jgi.p|Nanoce1779_2|562601, mRNA_718 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|562601
Unique NamemRNA_718
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length351
Alignment locationscaffold_2:273287..274209 -

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Properties
Property NameValue
TranscriptId562687
TrackFilteredModels2
ProteinId562601
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:273287..274209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562601gene_718Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562601mRNA_718-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_718CDS_718Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_718 ID=mRNA_718|Name=jgi.p|Nanoce1779_2|562601|organism=Nannochloropsis oceanica|type=mRNA|length=351bp
ATGAAGCTTTCTTTGACGTGCCTGCTCCTCGTCGCCCTTCTCCTTGTCAT
GGGTAGTGATGGCTTTGTCCCGCGTGTCAAGGTAGGCTTTATGGAGCGCG
AACGGGTTGGTGGAGGGTTTAACTTCATGGAGATGGGCTCTCGGTTCCTG
AATGAGCTGTTGCCATGGGGCGACTCGAGCAAGGGCTTGTGGGCTGGGAA
GCGGGATGCGATGGTGGTCAAGTACATGGAGAAAACAGGCATCAATAGGG
AGCAGGCCGAGCGGGAGGTTGACGAATACCTGAAAGACAAAGACGCCTAC
ATCGCGAAGGCCCGCGCGGAGGAGGCGAAGCAAGCAAAAAATAAAAAATA
A
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protein sequence of jgi.p|Nanoce1779_2|562601

>mRNA_718-protein ID=mRNA_718-protein|Name=jgi.p|Nanoce1779_2|562601|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MKLSLTCLLLVALLLVMGSDGFVPRVKVGFMERERVGGGFNFMEMGSRFL
NELLPWGDSSKGLWAGKRDAMVVKYMEKTGINREQAEREVDEYLKDKDAY
IAKARAEEAKQAKNKK*
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mRNA from alignment at scaffold_2:273287..274209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_718 ID=mRNA_718|Name=jgi.p|Nanoce1779_2|562601|organism=Nannochloropsis oceanica|type=mRNA|length=923bp|location=Sequence derived from alignment at scaffold_2:273287..274209- (Nannochloropsis oceanica)
ATGAAGCTTTCTTTGACGTGCCTGCTCCTCGTCGCCCTTCTCCTTGTCAT
GGGTAGTGATGGCTTTGTCCCGCGTGTCAAGGTAGGCTTTATGGAGCGCG
AACGGGTTGGTAAGAGGAACAAGCACTCTATGCTTGAAGCCATGCATCCA
TTGGGGGAAGTAATGGACATGGAGGGAAGGCGAAACTTACATCAGAAGCA
GATCAAAAGAAGGCGATGATTTCTTAGCAGTCGTTGCAGGCGTCAAAAAT
GCGCAGCATTCTCATCATTCGAGTGCAAGGGCAGCATATTGTGGTAGGGC
ATACGAGAACGCTAAGGAAAGGCAGGAAGAGAGAAGGAACGTCGCAACGA
CGTATGCCCCATCTTTCGAACTTTTCCGTGAAACTCATGCCGTCACTAAC
GTGTAGATTATTTTGACATCGCAGGCCCCTGCCCGCAGCAGCCGCACCAT
CCTTCGGGAAGGTGGAGGGTTTAACTTCATGGAGATGGGCTCTCGGTTCC
TGAATGAGCTGTTGCCATGGGGCGACTCGAGCAAGGGCTTGTGGGCTGGG
AAGCGGGATGCGATGGTGGTCAAGTACATGGAGAAAACAGGTGAGGATTT
AGGATAAGAGGGACCGAGAAGATGGGTGATGTATTTCTTGCATGTGTGAA
ATAATGAAATGAGGGAGGAGGCTGACGTCAACTTGTCGAGGCGGCTTCTA
CGAGACGCCGAGGATGCGCAGGATGTGATCTTTTTATTTCGATATTTCAA
TTTCGCACGCTCTTATCAACTTTGCACACATCCATCTATCAAATCTTTGC
TCTACCAAAGGCATCAATAGGGAGCAGGCCGAGCGGGAGGTTGACGAATA
CCTGAAAGACAAAGACGCCTACATCGCGAAGGCCCGCGCGGAGGAGGCGA
AGCAAGCAAAAAATAAAAAATAA
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Coding sequence (CDS) from alignment at scaffold_2:273287..274209-

>mRNA_718 ID=mRNA_718|Name=jgi.p|Nanoce1779_2|562601|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_2:273287..274209- (Nannochloropsis oceanica)
GCATCAATAGGGAGCAGGCCGAGCGGGAGGTTGACGAATACCTGAAAGAC
AAAGACGCCTACATCGCGAAGGCCCGCGCGGAGGAGGCGAAGCAAGCAAA
AAATAAAAAATAAGTGGAGGGTTTAACTTCATGGAGATGGGCTCTCGGTT
CCTGAATGAGCTGTTGCCATGGGGCGACTCGAGCAAGGGCTTGTGGGCTG
GGAAGCGGGATGCGATGGTGGTCAAGTACATGGAGAAAACAGATGAAGCT
TTCTTTGACGTGCCTGCTCCTCGTCGCCCTTCTCCTTGTCATGGGTAGTG
ATGGCTTTGTCCCGCGTGTCAAGGTAGGCTTTATGGAGCGCGAACGGGTT
GGCATCAATAGGGAGCAGGCCGAGCGGGAGGTTGACGAATACCTGAAAGA
CAAAGACGCCTACATCGCGAAGGCCCGCGCGGAGGAGGCGAAGCAAGCAA
AAAATAAAAAATAAGTGGAGGGTTTAACTTCATGGAGATGGGCTCTCGGT
TCCTGAATGAGCTGTTGCCATGGGGCGACTCGAGCAAGGGCTTGTGGGCT
GGGAAGCGGGATGCGATGGTGGTCAAGTACATGGAGAAAACAGATGAAGC
TTTCTTTGACGTGCCTGCTCCTCGTCGCCCTTCTCCTTGTCATGGGTAGT
GATGGCTTTGTCCCGCGTGTCAAGGTAGGCTTTATGGAGCGCGAACGGGT
TGGCATCAATAGGGAGCAGGCCGAGCGGGAGGTTGACGAATACCTGAAAG
ACAAAGACGCCTACATCGCGAAGGCCCGCGCGGAGGAGGCGAAGCAAGCA
AAAAATAAAAAATAAGTGGAGGGTTTAACTTCATGGAGATGGGCTCTCGG
TTCCTGAATGAGCTGTTGCCATGGGGCGACTCGAGCAAGGGCTTGTGGGC
TGGGAAGCGGGATGCGATGGTGGTCAAGTACATGGAGAAAACAGATGAAG
CTTTCTTTGACGTGCCTGCTCCTCGTCGCCCTTCTCCTTGTCATGGGTAG
TGATGGCTTTGTCCCGCGTGTCAAGGTAGGCTTTATGGAGCGCGAACGGG
TTG
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Synonyms
Publications