jgi.p|Nanoce1779_2|631704, mRNA_7174 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631704
Unique NamemRNA_7174
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2337
Alignment locationscaffold_16:454409..458527 +

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Properties
Property NameValue
TranscriptId631790
TrackFilteredModels2
ProteinId631704
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:454409..458527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631704gene_7174Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631704mRNA_7174-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7174CDS_7174Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7174 ID=mRNA_7174|Name=jgi.p|Nanoce1779_2|631704|organism=Nannochloropsis oceanica|type=mRNA|length=2337bp
GCAGCATCAGCACCAGCAGCAGCAGCAGCGTTATGCCCAAGCAAAACGAA
GCGTACACGTACCCTCAGTCGACAACTGGATCCCTTCCTAAAGGCCACCC
GTCTTCTTTCCTCCTTCCCTCCCTCTTCCTCCTCCTTCTTCCCCTCGTCC
TCCTCTTCGTCCTCTGTCTGTGAAGGCAGTCTTTCTACCTCCACGCCTAC
CATTTGACTGACCTCACAGTTATCACTCCCATGGTCCAGCACACTGAAGC
GCACCGGCAGCCAACCCCCTCCGCCCTTCCCTTCATCCCTCTCTCCCTCA
TTCTCCTCCATCATCGGAAAGTCCGTCCGTCGCCACAAACCGAACTCATT
GGCCAAAAACACCGACATCTCAATCCACTCCCCCCAGCACACACCTTCCC
TCCCTCCTTCCCTCCCTGCCAGCGGGGCGTCGCGGAAAGAGAGACGCAAG
GTCTGTGCCTCGTCCACTAACCCCTCTGCTTCCACTGCTGCTGCATCGCG
TGCTGCAGGCGTGGCAGACAATTGCGTTAAGTGCCTTGCTTGTGCCCGGA
GAGCGTGCAATGACTTGAGGAAGGAGGGAGGGAGGGAAGACGAGGAGGAG
GCGAGGGCATGGTTGAGCACACGGTGGGCGGTGGTGAAACGCTCACGGGC
AAGAAGGGCCGTGGCACGGCGGATAGAGGCTTTGGTATTGTGGGGATCGA
GACGAAGAGCAGCGGCGGCATCCAGGTCAGCGAGGACATATTCTCGAAGT
TGAAGCTGGGCTTGGGCTCGGTTGGAGAGAAGGATGGATGCAATGCTGGT
GTTGCCCGTGGTAGTCGTGGCAGTGACACTTACGTTGCTGCCTTGAATGG
TTGCGGTGGTGACAGACAGAGCCTCGGTCCAGGCAATGATGGCTTCTGAG
TACCGGCCTATATATATTTAGGTCCCGTGGGGAGGAGGGGGAAGAGATGA
AATAGACAGGGACTACTGCTCAAGCGTGCGGGTTGAAAAAGGTCTCGGCA
AAGATTTTAAATAGCCAACATTAAGAGAGGTACCAAAATTGCTATATTGG
ATTCTCTATAGCCAACTTTCACTGTGCGTCCTGTGGGAGGCCATGCTCTC
CTACGCCCCACGTCCTAGTGAAACCACGTACCTTGCTTATAACTTGTGTT
TCCTCTTTCCCGCAGCGCGTCCAGCACCACGGCGGGATCCTCATCGTTGT
CCTTCTGGTCGTTTACCATGCTGCTGTGGACAAGCGTTGTAGTGTGCTGA
GTTTGAGTTATGGGGTGGGGAGGTCTTAAAAGCAGAAAACTAGCGATTTT
GCGTCCCGTCGTATCCACACATACATAGCACCATGTTGCCTTCTTTCCTT
CCTTTCCTGTCATTTATCACTCAACTGCCTCCACGCCATACCATACATCA
TCAGACAGAAGTACTCTCTACCGCAGGGACGAGCTTCTAGCTAGGGCGTG
GTTGGAATTTGCCTCACACCAGAGCGCGCAAATACAGTAGCGGCCTTCGT
CCAGTCGAGGCACCTAGCAACCACATTTTCATTGCCTCGCCCTGTCTTAC
GATGGCGGACACTAATGGCGCACATGCGCCCACCGAGGAGGAGCAGCTTC
TGGAGGGCCATCAGGAGGAAGGGGAGGAGGAGTCAACTGCGACCACTGGC
GGAGGGGAAGAATTGGAAGGGTCCGAGCCTGCCGCTCCTGCCAAACGCCA
GCGGGAGGAAGACATGGAGCAGCAGAATCTAGAAGAGGATAGGGGGGGAG
ATGGGAAGCGAAACGAAGAAGACGCTGCCGGCACCACCGAGGAGTCGCAC
CCACAAGCCACGGAAGGCGGGAGGAGGCCCAAAAAGCAAGCGACGGACGC
CGGCCGGGAGGGCGACGCAGACAGCAACATAGCCTTTGCCAAGACGCATC
AACACACGGAGACCCTCGAGGTCGCCAAGGACGTAGTGGGGCGAATTATT
GGCAAGGGAGGAGAGACAATCCGTGACATCCAAACTCGTTCTGGGTGCCA
GTGTGTGATCGACCAGAACGTCCCCGACAATGAGCCACGCATCCTCACAA
TCGTGGGCAAGCCTGAAAATGTCGCCAATGCGATCAAGATGGTCGAGGCG
GTGAAGGAAGGGGGGCCTTCGATGCTGGCAGACTTCCCGGAGGTGGCTGG
GAACGTGAGGGCAACTGTAGATTGCCCGCGGGCGATAGTGGGGAGGTTGA
TAGGAAAAGGCGGCGACATCATTCGCGAGATCCAATATAAATCCAAAGCC
GTCATTCAGATCAATCAGAAGCTGCCACACGAGCAACCGTGCAAGGTCAC
CATCACCGGCGCGCCCAAGGCAGTTCAGACAGGATAA
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protein sequence of jgi.p|Nanoce1779_2|631704

>mRNA_7174-protein ID=mRNA_7174-protein|Name=jgi.p|Nanoce1779_2|631704|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MADTNGAHAPTEEEQLLEGHQEEGEEESTATTGGGEELEGSEPAAPAKRQ
REEDMEQQNLEEDRGGDGKRNEEDAAGTTEESHPQATEGGRRPKKQATDA
GREGDADSNIAFAKTHQHTETLEVAKDVVGRIIGKGGETIRDIQTRSGCQ
CVIDQNVPDNEPRILTIVGKPENVANAIKMVEAVKEGGPSMLADFPEVAG
NVRATVDCPRAIVGRLIGKGGDIIREIQYKSKAVIQINQKLPHEQPCKVT
ITGAPKAVQTG*
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mRNA from alignment at scaffold_16:454409..458527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7174 ID=mRNA_7174|Name=jgi.p|Nanoce1779_2|631704|organism=Nannochloropsis oceanica|type=mRNA|length=4119bp|location=Sequence derived from alignment at scaffold_16:454409..458527+ (Nannochloropsis oceanica)
GCAGCATCAGCACCAGCAGCAGCAGCAGCGTTATGCCCAAGCAAAACGAA GCGTACACGTACCCTCAGTCGACAACTGGATCCCTTCCTAAAGGCCACCC GTCTTCTTTCCTCCTTCCCTCCCTCTTCCTCCTCCTTCTTCCCCTCGTCC TCCTCTTCGTCCTCTGTCTGTGAAGGCAGTCTTTCTACCTCCACGCCTAC CATTTGACTGACCTCACAGTTATCACTCCCATGGTCCAGCACACTGAAGC GCACCGGCAGCCAACCCCCTCCGCCCTTCCCTTCATCCCTCTCTCCCTCA TTCTCCTCCATCATCGGAAAGTCCGTCCGTCGCCACAAACCGAACTCATT GGCCAAAAACACCGACATCTCAATCCACTCCCCCCAGCACACACCTTCCC TCCCTCCTTCCCTCCCTGCCAGCGGGGCGTCGCGGAAAGAGAGACGCAAG GTCTGTGCCTCGTCCACTAACCCCTCTGCTTCCACTGCTGCTGCATCGCG TGCTGCAGGCGTGGCAGACAATTGCGTTAAGTGCCTTGCTTGTGCCCGGA GAGCGTGCAATGACTTGAGGAAGGAGGGAGGGAGGGAAGACGAGGAGGAG GCGAGGGCATGGTTGAGCACACGGTGGGCGGTGGTGAAACGCTCACGGGC AAGAAGGGCCGTGGCACGGCGGATAGAGGCTTTGGTATTGTGGGGATCGA GACGAAGAGCAGCGGCGGCATCCAGGTCAGCGAGGACATATTCTCGAAGT TGAAGCTGGGCTTGGGCTCGGTTGGAGAGAAGGATGGATGCAATGCTGGT GTTGCCCGTGGTAGTCGTGGCAGTGACACTTACGTTGCTGCCTTGAATGG TTGCGGTGGTGACAGACAGAGCCTCGGTCCAGGCAATGATGGCTTCTGAG TACCGGCCTATATATATTTAGGTCCCGTGGGGAGGAGGGGGAAGAGATGA AATAGACAGGGACTACTGCTCAAGCGTGCGGGTTGAAAAAGGTCTCGGCA AAGATTTTAAATAGCCAACATTAAGAGAGGTACCAAAATTGCTATATTGG ATTCTCTATAGCCAACTTTCACTGTGCGTCCTGTGGGAGGCCATGCTCTC CTACGCCCCACGTCCTAGTGAAACCACGTACCTTGCTTATAACTTGTGTT TCCTCTTTCCCGCAGCGCGTCCAGCACCACGGCGGGATCCTCATCGTTGT CCTTCTGGTCGTTTACCATGCTGCTGTGGACAAGCGTTGTAGTGTGCTGA GTTTGAGTTATGGGGTGGGGAGGTCTTAAAAGCAGAAAACTAGCGATTTT GCGTCCCGTCGTATCCACACATACATAGCACCATGTTGCCTTCTTTCCTT CCTTTCCTGTCATTTATCACTCAACTGCCTCCACGCCATACCATACATCA TCAGACAGAAGTACTCTCTACCGCAGGGACGAGCTTCTAGCTAGGGCGTG GTTGGAATTTGCCTCACACCAGAGCGCGCAAATACAGTAGCGGCCTTCGT CCAGTCGAGGCACCTAGCAACCACATTTTCATTGCCTCGCCCTGTCTTAC GATGGCGGACACTAATGGCGCACATGCGCCCACCGAGGAGGAGCAGCTTC TGGAGGGCCATCAGGAGGAAGGGGAGGAGGAGTCAACTGCGACCACTGGC GGAGGGGAAGAATTGGAAGGGTCCGAGCCTGCCGCTCCTGCCAAACGCCA GCGGGAGGAAGACATGGAGCAGCAGAATCTAGAAGAGGATAGGGGGGGAG ATGGGAAGCGAAACGAAGAAGACGCTGCCGGCACCACCGAGGAGTCGCAC CCACAAGCCACGGAAGGCGGGAGGAGGCCCAAAAAGCAAGCGACGGACGC CGGCCGGGAGGGCGACGCAGACAGCAACATAGCCTTTGCCAAGACGCATC AACACACGGAGACCCTCGAGGTCGCCAAGGACGTAGTGGGGCGAATTATT GGCAAGGGAGGAGAGACAATCCGTGACATCCAAACTCGTTCTGGGTGCCA GGTGCGCACTGCAGTCCCTCCGTCATTCCCTCTTTATCTCCCTCTCTCCC TCCCTCCCTCCTCCCTCTTTCTTGCGATGAAAGATAAGTTAGCTGTGTAA GAAATCTCGACTTCGAATGGTCTCGAATCACACGTACTCTTTCCCAAAAA CATCCTTTCATTTATATGAAACGTACAGTGTGTGATCGACCAGAACGTCC CCGACAATGAGCCACGCATCCTCACAATCGTGGGCAAGCCTGAAAATGTC GCCAATGCGATCAAGATGGTCGAGGCGGTGAAGGAAGGGGGGCCTTCGAT GCTGGCAGACTTCCCGGAGGTGGCTGGGAACGTGAGGGCAACTGTAGATT GCCCGCGGGCGATAGTGGGGAGGTTGATAGGAAAAGGCGGCGACATCATT CGGTACGTCCTTCACTCCCCCAATCGACCTTTCACTTGATCCATTCACCC ATCCACCTGCTTGTCTCATTCCCGCATCCTTGCGTATGTCGCGGTCATAT CCTGGCATTCGATCCGATCCCGCGGACGGCCTTGTGTGGGGCTGGTGGGT CTTGCATCCACTCACCTTTCCCTCCCTCACTCCCTCCCTCTCTCCCCCAC AGCGAGATCCAATATAAATCCAAAGCCGTCATTCAGATCAATCAGAAGCT GCCACACGAGCAACCGTGCAAGGTCACCATCACCGGCGCGCCCAAGGCAG TTCAGACAGGTCCGTATGTGCCCATTTCCTCTTCTTCCCTCCTTCCCTCC TTCCCTCCATACCAGCACTATCATATCTGTTTTCCCTTCCGTCTCCTCCT CTCGTCTCCATTGTTTATAGCTCCCTGCACCCATCATTGTCACGTTATAA CCCTCCTCCCAACACTCCCTTCTGCCCCTCCCTCCCTCCCTCCTCTCTTA GCCCGGGAGATCATAATCGCCATCATGGAGCAGGGTGTCCAGGCCATCCA TCTCTTCCCAGGCGGAACCGCCCCGAGCAATAGCGGCAGCAATTTCTTCA GCGGGGGTGACAGGGGAGGAGGGGGAGGGTGGGAGGGAGGGAGGGGGGGA GGAGGCGGCGGCGGAGGAGGAGGAGGATCGAGGTTGTACACCATCCCTAT CGAAGGAATGGCGTCTGCGATTGACGTCCCGAAAAGCCAGGTGGGAAAAA TCATTGGAAAAGGAGGGGAAATTGTCGGGCTGATTCAAGAGAAGAGTGGC TGCCGGCTGCAGATAGCTCAGGACGTTCCTGAGGGGATGCCATGCCGCGT GGCGATACTGGGGGGGAGGGAGGGAGGGGCGGCGTATGTGTGTGAGATCA TTCAGGCGATCATTGATAGGGGCCCTCCGTGCGTGCATGACTTTCCCCCC TTTGAGGGGGTAGGGCGGGGGGCAGGGAGGGGGGGAGTGGGGGAGGGGGG AGGGTATGGAAGGGGAGGGGGGGGGGGGGGGAGGGGATGGGGAGGGAGGG AGAGAGAAGCACCGCCACAGTACACCGGAGGGAGAGATCTGGCGGGAGGG GGCGGGGGAGGAGGATGGGGGGGAGGAGGATGGGCGGGAGGAGGGGGAAG GGGAGGGGGGGGTTACCATGGAGGGGGAGGGTCAGGGCCTTATGGAGGGG GAGGGGGAGGGTGGGGAGGAGGAGGAGGAGGGGGAAGCTATCAGCAGTAT CAGCAGTACCAGCAGCAGATACCAGCAACGATGATGCAGCAGCCGCTGCT ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGGAGGAGTAA GAGGGGGGGCTTATGCGGCTGCTCCTGCTGTGGCGGGTGCTGCTGTTTCT GGAGGCAGGGCAGGAGGAGGAGGAGGAGGAGGGGGAGGGGGTGGGGGAGG CGCCCAATCTGGGTGGAGAGAGTGTAAGGCAGCGGATGGGACTCCATATT GGTACAACGCTGCAAGTGGCGTGTCGCAATGGCATCGGCCTTAATAGGGA GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGCGTGGTGGTGGTGGT TATGGGTTGATTCTTGCGACGGAGTGTCGCAGCGACATGGGACAAAGGAA GGGATGGGGGGGGGACGGGGAGGGAAGGAAGGAGGGATTAATGTCGTAGT GGCGTTGCCCGTAGGATAA
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Coding sequence (CDS) from alignment at scaffold_16:454409..458527+

>mRNA_7174 ID=mRNA_7174|Name=jgi.p|Nanoce1779_2|631704|organism=Nannochloropsis oceanica|type=CDS|length=3144bp|location=Sequence derived from alignment at scaffold_16:454409..458527+ (Nannochloropsis oceanica)
ATGGCGGACACTAATGGCGCACATGCGCCCACCGAGGAGGAGCAGCTTCT
GGAGGGCCATCAGGAGGAAGGGGAGGAGGAGTCAACTGCGACCACTGGCG
GAGGGGAAGAATTGGAAGGGTCCGAGCCTGCCGCTCCTGCCAAACGCCAG
CGGGAGGAAGACATGGAGCAGCAGAATCTAGAAGAGGATAGGGGGGGAGA
TGGGAAGCGAAACGAAGAAGACGCTGCCGGCACCACCGAGGAGTCGCACC
CACAAGCCACGGAAGGCGGGAGGAGGCCCAAAAAGCAAGCGACGGACGCC
GGCCGGGAGGGCGACGCAGACAGCAACATAGCCTTTGCCAAGACGCATCA
ACACACGGAGACCCTCGAGGTCGCCAAGGACGTAGTGGGGCGAATTATTG
GCAAGGGAGGAGAGACAATCCGTGACATCCAAACTCGTTCTGGGTGCCAG
TGTGTGATCGACCAGAACGTCCCCGACAATGAGCCACGCATCCTCACAAT
CGTGGGCAAGCCTGAAAATGTCGCCAATGCGATCAAGATGGTCGAGGCGG
TGAAGGAAGGGGGGCCTTCGATGCTGGCAGACTTCCCGGAGGTGGCTGGG
AACGTGAGGGCAACTGTAGATTGCCCGCGGGCGATAGTGGGGAGGTTGAT
AGGAAAAGGCGGCGACATCATTCGCGAGATCCAATATAAATCCAAAGCCG
TCATTCAGATCAATCAGAAGCTGCCACACGAGCAACCGTGCAAGGTCACC
ATCACCGGCGCGCCCAAGGCAGTTCAGACAGGATAAATGGCGGACACTAA
TGGCGCACATGCGCCCACCGAGGAGGAGCAGCTTCTGGAGGGCCATCAGG
AGGAAGGGGAGGAGGAGTCAACTGCGACCACTGGCGGAGGGGAAGAATTG
GAAGGGTCCGAGCCTGCCGCTCCTGCCAAACGCCAGCGGGAGGAAGACAT
GGAGCAGCAGAATCTAGAAGAGGATAGGGGGGGAGATGGGAAGCGAAACG
AAGAAGACGCTGCCGGCACCACCGAGGAGTCGCACCCACAAGCCACGGAA
GGCGGGAGGAGGCCCAAAAAGCAAGCGACGGACGCCGGCCGGGAGGGCGA
CGCAGACAGCAACATAGCCTTTGCCAAGACGCATCAACACACGGAGACCC
TCGAGGTCGCCAAGGACGTAGTGGGGCGAATTATTGGCAAGGGAGGAGAG
ACAATCCGTGACATCCAAACTCGTTCTGGGTGCCAGTGTGTGATCGACCA
GAACGTCCCCGACAATGAGCCACGCATCCTCACAATCGTGGGCAAGCCTG
AAAATGTCGCCAATGCGATCAAGATGGTCGAGGCGGTGAAGGAAGGGGGG
CCTTCGATGCTGGCAGACTTCCCGGAGGTGGCTGGGAACGTGAGGGCAAC
TGTAGATTGCCCGCGGGCGATAGTGGGGAGGTTGATAGGAAAAGGCGGCG
ACATCATTCGCGAGATCCAATATAAATCCAAAGCCGTCATTCAGATCAAT
CAGAAGCTGCCACACGAGCAACCGTGCAAGGTCACCATCACCGGCGCGCC
CAAGGCAGTTCAGACAGGATAAATGGCGGACACTAATGGCGCACATGCGC
CCACCGAGGAGGAGCAGCTTCTGGAGGGCCATCAGGAGGAAGGGGAGGAG
GAGTCAACTGCGACCACTGGCGGAGGGGAAGAATTGGAAGGGTCCGAGCC
TGCCGCTCCTGCCAAACGCCAGCGGGAGGAAGACATGGAGCAGCAGAATC
TAGAAGAGGATAGGGGGGGAGATGGGAAGCGAAACGAAGAAGACGCTGCC
GGCACCACCGAGGAGTCGCACCCACAAGCCACGGAAGGCGGGAGGAGGCC
CAAAAAGCAAGCGACGGACGCCGGCCGGGAGGGCGACGCAGACAGCAACA
TAGCCTTTGCCAAGACGCATCAACACACGGAGACCCTCGAGGTCGCCAAG
GACGTAGTGGGGCGAATTATTGGCAAGGGAGGAGAGACAATCCGTGACAT
CCAAACTCGTTCTGGGTGCCAGTGTGTGATCGACCAGAACGTCCCCGACA
ATGAGCCACGCATCCTCACAATCGTGGGCAAGCCTGAAAATGTCGCCAAT
GCGATCAAGATGGTCGAGGCGGTGAAGGAAGGGGGGCCTTCGATGCTGGC
AGACTTCCCGGAGGTGGCTGGGAACGTGAGGGCAACTGTAGATTGCCCGC
GGGCGATAGTGGGGAGGTTGATAGGAAAAGGCGGCGACATCATTCGCGAG
ATCCAATATAAATCCAAAGCCGTCATTCAGATCAATCAGAAGCTGCCACA
CGAGCAACCGTGCAAGGTCACCATCACCGGCGCGCCCAAGGCAGTTCAGA
CAGGATAAATGGCGGACACTAATGGCGCACATGCGCCCACCGAGGAGGAG
CAGCTTCTGGAGGGCCATCAGGAGGAAGGGGAGGAGGAGTCAACTGCGAC
CACTGGCGGAGGGGAAGAATTGGAAGGGTCCGAGCCTGCCGCTCCTGCCA
AACGCCAGCGGGAGGAAGACATGGAGCAGCAGAATCTAGAAGAGGATAGG
GGGGGAGATGGGAAGCGAAACGAAGAAGACGCTGCCGGCACCACCGAGGA
GTCGCACCCACAAGCCACGGAAGGCGGGAGGAGGCCCAAAAAGCAAGCGA
CGGACGCCGGCCGGGAGGGCGACGCAGACAGCAACATAGCCTTTGCCAAG
ACGCATCAACACACGGAGACCCTCGAGGTCGCCAAGGACGTAGTGGGGCG
AATTATTGGCAAGGGAGGAGAGACAATCCGTGACATCCAAACTCGTTCTG
GGTGCCAGTGTGTGATCGACCAGAACGTCCCCGACAATGAGCCACGCATC
CTCACAATCGTGGGCAAGCCTGAAAATGTCGCCAATGCGATCAAGATGGT
CGAGGCGGTGAAGGAAGGGGGGCCTTCGATGCTGGCAGACTTCCCGGAGG
TGGCTGGGAACGTGAGGGCAACTGTAGATTGCCCGCGGGCGATAGTGGGG
AGGTTGATAGGAAAAGGCGGCGACATCATTCGCGAGATCCAATATAAATC
CAAAGCCGTCATTCAGATCAATCAGAAGCTGCCACACGAGCAACCGTGCA
AGGTCACCATCACCGGCGCGCCCAAGGCAGTTCAGACAGGATAA
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Synonyms
Publications