jgi.p|Nanoce1779_2|557622, mRNA_7172 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557622
Unique Name	mRNA_7172
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2405
Alignment location	scaffold_16:449634..452038 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557708
Track	FilteredModels2
ProteinId	557622

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:449634..452038 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557622	gene_7172	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557622	mRNA_7172-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7172	CDS_7172	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:449634..452038+
coding sequence from alignment at scaffold_16:449634..452038+

mRNA sequence

>mRNA_7172 ID=mRNA_7172|Name=jgi.p|Nanoce1779_2|557622|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp
GAGGCCTGTACCTGTGAATGTATGCACCATGCACCAACCACACCAGCATC
AGGGGACCTGGACACACTTTTTCACATCTCAAATCCCATTCCTGCTATGA
ATTCAAACGGCAACTAGGGAGCGCTGGGTGTCTCGCGTTTGACCGTTTTC
GTCTCCTGCCAGTACACTGCTTCCTCCGCCCTCCGACCCCCTCCCCAAGC
ATACCTTACTTTGCACCACACACACCAGCAGAGGACTTCAAGAAGACAAG
ACCCTTGAGACTCCGAACGGAAACATTCTATTTCCACCGGGGGGGAAATG
AAGCTGACTTCTTTTTGGCCTCCGGCCGATGCATACTGGGCAACCATCTT
CTTCCCCGCCTTGTTTGGATACTTGGTGCTGTTGCAGGCCACAATGAATC
GCCGCCCTAGCTTGGGGAGTGTGGAGAGGGTGAAACCTGCGGCTATCGAC
ACATTGATTGCGCCGGATGCCTGTTTGGAAGTGATTGCCGAGGGGAATCT
ATGGGCGGAGGGACCCTTGTGGGTGACGGACAAGGACGACAGTGTGGATG
GTGGGTTCTTACTGTGGAGCGACGTGAAGAAGAATCGGATCTATCGGTGG
GAGGAGGGCGGCGGCTTGTTTACGATTGGAAAGAGTGTGTATTTGGAGGA
AAGTGGCTGTCGGTTCTCACCAGCTGATAATAGCAGCAGCAGCAGTGTTC
GTGATGCCGCGCGGTGTGCGGCGTTGCGTGAACCGGGGTCGAATGGCCTG
GCTTTGGAACCAGGGACAGGGCTGGTGGTCATGTGCATGCATGGAGGGAG
ACGTGTGGCGAGGTTGGAAACGAACGGGACATTCACTCCCTTGGCAACGC
ACTACAAGGGGCGGAAATTGAATTCCCCCAACGACCTGGTGTTTGGGCCT
GGGGGGGACCTGTACTTTACCGACCCTCCCTACGGCTTGAATGGGATAGA
TGGGGATTCCGAGAGGGAGTTGGCAATAAGTGGTGTCTACCGATTGTCGG
CAGCGGCCATGCAGAAGCAGCAGCAGTTGCTGCAAGGGCAGGGGATGGAG
GGGGAGGAGAGGGGGAGTGAGGAGGTGGAGTTGGTTTTGGGGGGGTTGAA
GCGACCGAATGGCTTGGCGTTTTCTCCCGACTTTAAGAAGCTGTATGTCG
GGAATAGTGGTGCGGAGAATCCTCATTGGGTTGTCGTAGATATGGACCCT
ACCACAGGTCTCAGAGCCGAGGGTGGGAGGGAGGGAGGGGAGGTGTTTGC
CTTAGCTGGTCAATTCCAAGAGGAGGGAAAGAGGGTTGGAAGCCCGGATG
GAATGAAGGTGGATGAGAAGGGAAATTTGTGGACGACAGGGCCAGGGGGG
GTGTTGATCTTGACGCCTTCGGGAGAGCGGGTGGGGACGATTCTGACCGG
GAAGAAGACGGGAAACGTGGCGTTTGGAGGGGTGGAGAAGGAGAAGGGGG
GAAGGGGGAGGTTTTTGTATGTGTGTGCCGATGATGTGGTGGCACGAATT
CCGGTTTTGGTGGGCCCGGCGCCGGCTCCGCCGCTGGCAAGACCTGCGGC
TGCTGCTGCCACCAGTTCGGTGGAGGAGAAGGAGAAGGGGGAGTGTGCAG
AGGCGAATGGGAAGGTCACAGCAGGAGGGTGATTGTTGAGGCCAAAATGA
CGCAAAGAAAAAAATGAATGTGTACAAGAAGTGAAGGGTCACATGCATGG
AACTACGTGCAGAAGCGTCGCCTTCAACACGGCGAAAACGCAATCAGAAC
GTTCTGTTGGTGGAAGAGACCCCGTCCTCCCACTCACGTCCAATCCATAT
CTCCCCCACTCCAAACACAGGCATGATGCTTCTGCACCACCACCACCGCC
ACTACGCCACTCCTAGCCTTAAGCTGCTAGCAATAGTTATCCTTTCCTTA
CTTTTTGTGCCCACGAAAGCCTTCTGGCCACCACCTTCCTCCCCTTCTCC
TTGCATTCTCCGGCAGCAGTCTCGGTACCACCATCCGCCACGCATTCTCT
CTGCCATAACCCACAACACCGACGACCTCCAGCAACCCCTCCCGCCCTCC
CTCCCTCCCCCTCTTCTCCTTCACATCGCCTACGACGGTAGTCAATACAA
AGTCTGGAAGGACAAAGTGATACACGACTCAACCCTACCCCTATCTAGCG
ATGGCAAGAACGGCGCCAAAAGCAACAACAACAGTAATAGGAATATAAAG
AGTGTCCGAAGAAAAAAAGGGTTCTTCGCCAACCATCCTCCTTCCCTCCA
CCATCGTCTTGGCACCGCCCTTTCCATCATTCACTCTCACGCCCCCCTTG
CCTCCCTCCTCCTCACTCCCGCAATCACCACCTCTGGGGGGGTCCACGCC
CGGGCGCAACTGCTTTCCTATCAACCACCTTGCAGCAGCAGCAGCAGCAG
CAGCA

protein sequence of jgi.p|Nanoce1779_2|557622

>mRNA_7172-protein ID=mRNA_7172-protein|Name=jgi.p|Nanoce1779_2|557622|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MKLTSFWPPADAYWATIFFPALFGYLVLLQATMNRRPSLGSVERVKPAAI
DTLIAPDACLEVIAEGNLWAEGPLWVTDKDDSVDGGFLLWSDVKKNRIYR
WEEGGGLFTIGKSVYLEESGCRFSPADNSSSSSVRDAARCAALREPGSNG
LALEPGTGLVVMCMHGGRRVARLETNGTFTPLATHYKGRKLNSPNDLVFG
PGGDLYFTDPPYGLNGIDGDSERELAISGVYRLSAAAMQKQQQLLQGQGM
EGEERGSEEVELVLGGLKRPNGLAFSPDFKKLYVGNSGAENPHWVVVDMD
PTTGLRAEGGREGGEVFALAGQFQEEGKRVGSPDGMKVDEKGNLWTTGPG
GVLILTPSGERVGTILTGKKTGNVAFGGVEKEKGGRGRFLYVCADDVVAR
IPVLVGPAPAPPLARPAAAAATSSVEEKEKGECAEANGKVTAGG*

mRNA from alignment at scaffold_16:449634..452038+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7172 ID=mRNA_7172|Name=jgi.p|Nanoce1779_2|557622|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp|location=Sequence derived from alignment at scaffold_16:449634..452038+ (Nannochloropsis oceanica)
GAGGCCTGTACCTGTGAATGTATGCACCATGCACCAACCACACCAGCATC
AGGGGACCTGGACACACTTTTTCACATCTCAAATCCCATTCCTGCTATGA
ATTCAAACGGCAACTAGGGAGCGCTGGGTGTCTCGCGTTTGACCGTTTTC
GTCTCCTGCCAGTACACTGCTTCCTCCGCCCTCCGACCCCCTCCCCAAGC
ATACCTTACTTTGCACCACACACACCAGCAGAGGACTTCAAGAAGACAAG
ACCCTTGAGACTCCGAACGGAAACATTCTATTTCCACCGGGGGGGAAATG
AAGCTGACTTCTTTTTGGCCTCCGGCCGATGCATACTGGGCAACCATCTT
CTTCCCCGCCTTGTTTGGATACTTGGTGCTGTTGCAGGCCACAATGAATC
GCCGCCCTAGCTTGGGGAGTGTGGAGAGGGTGAAACCTGCGGCTATCGAC
ACATTGATTGCGCCGGATGCCTGTTTGGAAGTGATTGCCGAGGGGAATCT
ATGGGCGGAGGGACCCTTGTGGGTGACGGACAAGGACGACAGTGTGGATG
GTGGGTTCTTACTGTGGAGCGACGTGAAGAAGAATCGGATCTATCGGTGG
GAGGAGGGCGGCGGCTTGTTTACGATTGGAAAGAGTGTGTATTTGGAGGA
AAGTGGCTGTCGGTTCTCACCAGCTGATAATAGCAGCAGCAGCAGTGTTC
GTGATGCCGCGCGGTGTGCGGCGTTGCGTGAACCGGGGTCGAATGGCCTG
GCTTTGGAACCAGGGACAGGGCTGGTGGTCATGTGCATGCATGGAGGGAG
ACGTGTGGCGAGGTTGGAAACGAACGGGACATTCACTCCCTTGGCAACGC
ACTACAAGGGGCGGAAATTGAATTCCCCCAACGACCTGGTGTTTGGGCCT
GGGGGGGACCTGTACTTTACCGACCCTCCCTACGGCTTGAATGGGATAGA
TGGGGATTCCGAGAGGGAGTTGGCAATAAGTGGTGTCTACCGATTGTCGG
CAGCGGCCATGCAGAAGCAGCAGCAGTTGCTGCAAGGGCAGGGGATGGAG
GGGGAGGAGAGGGGGAGTGAGGAGGTGGAGTTGGTTTTGGGGGGGTTGAA
GCGACCGAATGGCTTGGCGTTTTCTCCCGACTTTAAGAAGCTGTATGTCG
GGAATAGTGGTGCGGAGAATCCTCATTGGGTTGTCGTAGATATGGACCCT
ACCACAGGTCTCAGAGCCGAGGGTGGGAGGGAGGGAGGGGAGGTGTTTGC
CTTAGCTGGTCAATTCCAAGAGGAGGGAAAGAGGGTTGGAAGCCCGGATG
GAATGAAGGTGGATGAGAAGGGAAATTTGTGGACGACAGGGCCAGGGGGG
GTGTTGATCTTGACGCCTTCGGGAGAGCGGGTGGGGACGATTCTGACCGG
GAAGAAGACGGGAAACGTGGCGTTTGGAGGGGTGGAGAAGGAGAAGGGGG
GAAGGGGGAGGTTTTTGTATGTGTGTGCCGATGATGTGGTGGCACGAATT
CCGGTTTTGGTGGGCCCGGCGCCGGCTCCGCCGCTGGCAAGACCTGCGGC
TGCTGCTGCCACCAGTTCGGTGGAGGAGAAGGAGAAGGGGGAGTGTGCAG
AGGCGAATGGGAAGGTCACAGCAGGAGGGTGATTGTTGAGGCCAAAATGA
CGCAAAGAAAAAAATGAATGTGTACAAGAAGTGAAGGGTCACATGCATGG
AACTACGTGCAGAAGCGTCGCCTTCAACACGGCGAAAACGCAATCAGAAC
GTTCTGTTGGTGGAAGAGACCCCGTCCTCCCACTCACGTCCAATCCATAT
CTCCCCCACTCCAAACACAGGCATGATGCTTCTGCACCACCACCACCGCC
ACTACGCCACTCCTAGCCTTAAGCTGCTAGCAATAGTTATCCTTTCCTTA
CTTTTTGTGCCCACGAAAGCCTTCTGGCCACCACCTTCCTCCCCTTCTCC
TTGCATTCTCCGGCAGCAGTCTCGGTACCACCATCCGCCACGCATTCTCT
CTGCCATAACCCACAACACCGACGACCTCCAGCAACCCCTCCCGCCCTCC
CTCCCTCCCCCTCTTCTCCTTCACATCGCCTACGACGGTAGTCAATACAA
AGTCTGGAAGGACAAAGTGATACACGACTCAACCCTACCCCTATCTAGCG
ATGGCAAGAACGGCGCCAAAAGCAACAACAACAGTAATAGGAATATAAAG
AGTGTCCGAAGAAAAAAAGGGTTCTTCGCCAACCATCCTCCTTCCCTCCA
CCATCGTCTTGGCACCGCCCTTTCCATCATTCACTCTCACGCCCCCCTTG
CCTCCCTCCTCCTCACTCCCGCAATCACCACCTCTGGGGGGGTCCACGCC
CGGGCGCAACTGCTTTCCTATCAACCACCTTGCAGCAGCAGCAGCAGCAG
CAGCA

Coding sequence (CDS) from alignment at scaffold_16:449634..452038+

>mRNA_7172 ID=mRNA_7172|Name=jgi.p|Nanoce1779_2|557622|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at scaffold_16:449634..452038+ (Nannochloropsis oceanica)
ATGAAGCTGACTTCTTTTTGGCCTCCGGCCGATGCATACTGGGCAACCAT
CTTCTTCCCCGCCTTGTTTGGATACTTGGTGCTGTTGCAGGCCACAATGA
ATCGCCGCCCTAGCTTGGGGAGTGTGGAGAGGGTGAAACCTGCGGCTATC
GACACATTGATTGCGCCGGATGCCTGTTTGGAAGTGATTGCCGAGGGGAA
TCTATGGGCGGAGGGACCCTTGTGGGTGACGGACAAGGACGACAGTGTGG
ATGGTGGGTTCTTACTGTGGAGCGACGTGAAGAAGAATCGGATCTATCGG
TGGGAGGAGGGCGGCGGCTTGTTTACGATTGGAAAGAGTGTGTATTTGGA
GGAAAGTGGCTGTCGGTTCTCACCAGCTGATAATAGCAGCAGCAGCAGTG
TTCGTGATGCCGCGCGGTGTGCGGCGTTGCGTGAACCGGGGTCGAATGGC
CTGGCTTTGGAACCAGGGACAGGGCTGGTGGTCATGTGCATGCATGGAGG
GAGACGTGTGGCGAGGTTGGAAACGAACGGGACATTCACTCCCTTGGCAA
CGCACTACAAGGGGCGGAAATTGAATTCCCCCAACGACCTGGTGTTTGGG
CCTGGGGGGGACCTGTACTTTACCGACCCTCCCTACGGCTTGAATGGGAT
AGATGGGGATTCCGAGAGGGAGTTGGCAATAAGTGGTGTCTACCGATTGT
CGGCAGCGGCCATGCAGAAGCAGCAGCAGTTGCTGCAAGGGCAGGGGATG
GAGGGGGAGGAGAGGGGGAGTGAGGAGGTGGAGTTGGTTTTGGGGGGGTT
GAAGCGACCGAATGGCTTGGCGTTTTCTCCCGACTTTAAGAAGCTGTATG
TCGGGAATAGTGGTGCGGAGAATCCTCATTGGGTTGTCGTAGATATGGAC
CCTACCACAGGTCTCAGAGCCGAGGGTGGGAGGGAGGGAGGGGAGGTGTT
TGCCTTAGCTGGTCAATTCCAAGAGGAGGGAAAGAGGGTTGGAAGCCCGG
ATGGAATGAAGGTGGATGAGAAGGGAAATTTGTGGACGACAGGGCCAGGG
GGGGTGTTGATCTTGACGCCTTCGGGAGAGCGGGTGGGGACGATTCTGAC
CGGGAAGAAGACGGGAAACGTGGCGTTTGGAGGGGTGGAGAAGGAGAAGG
GGGGAAGGGGGAGGTTTTTGTATGTGTGTGCCGATGATGTGGTGGCACGA
ATTCCGGTTTTGGTGGGCCCGGCGCCGGCTCCGCCGCTGGCAAGACCTGC
GGCTGCTGCTGCCACCAGTTCGGTGGAGGAGAAGGAGAAGGGGGAGTGTG
CAGAGGCGAATGGGAAGGTCACAGCAGGAGGGTGA

Synonyms

Publications