jgi.p|Nanoce1779_2|595838, mRNA_7164 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595838
Unique NamemRNA_7164
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length629
Alignment locationscaffold_16:430574..431202 +

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Properties
Property NameValue
TranscriptId595924
TrackFilteredModels2
ProteinId595838
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:430574..431202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595838gene_7164Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595838mRNA_7164-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7164CDS_7164Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7164 ID=mRNA_7164|Name=jgi.p|Nanoce1779_2|595838|organism=Nannochloropsis oceanica|type=mRNA|length=629bp
GGAGAAGGAGCAGGAGGAGGAGCAGGAGGAGGAGCAGGAGGAGGAGGAGG
GGGGGGAATACCAGGCGGCATGGGATGCTTATTACGCCGCCCAAGCGCAA
CAACAACCACAGCAACAACAGCAACAATACTATCCTCCCATCCAGCACCA
ACAGCATGAAGAACAAGACGAGCTTGATGAGTTCGGACAACCCCTCACCG
GGGCTGAATCCCGCCGGCAAAAGCAACGGCAGAAGAGAGAGCTCGCAGCA
GGGAACCTCTCCGCCGTCAGTCAGCTAGCAGGAGGGCAAGTTATGGAGGT
GGCGGCCAGAGACGAGGCCTGGGATCCATTTCGACATGGCCCGCCCAAGA
AGAAGGAGAAGGTGTCTATTGCCGCCATGTTTTACGACACCAAGACAGGG
GAAACCATCACCACCACGGAAGCAAGCAAGACCCACAAGCGGAAGCATCA
GATCAATAGCCTTGCCATTCAGGCCGCAGAACGAGAAGCGGATTTGCTGG
AGGGGAAGGCGAGAGGCATGCAGAGCAAGGCGCAGACGCAGGGGAAGTAC
GGCTGGTAAGGGTGAAATGGCGTGGTTGCGGAGATCAACCAAATCATCGT
GTGAAAACAAAAATACGACGAAACCGAGT
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protein sequence of jgi.p|Nanoce1779_2|595838

>mRNA_7164-protein ID=mRNA_7164-protein|Name=jgi.p|Nanoce1779_2|595838|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MEVAARDEAWDPFRHGPPKKKEKVSIAAMFYDTKTGETITTTEASKTHKR
KHQINSLAIQAAEREADLLEGKARGMQSKAQTQGKYGW*
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mRNA from alignment at scaffold_16:430574..431202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7164 ID=mRNA_7164|Name=jgi.p|Nanoce1779_2|595838|organism=Nannochloropsis oceanica|type=mRNA|length=629bp|location=Sequence derived from alignment at scaffold_16:430574..431202+ (Nannochloropsis oceanica)
GGAGAAGGAGCAGGAGGAGGAGCAGGAGGAGGAGCAGGAGGAGGAGGAGG
GGGGGGAATACCAGGCGGCATGGGATGCTTATTACGCCGCCCAAGCGCAA
CAACAACCACAGCAACAACAGCAACAATACTATCCTCCCATCCAGCACCA
ACAGCATGAAGAACAAGACGAGCTTGATGAGTTCGGACAACCCCTCACCG
GGGCTGAATCCCGCCGGCAAAAGCAACGGCAGAAGAGAGAGCTCGCAGCA
GGGAACCTCTCCGCCGTCAGTCAGCTAGCAGGAGGGCAAGTTATGGAGGT
GGCGGCCAGAGACGAGGCCTGGGATCCATTTCGACATGGCCCGCCCAAGA
AGAAGGAGAAGGTGTCTATTGCCGCCATGTTTTACGACACCAAGACAGGG
GAAACCATCACCACCACGGAAGCAAGCAAGACCCACAAGCGGAAGCATCA
GATCAATAGCCTTGCCATTCAGGCCGCAGAACGAGAAGCGGATTTGCTGG
AGGGGAAGGCGAGAGGCATGCAGAGCAAGGCGCAGACGCAGGGGAAGTAC
GGCTGGTAAGGGTGAAATGGCGTGGTTGCGGAGATCAACCAAATCATCGT
GTGAAAACAAAAATACGACGAAACCGAGT
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Coding sequence (CDS) from alignment at scaffold_16:430574..431202+

>mRNA_7164 ID=mRNA_7164|Name=jgi.p|Nanoce1779_2|595838|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_16:430574..431202+ (Nannochloropsis oceanica)
ATGGAGGTGGCGGCCAGAGACGAGGCCTGGGATCCATTTCGACATGGCCC
GCCCAAGAAGAAGGAGAAGGTGTCTATTGCCGCCATGTTTTACGACACCA
AGACAGGGGAAACCATCACCACCACGGAAGCAAGCAAGACCCACAAGCGG
AAGCATCAGATCAATAGCCTTGCCATTCAGGCCGCAGAACGAGAAGCGGA
TTTGCTGGAGGGGAAGGCGAGAGGCATGCAGAGCAAGGCGCAGACGCAGG
GGAAGTACGGCTGGTAA
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Synonyms
Publications