jgi.p|Nanoce1779_2|623645, mRNA_7169 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|623645
Unique Name	mRNA_7169
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1386
Alignment location	scaffold_16:441322..443118 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	623731
Track	FilteredModels2
ProteinId	623645

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:441322..443118 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623645	gene_7169	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623645	mRNA_7169-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7169	CDS_7169	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:441322..443118+
coding sequence from alignment at scaffold_16:441322..443118+

mRNA sequence

>mRNA_7169 ID=mRNA_7169|Name=jgi.p|Nanoce1779_2|623645|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
ATGTCTGACCCTTACGCTGATTTTGGTGCCCCACACGATTGGTACTCTCA
AGCCCGAAAGCTCAAGCGGAGCTTGATTTTGCACGTCGGGCCGACCAACG
CAGGCAAGACGCACGAGGCACTCGAACGGTTGCAGGCTGCGGCAAGTGGC
ATCTATTGCGGTCCCTTGCGGTTGCTCGCGTGGGAGGTGTATGAGAAGTT
AAATATGAATGGTGTGCTCTGCGAGCTGTGGACGGGACAGGAAGTGAAGG
AGATTGAAGGGAGTCGGCACGTGAGCTGCACAGTCGAGATGGCAGACATA
ACAAGGGTGTATGACGTGGCTGTGGTGGATGAGTGCCAGTTATTGGGAGA
CAAAGAGAGAGGCTGGGCCTGGACAAGGGCCATCTTAGGCTTACCTGCCG
TGGAGCTGCACTTGTGTGGCTCACCTGCCTTTGTTGAGATTGTGCACGAG
CTTGCGAATGAATTGGGAGATATTGTGGAAGTCCGCAAATATGAACGCTT
AAGCCCTCTGCAACCACAAAGAGAAGCTGTGGGGAGTTGGGCAGAGATAA
GGCCTGGTGACTGCGTGGTGGCGTTTAGTCGGAAGAGGCTCTTTCAGCTG
AAGAATGAGATTGAGGTTGCGACATTTCCGAGGATGAAGTGTTGCATTGT
GTATGGGGGATTGCCCCCGGAGGCCAGGAGGGAGCAGGCACGGCTTTTCA
ATGAGGAGGGGAGTGGGTGGAATGTGCTGGTGGCGAGTGATGCGATCGGC
ATGGGCCTTAATCTTTCCATCGGCCGAATTATCTTCTCCTCTCTTGAAAA
GTATGACGGCAAAACCAATCGTCAATTGACCCATGCAGAGATCAAGCAAA
TCGCTGGGAGGGCCGGCCGATTTAAGGGAAAGTACGAGATAGGAACAGTT
GCAGGCCGGGAAGGCGGAGACGTCCGCATCATCTCCCGCGCATTGAAAGC
GGAGCACGACGTGATCGAGTCGGCGGGCCTAAAGCCCTCCAAAGAACAGT
TGCTGATGTTCGCCAAAGCCAATGGATTGAAGATAAGAGAGACCGAAGAA
GATTATGCGATGGCTTGGGAAGAGAAACGGCAAGGCGGTGAAGGAAGGAG
GGAGGAAGAAAGAGGAGGAGGAACCCCGAGTAGCTACACAGAATTCACTG
TCTTGCTCAAATTATTTGTCCACGCCGCGTCTACCCTCGGCTCCCGGGCC
CAGGACCTTTATTTCCTGTGTGACCTTACTGACATGCTCGGGGTTGCGAG
ACTCATCGAAGAAATACCCCTGAATTTCAAAGACCGCTTCACCTTCTGTA
TCGCCCCTGTGGACACCAAGCAAGCCGAGCTTATGTCTTACCTTCGTTTT
TTTCGCCCGGCAGTACCAACACAAAAAAGAAGTTAA

protein sequence of jgi.p|Nanoce1779_2|623645

>mRNA_7169-protein ID=mRNA_7169-protein|Name=jgi.p|Nanoce1779_2|623645|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MSDPYADFGAPHDWYSQARKLKRSLILHVGPTNAGKTHEALERLQAAASG
IYCGPLRLLAWEVYEKLNMNGVLCELWTGQEVKEIEGSRHVSCTVEMADI
TRVYDVAVVDECQLLGDKERGWAWTRAILGLPAVELHLCGSPAFVEIVHE
LANELGDIVEVRKYERLSPLQPQREAVGSWAEIRPGDCVVAFSRKRLFQL
KNEIEVATFPRMKCCIVYGGLPPEARREQARLFNEEGSGWNVLVASDAIG
MGLNLSIGRIIFSSLEKYDGKTNRQLTHAEIKQIAGRAGRFKGKYEIGTV
AGREGGDVRIISRALKAEHDVIESAGLKPSKEQLLMFAKANGLKIRETEE
DYAMAWEEKRQGGEGRREEERGGGTPSSYTEFTVLLKLFVHAASTLGSRA
QDLYFLCDLTDMLGVARLIEEIPLNFKDRFTFCIAPVDTKQAELMSYLRF
FRPAVPTQKRS*

mRNA from alignment at scaffold_16:441322..443118+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7169 ID=mRNA_7169|Name=jgi.p|Nanoce1779_2|623645|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_16:441322..443118+ (Nannochloropsis oceanica)
ATGTCTGACCCTTACGCTGATTTTGGTGCCCCACACGATTGGTACTCTCA
AGCCCGAAAGCTCAAGCGGAGCTTGATTTTGCACGTCGGGCCGACCAACG
CAGGCAAGACGCACGAGGCACTCGAACGGTTGCAGGCTGCGGCAAGTGGC
ATCTATTGCGGTCCCTTGCGGTTGCTCGCGTGGGAGGTGTATGAGAAGTT
AAATATGAATGGTGTGCTCTGCGAGCTGTGGACGGGACAGGAAGTGAAGG
AGATTGAAGGGAGTCGGCACGTGAGCTGCACAGTCGAGATGGCAGACATA
ACAAGGGTGTATGACGTGGCTGTGGTGGATGAGTGCCAGTTATTGGGAGA
CAAAGAGGTACGTCCAAATTTTCTCTAGCGGTGATTGTTGCTCCTCTGTG
CGTACATGCAGTTGTCATTTTTATTTTGTTAATCCCTCCCTCCACCCCTC
CCTCCTCTCTCCGTCCCTACAGAGAGGCTGGGCCTGGACAAGGGCCATCT
TAGGCTTACCTGCCGTGGAGCTGCACTTGTGTGGCTCACCTGCCTTTGTT
GAGATTGTGCACGAGCTTGCGAATGAATTGGGAGATATTGTGGAAGTCCG
CAAATATGAACGCTTAAGCCCTCTGCAACCACAAAGAGAAGCTGTGGGGA
GTTGGGCAGAGATAAGGCCTGGTGACTGCGTGGTGGCGTTTAGTCGGAAG
AGGCTCTTTCAGCTGAAGAATGAGATTGAGGTTGCGACATTTCCGAGGAT
GAAGTGTTGCATTGTGTATGGGGGATTGCCCCCGGAGGCCAGGAGGGAGC
AGGCACGGCTTTTCAATGAGGAGGGGAGTGGGTGGAATGTGCTGGTGGCG
AGTGATGCGATCGGTGAGCGAGAAGCACGGAGGGAGGAAGGGAGGAGGGA
TTGAGGGTTTGTCAGTTCTTTTTCGATATAAATATATGTCGTTATTACGG
CCATTTGATCGCCTCTTTGCGAGATATATCTTTCTCCATTATTTAATCTC
TTTCCTCTGCTCTCTTTCCCTCTTTCAATCACCCTCCTCCTCCTAGGCAT
GGGCCTTAATCTTTCCATCGGCCGAATTATCTTCTCCTCTCTTGAAAAGT
ATGACGGCAAAACCAATCGTCAATTGACCCATGCAGAGATCAAGCAAATC
GCTGGGAGGGCCGGCCGATTTAAGGGAAAGTACGAGGTATGTCACACCAA
AAATAATGAAATTAAGTCGAAAGAGAAAGGATTAGTTGCGGATACATATT
TTCCCTCAATCCCTTTCCCTTGTTTCTTTATTCCTCCCCCCGTCATCAGA
TAGGAACAGTTGCAGGCCGGGAAGGCGGAGACGTCCGCATCATCTCCCGC
GCATTGAAAGCGGAGCACGACGTGATCGAGTCGGCGGGCCTAAAGCCCTC
CAAAGAACAGTTGCTGATGTTCGCCAAAGCCAATGGATTGAAGATAAGAG
AGACCGAAGAAGATTATGCGATGGCTTGGGAAGAGAAACGGCAAGGCGGT
GAAGGAAGGAGGGAGGAAGAAAGAGGAGGAGGAACCCCGAGTAGCTACAC
AGAATTCACTGTCTTGCTCAAATTATTTGTCCACGCCGCGTCTACCCTCG
GCTCCCGGGCCCAGGACCTTTATTTCCTGTGTGACCTTACTGACATGCTC
GGGGTTGCGAGACTCATCGAAGAAATACCCCTGAATTTCAAAGACCGCTT
CACCTTCTGTATCGCCCCTGTGGACACCAAGCAAGCCGAGCTTATGTCTT
ACCTTCGTTTTTTTCGCCCGGCAGTACCAACACAAAAAAGAAGTTAA

Coding sequence (CDS) from alignment at scaffold_16:441322..443118+

>mRNA_7169 ID=mRNA_7169|Name=jgi.p|Nanoce1779_2|623645|organism=Nannochloropsis oceanica|type=CDS|length=5544bp|location=Sequence derived from alignment at scaffold_16:441322..443118+ (Nannochloropsis oceanica)
ATGTCTGACCCTTACGCTGATTTTGGTGCCCCACACGATTGGTACTCTCA
AGCCCGAAAGCTCAAGCGGAGCTTGATTTTGCACGTCGGGCCGACCAACG
CAGGCAAGACGCACGAGGCACTCGAACGGTTGCAGGCTGCGGCAAGTGGC
ATCTATTGCGGTCCCTTGCGGTTGCTCGCGTGGGAGGTGTATGAGAAGTT
AAATATGAATGGTGTGCTCTGCGAGCTGTGGACGGGACAGGAAGTGAAGG
AGATTGAAGGGAGTCGGCACGTGAGCTGCACAGTCGAGATGGCAGACATA
ACAAGGGTGTATGACGTGGCTGTGGTGGATGAGTGCCAGTTATTGGGAGA
CAAAGAGAGAGGCTGGGCCTGGACAAGGGCCATCTTAGGCTTACCTGCCG
TGGAGCTGCACTTGTGTGGCTCACCTGCCTTTGTTGAGATTGTGCACGAG
CTTGCGAATGAATTGGGAGATATTGTGGAAGTCCGCAAATATGAACGCTT
AAGCCCTCTGCAACCACAAAGAGAAGCTGTGGGGAGTTGGGCAGAGATAA
GGCCTGGTGACTGCGTGGTGGCGTTTAGTCGGAAGAGGCTCTTTCAGCTG
AAGAATGAGATTGAGGTTGCGACATTTCCGAGGATGAAGTGTTGCATTGT
GTATGGGGGATTGCCCCCGGAGGCCAGGAGGGAGCAGGCACGGCTTTTCA
ATGAGGAGGGGAGTGGGTGGAATGTGCTGGTGGCGAGTGATGCGATCGGC
ATGGGCCTTAATCTTTCCATCGGCCGAATTATCTTCTCCTCTCTTGAAAA
GTATGACGGCAAAACCAATCGTCAATTGACCCATGCAGAGATCAAGCAAA
TCGCTGGGAGGGCCGGCCGATTTAAGGGAAAGTACGAGATAGGAACAGTT
GCAGGCCGGGAAGGCGGAGACGTCCGCATCATCTCCCGCGCATTGAAAGC
GGAGCACGACGTGATCGAGTCGGCGGGCCTAAAGCCCTCCAAAGAACAGT
TGCTGATGTTCGCCAAAGCCAATGGATTGAAGATAAGAGAGACCGAAGAA
GATTATGCGATGGCTTGGGAAGAGAAACGGCAAGGCGGTGAAGGAAGGAG
GGAGGAAGAAAGAGGAGGAGGAACCCCGAGTAGCTACACAGAATTCACTG
TCTTGCTCAAATTATTTGTCCACGCCGCGTCTACCCTCGGCTCCCGGGCC
CAGGACCTTTATTTCCTGTGTGACCTTACTGACATGCTCGGGGTTGCGAG
ACTCATCGAAGAAATACCCCTGAATTTCAAAGACCGCTTCACCTTCTGTA
TCGCCCCTGTGGACACCAAGCAAGCCGAGCTTATGTCTTACCTTCGTTTT
TTTCGCCCGGCAGTACCAACACAAAAAAGAAGTTAAATGTCTGACCCTTA
CGCTGATTTTGGTGCCCCACACGATTGGTACTCTCAAGCCCGAAAGCTCA
AGCGGAGCTTGATTTTGCACGTCGGGCCGACCAACGCAGGCAAGACGCAC
GAGGCACTCGAACGGTTGCAGGCTGCGGCAAGTGGCATCTATTGCGGTCC
CTTGCGGTTGCTCGCGTGGGAGGTGTATGAGAAGTTAAATATGAATGGTG
TGCTCTGCGAGCTGTGGACGGGACAGGAAGTGAAGGAGATTGAAGGGAGT
CGGCACGTGAGCTGCACAGTCGAGATGGCAGACATAACAAGGGTGTATGA
CGTGGCTGTGGTGGATGAGTGCCAGTTATTGGGAGACAAAGAGAGAGGCT
GGGCCTGGACAAGGGCCATCTTAGGCTTACCTGCCGTGGAGCTGCACTTG
TGTGGCTCACCTGCCTTTGTTGAGATTGTGCACGAGCTTGCGAATGAATT
GGGAGATATTGTGGAAGTCCGCAAATATGAACGCTTAAGCCCTCTGCAAC
CACAAAGAGAAGCTGTGGGGAGTTGGGCAGAGATAAGGCCTGGTGACTGC
GTGGTGGCGTTTAGTCGGAAGAGGCTCTTTCAGCTGAAGAATGAGATTGA
GGTTGCGACATTTCCGAGGATGAAGTGTTGCATTGTGTATGGGGGATTGC
CCCCGGAGGCCAGGAGGGAGCAGGCACGGCTTTTCAATGAGGAGGGGAGT
GGGTGGAATGTGCTGGTGGCGAGTGATGCGATCGGCATGGGCCTTAATCT
TTCCATCGGCCGAATTATCTTCTCCTCTCTTGAAAAGTATGACGGCAAAA
CCAATCGTCAATTGACCCATGCAGAGATCAAGCAAATCGCTGGGAGGGCC
GGCCGATTTAAGGGAAAGTACGAGATAGGAACAGTTGCAGGCCGGGAAGG
CGGAGACGTCCGCATCATCTCCCGCGCATTGAAAGCGGAGCACGACGTGA
TCGAGTCGGCGGGCCTAAAGCCCTCCAAAGAACAGTTGCTGATGTTCGCC
AAAGCCAATGGATTGAAGATAAGAGAGACCGAAGAAGATTATGCGATGGC
TTGGGAAGAGAAACGGCAAGGCGGTGAAGGAAGGAGGGAGGAAGAAAGAG
GAGGAGGAACCCCGAGTAGCTACACAGAATTCACTGTCTTGCTCAAATTA
TTTGTCCACGCCGCGTCTACCCTCGGCTCCCGGGCCCAGGACCTTTATTT
CCTGTGTGACCTTACTGACATGCTCGGGGTTGCGAGACTCATCGAAGAAA
TACCCCTGAATTTCAAAGACCGCTTCACCTTCTGTATCGCCCCTGTGGAC
ACCAAGCAAGCCGAGCTTATGTCTTACCTTCGTTTTTTTCGCCCGGCAGT
ACCAACACAAAAAAGAAGTTAAATGTCTGACCCTTACGCTGATTTTGGTG
CCCCACACGATTGGTACTCTCAAGCCCGAAAGCTCAAGCGGAGCTTGATT
TTGCACGTCGGGCCGACCAACGCAGGCAAGACGCACGAGGCACTCGAACG
GTTGCAGGCTGCGGCAAGTGGCATCTATTGCGGTCCCTTGCGGTTGCTCG
CGTGGGAGGTGTATGAGAAGTTAAATATGAATGGTGTGCTCTGCGAGCTG
TGGACGGGACAGGAAGTGAAGGAGATTGAAGGGAGTCGGCACGTGAGCTG
CACAGTCGAGATGGCAGACATAACAAGGGTGTATGACGTGGCTGTGGTGG
ATGAGTGCCAGTTATTGGGAGACAAAGAGAGAGGCTGGGCCTGGACAAGG
GCCATCTTAGGCTTACCTGCCGTGGAGCTGCACTTGTGTGGCTCACCTGC
CTTTGTTGAGATTGTGCACGAGCTTGCGAATGAATTGGGAGATATTGTGG
AAGTCCGCAAATATGAACGCTTAAGCCCTCTGCAACCACAAAGAGAAGCT
GTGGGGAGTTGGGCAGAGATAAGGCCTGGTGACTGCGTGGTGGCGTTTAG
TCGGAAGAGGCTCTTTCAGCTGAAGAATGAGATTGAGGTTGCGACATTTC
CGAGGATGAAGTGTTGCATTGTGTATGGGGGATTGCCCCCGGAGGCCAGG
AGGGAGCAGGCACGGCTTTTCAATGAGGAGGGGAGTGGGTGGAATGTGCT
GGTGGCGAGTGATGCGATCGGCATGGGCCTTAATCTTTCCATCGGCCGAA
TTATCTTCTCCTCTCTTGAAAAGTATGACGGCAAAACCAATCGTCAATTG
ACCCATGCAGAGATCAAGCAAATCGCTGGGAGGGCCGGCCGATTTAAGGG
AAAGTACGAGATAGGAACAGTTGCAGGCCGGGAAGGCGGAGACGTCCGCA
TCATCTCCCGCGCATTGAAAGCGGAGCACGACGTGATCGAGTCGGCGGGC
CTAAAGCCCTCCAAAGAACAGTTGCTGATGTTCGCCAAAGCCAATGGATT
GAAGATAAGAGAGACCGAAGAAGATTATGCGATGGCTTGGGAAGAGAAAC
GGCAAGGCGGTGAAGGAAGGAGGGAGGAAGAAAGAGGAGGAGGAACCCCG
AGTAGCTACACAGAATTCACTGTCTTGCTCAAATTATTTGTCCACGCCGC
GTCTACCCTCGGCTCCCGGGCCCAGGACCTTTATTTCCTGTGTGACCTTA
CTGACATGCTCGGGGTTGCGAGACTCATCGAAGAAATACCCCTGAATTTC
AAAGACCGCTTCACCTTCTGTATCGCCCCTGTGGACACCAAGCAAGCCGA
GCTTATGTCTTACCTTCGTTTTTTTCGCCCGGCAGTACCAACACAAAAAA
GAAGTTAAATGTCTGACCCTTACGCTGATTTTGGTGCCCCACACGATTGG
TACTCTCAAGCCCGAAAGCTCAAGCGGAGCTTGATTTTGCACGTCGGGCC
GACCAACGCAGGCAAGACGCACGAGGCACTCGAACGGTTGCAGGCTGCGG
CAAGTGGCATCTATTGCGGTCCCTTGCGGTTGCTCGCGTGGGAGGTGTAT
GAGAAGTTAAATATGAATGGTGTGCTCTGCGAGCTGTGGACGGGACAGGA
AGTGAAGGAGATTGAAGGGAGTCGGCACGTGAGCTGCACAGTCGAGATGG
CAGACATAACAAGGGTGTATGACGTGGCTGTGGTGGATGAGTGCCAGTTA
TTGGGAGACAAAGAGAGAGGCTGGGCCTGGACAAGGGCCATCTTAGGCTT
ACCTGCCGTGGAGCTGCACTTGTGTGGCTCACCTGCCTTTGTTGAGATTG
TGCACGAGCTTGCGAATGAATTGGGAGATATTGTGGAAGTCCGCAAATAT
GAACGCTTAAGCCCTCTGCAACCACAAAGAGAAGCTGTGGGGAGTTGGGC
AGAGATAAGGCCTGGTGACTGCGTGGTGGCGTTTAGTCGGAAGAGGCTCT
TTCAGCTGAAGAATGAGATTGAGGTTGCGACATTTCCGAGGATGAAGTGT
TGCATTGTGTATGGGGGATTGCCCCCGGAGGCCAGGAGGGAGCAGGCACG
GCTTTTCAATGAGGAGGGGAGTGGGTGGAATGTGCTGGTGGCGAGTGATG
CGATCGGCATGGGCCTTAATCTTTCCATCGGCCGAATTATCTTCTCCTCT
CTTGAAAAGTATGACGGCAAAACCAATCGTCAATTGACCCATGCAGAGAT
CAAGCAAATCGCTGGGAGGGCCGGCCGATTTAAGGGAAAGTACGAGATAG
GAACAGTTGCAGGCCGGGAAGGCGGAGACGTCCGCATCATCTCCCGCGCA
TTGAAAGCGGAGCACGACGTGATCGAGTCGGCGGGCCTAAAGCCCTCCAA
AGAACAGTTGCTGATGTTCGCCAAAGCCAATGGATTGAAGATAAGAGAGA
CCGAAGAAGATTATGCGATGGCTTGGGAAGAGAAACGGCAAGGCGGTGAA
GGAAGGAGGGAGGAAGAAAGAGGAGGAGGAACCCCGAGTAGCTACACAGA
ATTCACTGTCTTGCTCAAATTATTTGTCCACGCCGCGTCTACCCTCGGCT
CCCGGGCCCAGGACCTTTATTTCCTGTGTGACCTTACTGACATGCTCGGG
GTTGCGAGACTCATCGAAGAAATACCCCTGAATTTCAAAGACCGCTTCAC
CTTCTGTATCGCCCCTGTGGACACCAAGCAAGCCGAGCTTATGTCTTACC
TTCGTTTTTTTCGCCCGGCAGTACCAACACAAAAAAGAAGTTAA

Synonyms

Publications