jgi.p|Nanoce1779_2|567302, mRNA_7175 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|567302
Unique Name	mRNA_7175
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1293
Alignment location	scaffold_16:462459..463751 +

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Properties


Property Name	Value
TranscriptId	567388
Track	FilteredModels2
ProteinId	567302

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:462459..463751 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567302	gene_7175	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567302	mRNA_7175-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7175	CDS_7175	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:462459..463751+
coding sequence from alignment at scaffold_16:462459..463751+

mRNA sequence

>mRNA_7175 ID=mRNA_7175|Name=jgi.p|Nanoce1779_2|567302|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
ATGTCCTCCCCATTCTCCTCCCTCAAGAACACCACGATCACTACCACGAG
TGATCCTCCTGCTAACACAAATCCCACTGACGCTCCGAGCGGAAACAGCG
GCACTGTGGATAGCAGCAGCATAAACAGCGAGGCCACGCACCATGTGGAC
CTCCCCGTCTTACTCGGCCTCGACAGCGGCCGCCCCGCAAAAGTTCTGTA
CCCCTCCCGCATCCCCCATGACCATAACCTGCCCCTCGTCCTGGTCCTCC
ACGCTTGGGGAAGCAATGCCACCTATCACGCATCCTATCTCGGAGTGACT
GATCGAGTGCAACAATATAATTTCGTTGCCCTTCTTCCCAACGGGATCCT
AAATTCTAAAGGTTTCCGGTTCTGGAACGCCCCTGCTTGTTGCAACCGTG
AGAATATCGCCGTCGATGACCTCGGGTACCTCACTGATCTCCTTAACGAG
GCCAAGCGAAAGCTACCCATCGATCCTGAAAAAATCTTTGTCATCGGTCA
CTCGAATGGGGGGCAGATGGCTCTTTACCTCACCTGTCGCTACAATGAAT
CGGGGCGCATCCGAGGCCTTGTCTCCATCGCGGGCTTCAGCCTCCCCCCT
GGGTGTCAGCTGTCCCAACCTTCTTCTGCCTTATTCGTGCATGGGACAGA
GGATGACGTAGTACCCTACGAGTCAAGTGTCCAGGTTTTCAACCAGTGGG
TGGAACGCCAAAACTGCCTTCCCGAGCGAAACCCTGTGCTCCCTTCCTCC
TCCACCGTGTCGGCCTCGGCGTCGTCCATAGGTGCCTCGCGAGAGCCTCC
TTCCTCTATCCCCTTTTGTAAGCGCAGTAAGAACCCGGATCCTACATCAT
TGCTCTTGCCTCAGTCGCCTTCCTCCCTCATGTCCTCCGCTTCTTCCAAC
TGCACTCAATTTACCCGCGACTTCGACTGCGACTCGGGCAAGGCAAAAGG
GGTCAAGGACCCTACCTTTTCTAATTACCGTGACAGCAATTGTGGCTTAA
GCGGGAATGAAACGGTCATCACGCAGTACGTTGATTGTGGTATTGGGAGG
GAGGGGGGGGGGGAAGGAGGTGCGAATGTGACGTTTTGGAGGATGGATGG
GGCGACACACGTCCCTGCATTAAGCCCTGGGGCTCAGGATGAAATGATGA
CCTTCCTGTTGGGGCCTCCGTCTGTAACGACGAGTGAGAAAGAGGGAGGG
ATGAAGGAAAGAGCGGAAGAGCCAGGGGCAGAGCAGCAGAAGCTGGACAA
AGAGAAAATGAAGAAGAAGGGAAAGGAGAACCTGAGAGTATGA

protein sequence of jgi.p|Nanoce1779_2|567302

>mRNA_7175-protein ID=mRNA_7175-protein|Name=jgi.p|Nanoce1779_2|567302|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MSSPFSSLKNTTITTTSDPPANTNPTDAPSGNSGTVDSSSINSEATHHVD
LPVLLGLDSGRPAKVLYPSRIPHDHNLPLVLVLHAWGSNATYHASYLGVT
DRVQQYNFVALLPNGILNSKGFRFWNAPACCNRENIAVDDLGYLTDLLNE
AKRKLPIDPEKIFVIGHSNGGQMALYLTCRYNESGRIRGLVSIAGFSLPP
GCQLSQPSSALFVHGTEDDVVPYESSVQVFNQWVERQNCLPERNPVLPSS
STVSASASSIGASREPPSSIPFCKRSKNPDPTSLLLPQSPSSLMSSASSN
CTQFTRDFDCDSGKAKGVKDPTFSNYRDSNCGLSGNETVITQYVDCGIGR
EGGGEGGANVTFWRMDGATHVPALSPGAQDEMMTFLLGPPSVTTSEKEGG
MKERAEEPGAEQQKLDKEKMKKKGKENLRV*

mRNA from alignment at scaffold_16:462459..463751+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7175 ID=mRNA_7175|Name=jgi.p|Nanoce1779_2|567302|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp|location=Sequence derived from alignment at scaffold_16:462459..463751+ (Nannochloropsis oceanica)
ATGTCCTCCCCATTCTCCTCCCTCAAGAACACCACGATCACTACCACGAG
TGATCCTCCTGCTAACACAAATCCCACTGACGCTCCGAGCGGAAACAGCG
GCACTGTGGATAGCAGCAGCATAAACAGCGAGGCCACGCACCATGTGGAC
CTCCCCGTCTTACTCGGCCTCGACAGCGGCCGCCCCGCAAAAGTTCTGTA
CCCCTCCCGCATCCCCCATGACCATAACCTGCCCCTCGTCCTGGTCCTCC
ACGCTTGGGGAAGCAATGCCACCTATCACGCATCCTATCTCGGAGTGACT
GATCGAGTGCAACAATATAATTTCGTTGCCCTTCTTCCCAACGGGATCCT
AAATTCTAAAGGTTTCCGGTTCTGGAACGCCCCTGCTTGTTGCAACCGTG
AGAATATCGCCGTCGATGACCTCGGGTACCTCACTGATCTCCTTAACGAG
GCCAAGCGAAAGCTACCCATCGATCCTGAAAAAATCTTTGTCATCGGTCA
CTCGAATGGGGGGCAGATGGCTCTTTACCTCACCTGTCGCTACAATGAAT
CGGGGCGCATCCGAGGCCTTGTCTCCATCGCGGGCTTCAGCCTCCCCCCT
GGGTGTCAGCTGTCCCAACCTTCTTCTGCCTTATTCGTGCATGGGACAGA
GGATGACGTAGTACCCTACGAGTCAAGTGTCCAGGTTTTCAACCAGTGGG
TGGAACGCCAAAACTGCCTTCCCGAGCGAAACCCTGTGCTCCCTTCCTCC
TCCACCGTGTCGGCCTCGGCGTCGTCCATAGGTGCCTCGCGAGAGCCTCC
TTCCTCTATCCCCTTTTGTAAGCGCAGTAAGAACCCGGATCCTACATCAT
TGCTCTTGCCTCAGTCGCCTTCCTCCCTCATGTCCTCCGCTTCTTCCAAC
TGCACTCAATTTACCCGCGACTTCGACTGCGACTCGGGCAAGGCAAAAGG
GGTCAAGGACCCTACCTTTTCTAATTACCGTGACAGCAATTGTGGCTTAA
GCGGGAATGAAACGGTCATCACGCAGTACGTTGATTGTGGTATTGGGAGG
GAGGGGGGGGGGGAAGGAGGTGCGAATGTGACGTTTTGGAGGATGGATGG
GGCGACACACGTCCCTGCATTAAGCCCTGGGGCTCAGGATGAAATGATGA
CCTTCCTGTTGGGGCCTCCGTCTGTAACGACGAGTGAGAAAGAGGGAGGG
ATGAAGGAAAGAGCGGAAGAGCCAGGGGCAGAGCAGCAGAAGCTGGACAA
AGAGAAAATGAAGAAGAAGGGAAAGGAGAACCTGAGAGTATGA

Coding sequence (CDS) from alignment at scaffold_16:462459..463751+

>mRNA_7175 ID=mRNA_7175|Name=jgi.p|Nanoce1779_2|567302|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at scaffold_16:462459..463751+ (Nannochloropsis oceanica)
ATGTCCTCCCCATTCTCCTCCCTCAAGAACACCACGATCACTACCACGAG
TGATCCTCCTGCTAACACAAATCCCACTGACGCTCCGAGCGGAAACAGCG
GCACTGTGGATAGCAGCAGCATAAACAGCGAGGCCACGCACCATGTGGAC
CTCCCCGTCTTACTCGGCCTCGACAGCGGCCGCCCCGCAAAAGTTCTGTA
CCCCTCCCGCATCCCCCATGACCATAACCTGCCCCTCGTCCTGGTCCTCC
ACGCTTGGGGAAGCAATGCCACCTATCACGCATCCTATCTCGGAGTGACT
GATCGAGTGCAACAATATAATTTCGTTGCCCTTCTTCCCAACGGGATCCT
AAATTCTAAAGGTTTCCGGTTCTGGAACGCCCCTGCTTGTTGCAACCGTG
AGAATATCGCCGTCGATGACCTCGGGTACCTCACTGATCTCCTTAACGAG
GCCAAGCGAAAGCTACCCATCGATCCTGAAAAAATCTTTGTCATCGGTCA
CTCGAATGGGGGGCAGATGGCTCTTTACCTCACCTGTCGCTACAATGAAT
CGGGGCGCATCCGAGGCCTTGTCTCCATCGCGGGCTTCAGCCTCCCCCCT
GGGTGTCAGCTGTCCCAACCTTCTTCTGCCTTATTCGTGCATGGGACAGA
GGATGACGTAGTACCCTACGAGTCAAGTGTCCAGGTTTTCAACCAGTGGG
TGGAACGCCAAAACTGCCTTCCCGAGCGAAACCCTGTGCTCCCTTCCTCC
TCCACCGTGTCGGCCTCGGCGTCGTCCATAGGTGCCTCGCGAGAGCCTCC
TTCCTCTATCCCCTTTTGTAAGCGCAGTAAGAACCCGGATCCTACATCAT
TGCTCTTGCCTCAGTCGCCTTCCTCCCTCATGTCCTCCGCTTCTTCCAAC
TGCACTCAATTTACCCGCGACTTCGACTGCGACTCGGGCAAGGCAAAAGG
GGTCAAGGACCCTACCTTTTCTAATTACCGTGACAGCAATTGTGGCTTAA
GCGGGAATGAAACGGTCATCACGCAGTACGTTGATTGTGGTATTGGGAGG
GAGGGGGGGGGGGAAGGAGGTGCGAATGTGACGTTTTGGAGGATGGATGG
GGCGACACACGTCCCTGCATTAAGCCCTGGGGCTCAGGATGAAATGATGA
CCTTCCTGTTGGGGCCTCCGTCTGTAACGACGAGTGAGAAAGAGGGAGGG
ATGAAGGAAAGAGCGGAAGAGCCAGGGGCAGAGCAGCAGAAGCTGGACAA
AGAGAAAATGAAGAAGAAGGGAAAGGAGAACCTGAGAGTATGA

Synonyms

Publications