jgi.p|Nanoce1779_2|595835, mRNA_7163 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595835
Unique NamemRNA_7163
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length821
Alignment locationscaffold_16:429395..430215 +

Link to JBrowse

Properties
Property NameValue
TranscriptId595921
TrackFilteredModels2
ProteinId595835
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:429395..430215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595835gene_7163Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595835mRNA_7163-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7163CDS_7163Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7163 ID=mRNA_7163|Name=jgi.p|Nanoce1779_2|595835|organism=Nannochloropsis oceanica|type=mRNA|length=821bp
ACAGGTAGGCAGTAACTATGTCCTTGCTGGGTGTGGACTATGGCAGCGAC
TCGGACGCGGAGGGCAACCAGCAGCAACAGCAGTCTTCCGCCCCTCCTCC
CCCGCCCTTCTCCTCGGCCTCCTCCCATGCTCTCCTTCCCGAGACCGCCA
CCGATGGCAAGAAACACAAGAAGAAGGACAAAAAGCCTAAGAAGAAAAAG
GCTAAGGTCGCACTTTCCATTTTGCCGGCGCATATACAAGCAGCATTGAT
GCGGGCGGTGCCTTTGCGAAGGGCCAGGGATAGCAGCAAGGGGGTCACGG
GGGGGAGGTTTTTAAGTGATGACGACGGAGACGAGGACGAGGACGACGAC
GATCTAGATGGGGCTGGGGAGGAGGAAGAGCTGGATGATGAGGTGCGTGA
ACGGCAGCCGTGGTGTAGTGAGAACATGGATCTCTTGGCTCTCCCTTTTT
TGACCTCTCGACTTCTTGTCAACCCCTTCCAACACTCTCACGAGCCCCTT
CTCCTTCCAAACTCAGGAGCGAGAACGCCGCCGCAAGATCCGAGCTCAAG
TCGCCGAGAGCAAAGCCATCGTTTCTCGTCAAGCCGCTGGTGCGACGGGC
TTGTTCGCCCTCCTGCCCAAACCCAAAGCCGAAGAAGCTCTAGATCTGGC
TCTCGTCAAAAGCAACAAAGCCGCTGCCGAAAGGAAGAAGGTAAAAGATA
TAAAAGTAGCAGCAGCAGCAGCAGCAGCAGTGGAGGCAGCAGCAGTGGCA
GCTGAGAGTGAAGACAGTGGGGAGGACGAGGATGAGGACGAGGACGAAGG
AAGGGGAGAAAATGGGTCTGG
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protein sequence of jgi.p|Nanoce1779_2|595835

>mRNA_7163-protein ID=mRNA_7163-protein|Name=jgi.p|Nanoce1779_2|595835|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MSLLGVDYGSDSDAEGNQQQQQSSAPPPPPFSSASSHALLPETATDGKKH
KKKDKKPKKKKAKVALSILPAHIQAALMRAVPLRRARDSSKGVTGGRFLS
DDDGDEDEDDDDLDGAGEEEELDDEVRERQPWCSENMDLLALPFLTSRLL
VNPFQHSHEPLLLPNSGARTPPQDPSSSRREQSHRFSSSRWCDGLVRPPA
QTQSRRSSRSGSRQKQQSRCRKEEGKRYKSSSSSSSSSGGSSSGS*
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mRNA from alignment at scaffold_16:429395..430215+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7163 ID=mRNA_7163|Name=jgi.p|Nanoce1779_2|595835|organism=Nannochloropsis oceanica|type=mRNA|length=821bp|location=Sequence derived from alignment at scaffold_16:429395..430215+ (Nannochloropsis oceanica)
ACAGGTAGGCAGTAACTATGTCCTTGCTGGGTGTGGACTATGGCAGCGAC
TCGGACGCGGAGGGCAACCAGCAGCAACAGCAGTCTTCCGCCCCTCCTCC
CCCGCCCTTCTCCTCGGCCTCCTCCCATGCTCTCCTTCCCGAGACCGCCA
CCGATGGCAAGAAACACAAGAAGAAGGACAAAAAGCCTAAGAAGAAAAAG
GCTAAGGTCGCACTTTCCATTTTGCCGGCGCATATACAAGCAGCATTGAT
GCGGGCGGTGCCTTTGCGAAGGGCCAGGGATAGCAGCAAGGGGGTCACGG
GGGGGAGGTTTTTAAGTGATGACGACGGAGACGAGGACGAGGACGACGAC
GATCTAGATGGGGCTGGGGAGGAGGAAGAGCTGGATGATGAGGTGCGTGA
ACGGCAGCCGTGGTGTAGTGAGAACATGGATCTCTTGGCTCTCCCTTTTT
TGACCTCTCGACTTCTTGTCAACCCCTTCCAACACTCTCACGAGCCCCTT
CTCCTTCCAAACTCAGGAGCGAGAACGCCGCCGCAAGATCCGAGCTCAAG
TCGCCGAGAGCAAAGCCATCGTTTCTCGTCAAGCCGCTGGTGCGACGGGC
TTGTTCGCCCTCCTGCCCAAACCCAAAGCCGAAGAAGCTCTAGATCTGGC
TCTCGTCAAAAGCAACAAAGCCGCTGCCGAAAGGAAGAAGGTAAAAGATA
TAAAAGTAGCAGCAGCAGCAGCAGCAGCAGTGGAGGCAGCAGCAGTGGCA
GCTGAGAGTGAAGACAGTGGGGAGGACGAGGATGAGGACGAGGACGAAGG
AAGGGGAGAAAATGGGTCTGG
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Coding sequence (CDS) from alignment at scaffold_16:429395..430215+

>mRNA_7163 ID=mRNA_7163|Name=jgi.p|Nanoce1779_2|595835|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_16:429395..430215+ (Nannochloropsis oceanica)
ATGTCCTTGCTGGGTGTGGACTATGGCAGCGACTCGGACGCGGAGGGCAA
CCAGCAGCAACAGCAGTCTTCCGCCCCTCCTCCCCCGCCCTTCTCCTCGG
CCTCCTCCCATGCTCTCCTTCCCGAGACCGCCACCGATGGCAAGAAACAC
AAGAAGAAGGACAAAAAGCCTAAGAAGAAAAAGGCTAAGGTCGCACTTTC
CATTTTGCCGGCGCATATACAAGCAGCATTGATGCGGGCGGTGCCTTTGC
GAAGGGCCAGGGATAGCAGCAAGGGGGTCACGGGGGGGAGGTTTTTAAGT
GATGACGACGGAGACGAGGACGAGGACGACGACGATCTAGATGGGGCTGG
GGAGGAGGAAGAGCTGGATGATGAGGTGCGTGAACGGCAGCCGTGGTGTA
GTGAGAACATGGATCTCTTGGCTCTCCCTTTTTTGACCTCTCGACTTCTT
GTCAACCCCTTCCAACACTCTCACGAGCCCCTTCTCCTTCCAAACTCAGG
AGCGAGAACGCCGCCGCAAGATCCGAGCTCAAGTCGCCGAGAGCAAAGCC
ATCGTTTCTCGTCAAGCCGCTGGTGCGACGGGCTTGTTCGCCCTCCTGCC
CAAACCCAAAGCCGAAGAAGCTCTAGATCTGGCTCTCGTCAAAAGCAACA
AAGCCGCTGCCGAAAGGAAGAAGGTAAAAGATATAAAAGTAGCAGCAGCA
GCAGCAGCAGCAGTGGAGGCAGCAGCAGTGGCAGCTGA
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Synonyms
Publications