jgi.p|Nanoce1779_2|650516, mRNA_7162 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|650516
Unique NamemRNA_7162
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length780
Alignment locationscaffold_16:428073..429002 -

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Properties
Property NameValue
TranscriptId650602
TrackFilteredModels2
ProteinId650516
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:428073..429002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650516gene_7162Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650516mRNA_7162-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7162CDS_7162Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7162 ID=mRNA_7162|Name=jgi.p|Nanoce1779_2|650516|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
ATGGATCCATCCGGGTCCTCCCGTGCAAAGCAGCGCAACCTCAAGAATCC
ATTGCTCCTCGACGAAAAGCTGTCGTACGTCGTGCCGCCCTCAGCGCCAC
CGGCCCCGTTTTACGATGCCGATCATCACCACTACCAGTACCCTCCAGTC
CCTTTGGCCGACGGGGAGCCCATCCTCGCCACTGTCCTTGCTCCCAGCAA
CAGGACCAACACGACTGACCGCACAAACTGGACGGCTGTGACCGATCCAG
GGGTGCAAGCGGAGATTACGCGTTCACTTTCACTGGACCCAAGGCCACAA
GAGATTCCCTCCTCAGGCGTGAGCGGGATGATTAGTAGATGCGACGAGGG
ACCTCCTTCTTCCTCTTCCTCTGCCGGCAGTACGTTTGTGCATAGCGCTG
ACAGGTTGGCGGCCTTGCGAAGTGTAGAGGAGCGCTTGCGGGTGCGCGAG
GCGGAAAGGCAGGGGTGCCGACGTAATGCGTTGGATCATGCTTCGTTACG
AGCTGCGGAAGCAGCAGCAGCTGCACGCCGACGAGGAGGTGGAGGAGGGA
AAGGCAGAGGACGAGGAGGGATTGACGAGGATGGGTTGCAGGTTGATCCG
TCTCTGCAAGATGGTGTGCCTTCGCTCTCGGAGATCCTGGCGTCTCGACA
GAAGAAAAAGGAGGGGGAGGGAGGGAGGGAGGGAGGGCAGAAGCACAAGC
CCGGGGATTACCAGGTGGCCGAGTACAAGATTGAAGAGGGGTACCAGATA
AGTGAGTACAGGAGCATATACGACTCATGA
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protein sequence of jgi.p|Nanoce1779_2|650516

>mRNA_7162-protein ID=mRNA_7162-protein|Name=jgi.p|Nanoce1779_2|650516|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MDPSGSSRAKQRNLKNPLLLDEKLSYVVPPSAPPAPFYDADHHHYQYPPV
PLADGEPILATVLAPSNRTNTTDRTNWTAVTDPGVQAEITRSLSLDPRPQ
EIPSSGVSGMISRCDEGPPSSSSSAGSTFVHSADRLAALRSVEERLRVRE
AERQGCRRNALDHASLRAAEAAAAARRRGGGGGKGRGRGGIDEDGLQVDP
SLQDGVPSLSEILASRQKKKEGEGGREGGQKHKPGDYQVAEYKIEEGYQI
SEYRSIYDS*
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mRNA from alignment at scaffold_16:428073..429002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7162 ID=mRNA_7162|Name=jgi.p|Nanoce1779_2|650516|organism=Nannochloropsis oceanica|type=mRNA|length=930bp|location=Sequence derived from alignment at scaffold_16:428073..429002- (Nannochloropsis oceanica)
ATGGATCCATCCGGGTCCTCCCGTGCAAAGGTAAGACATTGTCTTCCCCT
CGACATTGTCTTCCCCTCCCCTCTCTCCATTCCACCTTCATCCCTCATCT
TTCCGCCTCTGTTTTATTCTGGCAAGCGATCTCACCTACACACCGTCACC
ACACCAACACACCAACACACCAACCTACAGCAGCGCAACCTCAAGAATCC
ATTGCTCCTCGACGAAAAGCTGTCGTACGTCGTGCCGCCCTCAGCGCCAC
CGGCCCCGTTTTACGATGCCGATCATCACCACTACCAGTACCCTCCAGTC
CCTTTGGCCGACGGGGAGCCCATCCTCGCCACTGTCCTTGCTCCCAGCAA
CAGGACCAACACGACTGACCGCACAAACTGGACGGCTGTGACCGATCCAG
GGGTGCAAGCGGAGATTACGCGTTCACTTTCACTGGACCCAAGGCCACAA
GAGATTCCCTCCTCAGGCGTGAGCGGGATGATTAGTAGATGCGACGAGGG
ACCTCCTTCTTCCTCTTCCTCTGCCGGCAGTACGTTTGTGCATAGCGCTG
ACAGGTTGGCGGCCTTGCGAAGTGTAGAGGAGCGCTTGCGGGTGCGCGAG
GCGGAAAGGCAGGGGTGCCGACGTAATGCGTTGGATCATGCTTCGTTACG
AGCTGCGGAAGCAGCAGCAGCTGCACGCCGACGAGGAGGTGGAGGAGGGA
AAGGCAGAGGACGAGGAGGGATTGACGAGGATGGGTTGCAGGTTGATCCG
TCTCTGCAAGATGGTGTGCCTTCGCTCTCGGAGATCCTGGCGTCTCGACA
GAAGAAAAAGGAGGGGGAGGGAGGGAGGGAGGGAGGGCAGAAGCACAAGC
CCGGGGATTACCAGGTGGCCGAGTACAAGATTGAAGAGGGGTACCAGATA
AGTGAGTACAGGAGCATATACGACTCATGA
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Coding sequence (CDS) from alignment at scaffold_16:428073..429002-

>mRNA_7162 ID=mRNA_7162|Name=jgi.p|Nanoce1779_2|650516|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_16:428073..429002- (Nannochloropsis oceanica)
CAGCGCAACCTCAAGAATCCATTGCTCCTCGACGAAAAGCTGTCGTACGT
CGTGCCGCCCTCAGCGCCACCGGCCCCGTTTTACGATGCCGATCATCACC
ACTACCAGTACCCTCCAGTCCCTTTGGCCGACGGGGAGCCCATCCTCGCC
ACTGTCCTTGCTCCCAGCAACAGGACCAACACGACTGACCGCACAAACTG
GACGGCTGTGACCGATCCAGGGGTGCAAGCGGAGATTACGCGTTCACTTT
CACTGGACCCAAGGCCACAAGAGATTCCCTCCTCAGGCGTGAGCGGGATG
ATTAGTAGATGCGACGAGGGACCTCCTTCTTCCTCTTCCTCTGCCGGCAG
TACGTTTGTGCATAGCGCTGACAGGTTGGCGGCCTTGCGAAGTGTAGAGG
AGCGCTTGCGGGTGCGCGAGGCGGAAAGGCAGGGGTGCCGACGTAATGCG
TTGGATCATGCTTCGTTACGAGCTGCGGAAGCAGCAGCAGCTGCACGCCG
ACGAGGAGGTGGAGGAGGGAAAGGCAGAGGACGAGGAGGGATTGACGAGG
ATGGGTTGCAGGTTGATCCGTCTCTGCAAGATGGTGTGCCTTCGCTCTCG
GAGATCCTGGCGTCTCGACAGAAGAAAAAGGAGGGGGAGGGAGGGAGGGA
GGGAGGGCAGAAGCACAAGCCCGGGGATTACCAGGTGGCCGAGTACAAGA
TTGAAGAGGGGTACCAGATAAGTGAGTACAGGAGCATATACGACTCATGA
ATGGATCCATCCGGGTCCTCCCGTGCAAAGCAGCGCAACCTCAAGAATCC
ATTGCTCCTCGACGAAAAGCTGTCGTACGTCGTGCCGCCCTCAGCGCCAC
CGGCCCCGTTTTACGATGCCGATCATCACCACTACCAGTACCCTCCAGTC
CCTTTGGCCGACGGGGAGCCCATCCTCGCCACTGTCCTTGCTCCCAGCAA
CAGGACCAACACGACTGACCGCACAAACTGGACGGCTGTGACCGATCCAG
GGGTGCAAGCGGAGATTACGCGTTCACTTTCACTGGACCCAAGGCCACAA
GAGATTCCCTCCTCAGGCGTGAGCGGGATGATTAGTAGATGCGACGAGGG
ACCTCCTTCTTCCTCTTCCTCTGCCGGCAGTACGTTTGTGCATAGCGCTG
ACAGGTTGGCGGCCTTGCGAAGTGTAGAGGAGCGCTTGCGGGTGCGCGAG
GCGGAAAGGCAGGGGTGCCGACGTAATGCGTTGGATCATGCTTCGTTACG
AGCTGCGGAAGCAGCAGCAGCTGCACGCCGACGAGGAGGTGGAGGAGGGA
AAGGCAGAGGACGAGGAGGGATTGACGAGGATGGGTTGCAGGTTGATCCG
TCTCTGCAAGATGGTGTGCCTTCGCTCTCGGAGATCCTGGCGTCTCGACA
GAAGAAAAAGGAGGGGGAGGGAGGGAGGGAGGGAGGGCAGAAGCACAAGC
CCGGGGATTACCAGGTGGCCGAGTACAAGATTGAAGAGGGGTACCAGATA
AGTGAGTACAGGAGCATATACGACTCATGAATGGATCCATCCGGGTCCTC
CCGTGCAAAG
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Synonyms
Publications