jgi.p|Nanoce1779_2|595846, mRNA_7167 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595846
Unique NamemRNA_7167
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length558
Alignment locationscaffold_16:436233..436790 -

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Properties
Property NameValue
TranscriptId595932
TrackFilteredModels2
ProteinId595846
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:436233..436790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595846gene_7167Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595846mRNA_7167-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7167CDS_7167Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7167 ID=mRNA_7167|Name=jgi.p|Nanoce1779_2|595846|organism=Nannochloropsis oceanica|type=mRNA|length=558bp
GGTGTCAATTACGATGGCCTCCGGTACGTTTTCTTGTGTGTCCTTGGTCG
AGCGAGCGAAGCGTGATGTGGAATAGGGCCTATGCTGCCGAGCTTCCATG
CGCCTGTGCCCGCGTTTTAGATCCCCCAGGCACAAGTTTATTCTGAATTT
CGTATTTCTTCACCACCTTAAGTTCACATACACTCATTCATGCAATTCAA
CCTCATGTAATCGCACGAAATCCATCCATTTACAGCAAAATGCTGAAGAA
TATTGGCGAGGAGAAGCCCGAGCGCCTCTCAAAGTCGCAAGTCACCCGCA
CTGTCGAGGTACGTCTATTACCATGTTTGTGAGTACGTAAATTTGAATTC
ATTTAAGTTTTCCCTTTCAAAATATAGAAGTCTTATACTTTTGTGCATGA
AATCTCCCTTCGGCACACTCAAGGGAGAGACAGCCTTCTCACCTCTTGGC
TCCTTCCAACCCTTCCCAACTCCTATATAGCGTTACTTCAAATCTGGAAC
TTTTACCCTCAATTCGATAAGAAGAGCAGTTGGGGTCCCTCGACAGGACG
ACGAGGAC
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protein sequence of jgi.p|Nanoce1779_2|595846

>mRNA_7167-protein ID=mRNA_7167-protein|Name=jgi.p|Nanoce1779_2|595846|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MRLCPRFRSPRHKFILNFVFLHHLKFTYTHSCNSTSCNRTKSIHLQQNAE
EYWRGEARAPLKVASHPHCRGTSITMFVST*
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mRNA from alignment at scaffold_16:436233..436790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7167 ID=mRNA_7167|Name=jgi.p|Nanoce1779_2|595846|organism=Nannochloropsis oceanica|type=mRNA|length=558bp|location=Sequence derived from alignment at scaffold_16:436233..436790- (Nannochloropsis oceanica)
GGTGTCAATTACGATGGCCTCCGGTACGTTTTCTTGTGTGTCCTTGGTCG
AGCGAGCGAAGCGTGATGTGGAATAGGGCCTATGCTGCCGAGCTTCCATG
CGCCTGTGCCCGCGTTTTAGATCCCCCAGGCACAAGTTTATTCTGAATTT
CGTATTTCTTCACCACCTTAAGTTCACATACACTCATTCATGCAATTCAA
CCTCATGTAATCGCACGAAATCCATCCATTTACAGCAAAATGCTGAAGAA
TATTGGCGAGGAGAAGCCCGAGCGCCTCTCAAAGTCGCAAGTCACCCGCA
CTGTCGAGGTACGTCTATTACCATGTTTGTGAGTACGTAAATTTGAATTC
ATTTAAGTTTTCCCTTTCAAAATATAGAAGTCTTATACTTTTGTGCATGA
AATCTCCCTTCGGCACACTCAAGGGAGAGACAGCCTTCTCACCTCTTGGC
TCCTTCCAACCCTTCCCAACTCCTATATAGCGTTACTTCAAATCTGGAAC
TTTTACCCTCAATTCGATAAGAAGAGCAGTTGGGGTCCCTCGACAGGACG
ACGAGGAC
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Coding sequence (CDS) from alignment at scaffold_16:436233..436790-

>mRNA_7167 ID=mRNA_7167|Name=jgi.p|Nanoce1779_2|595846|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_16:436233..436790- (Nannochloropsis oceanica)
ATGCGCCTGTGCCCGCGTTTTAGATCCCCCAGGCACAAGTTTATTCTGAA
TTTCGTATTTCTTCACCACCTTAAGTTCACATACACTCATTCATGCAATT
CAACCTCATGTAATCGCACGAAATCCATCCATTTACAGCAAAATGCTGAA
GAATATTGGCGAGGAGAAGCCCGAGCGCCTCTCAAAGTCGCAAGTCACCC
GCACTGTCGAGGTACGTCTATTACCATGTTTGTGAGTACGTAA
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Synonyms
Publications