-

>mRNA_7180 ID=mRNA_7180|Name=jgi.p|Nanoce1779_2|105888|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_16:472362..474094- (Nannochloropsis oceanica)
ATGAATAAGCAAGCCACGCGCCGGGGCCTGGCCCTTCTAGTCCCTGTCAC
CATGGCGGGCCAAGCAGGCCGGCAACCGCAGCCCGCACAGTCCCGCGCCG
ACCCCCAGCAACACAGCGCGGGCAACAGCACTGTCGTCTTGAACGGCAGC
AGCGGCAGCAGCAGCAACGACCGCAACAGCAACAACAATGCCACGGTCCT
TACTGCCACGACGAAAAGTAGTACTATTCAGGCATGCGTGGATTCGCCGT
CGTCGCTGGTCCCGCGGGAGATGCCCGATGCTGTGACCCGGGTCGTCTGC
GCCTCTTTCCGATACCAACAGCAGCCAAACCAACGGCAACAACAAAGCAG
CCACCACATCGACGAAAATAATGCATTCCAATCTTCGGCCACTTCCACCC
ATAATAACAACAACAACGTACGCCAGCATGAAGGCATGATTAGCAACGCG
GCCTCGCAGCCCGAGGTCCAAACAAATGTGAATCATCGCCTTGCGCAAGA
CCCCGACTACCACAGATTCTTTTCCTCTGCCAGCGGAGATAATACTGGTC
GCGGGAGAGGACCGTCTATTTCTTGTCCTCTTTCTCATCCTCCTTACGCT
CATGGTGGTGGTACACCTTCTCCACAGTCCCCTTTGCGTTTACTTCCTCC
GTCCGCTGTAGCTTTCCTCCATCAGGAGCACCAGCAGCATCACCATCATT
ATTCTGCATTCTCCTCTCCAAATGTTTCCCCTCTCTCCCACCGAGCCAAA
TGCTACCTCCCCCCTTCCTCTTCCTCCCCTCCCCCACTCCCATCCACCCT
GTTCCACGCCATTCCGCACAACGCGGACCGGTGCCGGAAAAATTTCGCCG
CGGCAGTCAACTGTTCTGTGTGTTTATTGCCTCTGACCGATGCGCATGTC
GTGGACTGCGGAGAGGGACACGTGTTCTGCCGGGCGTGTGTTTGGAAAGT
TCAGGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGAGGGCTGGAGCCTTG
CGTCGTGGTTATCGGCGTTTTTCTTGGGCTCAGTCAGGGTGGTTGGGGGA
AGGGGGAGAACGAGGACGAGGAGAAGGAGTGGGAGTCTATGTCCTGAGTG
TAGATGTCCATTTTCAACGTCCATTCCTGTGAGGAGGATAAATGATATAG
GTGCGTTTGTGTGTGTGTGCATTGCCTCCCTCTCTCCCTCTCTCCTCCTT
TCCGTCCTTCCCTTCGTTCCTTTCTACCCTTTTATTTTTCCCTTTCTTCC
TCTCTCCATCTCTCTACCCATCCGCTCCCACCCTGTGCAATTAGCATTTG
AGCACATCCGGATGTCGCTCTCGAACACTCACACCCCTTCCTTCCCCCTT
CCTTCTCTCCCTCCTTCCCTCCCTCCTTCCTTCCCTTACAGTCGAAAGTG
TCCGGCGGCTACTCCCGTCTCAATTCGAGGACGAAGATTTTCAAGAGCAA
GAGGAGAGGAACAGACACGCGGAGAGGGAGGGAGGGGCGGAAGGCGCGGA
GGATGCATTGCCGCCAGGAGGGAGGGAGGAGTCGATACCGGCCTGGTTCT
TCACATTTGTGTGTTTTGTGGTGGTGGTGGCGTTTGCCATTAA
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Synonyms
Publications