jgi.p|Nanoce1779_2|544251, mRNA_7160 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|544251
Unique NamemRNA_7160
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1160
Alignment locationscaffold_16:424047..425206 -

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Properties
Property NameValue
TranscriptId544337
TrackFilteredModels2
ProteinId544251
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:424047..425206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544251gene_7160Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7160CDS_7160Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544251mRNA_7160-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7160 ID=mRNA_7160|Name=jgi.p|Nanoce1779_2|544251|organism=Nannochloropsis oceanica|type=mRNA|length=1160bp
CGGTGAAGCGGGTGTATGCTATGCGTGGAGCGTTGTTGTTGTTGGATTAC
GAGGAGGAAGCGACGGGGCCATTTCGCCAGCTGTTGCTCCAGTGCTTTCT
CAAGCCCACCTACCTCCGTTCGGCCGACGGTCGTCGTCTTCTGACCTATC
TTTTCGGGCTGCATCCTGCGTTAGTAGCCGACATCCACGAGACGGTCAGG
AGCCAACTACCCTACGCAAAGAAGAAACTGGTGCAAGCCTACGGTGATGT
CTACTTCCGGGCCTGGAAAGCCGCCTCCTCTCCCTACCTCGAGGCCATCG
AAACCGGGTGCATCCAAGATTTCATGCACGCAGCCGTCCATTCCTCGAGC
CCCTCGCTCTACGTGACCCTCCGCCTCTTCCTCCAAGCCTTCCACACCAA
CAAGCGCCTCCGCGATGTGGACGCCATGCTCCTCCGTCTCTATAACCCCA
TCCTCTGGCGTTCCCTCCAAGTCGCCTCCCCCACGGTCCGCGCCCAAGCC
ACCGGGCTACTAGTCGATGCCTTCCCCCTCCAAAACCCCGACATGGGTAC
AATAGAAGCAGCGTCACTCTTGCAAAAGCAGCTGGACATGCTGCAAGCCC
TCCTCCTGGATCCGGAACCGCATGTGCGAGTCGCGGCGGTGGTGGGCGTG
TGTCGTGTGCTCAGTGTGTTTTGGGAGGCTATCCCCCTGCATGTGACCAA
GCAATACATCACCCGTCTCGTCGGCTCCCTCGCCTTTGATTCCTCCTCTG
CTTTGGTGCGCTTGGCCGTGGTGGAGGGGTTGACGGAGCTGCTAGAGCAG
CCCCTCGCGCACCCTGTCCTCAAGCAAGCCCTCCCCCTGACCGCCCCCCT
GCTGCAGGACAAGACCCCCCGAGTCCGTTTGGCCTTTGTGGGCCTCTTGC
AGAAGGTGAAGGCGGTGCGAGACATCAAGTTCTACCAGGTCGTCCCCGTG
GAGCACCTGCTGGCACGGTTCGCGGTGGATGCCCCCAAGGCGAGCAGCAA
AGCGCTCTCGGCTCGCATGGCTGATCTGTTGCTGAATTCCTATTTCCCCC
AGGTACCTCCATTTATCCATTCCTCTCTTCCTCCCTCCATTCCTCTCTCC
CTTCCTCTCTCCCTGCTTTCTCTTTCTCTTCCCCCTTTTCATCCGGCTCA
TCATTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|544251

>mRNA_7160-protein ID=mRNA_7160-protein|Name=jgi.p|Nanoce1779_2|544251|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MRGALLLLDYEEEATGPFRQLLLQCFLKPTYLRSADGRRLLTYLFGLHPA
LVADIHETVRSQLPYAKKKLVQAYGDVYFRAWKAASSPYLEAIETGCIQD
FMHAAVHSSSPSLYVTLRLFLQAFHTNKRLRDVDAMLLRLYNPILWRSLQ
VASPTVRAQATGLLVDAFPLQNPDMGTIEAASLLQKQLDMLQALLLDPEP
HVRVAAVVGVCRVLSVFWEAIPLHVTKQYITRLVGSLAFDSSSALVRLAV
VEGLTELLEQPLAHPVLKQALPLTAPLLQDKTPRVRLAFVGLLQKVKAVR
DIKFYQVVPVEHLLARFAVDAPKASSKALSARMADLLLNSYFPQVPPFIH
SSLPPSIPLSLPLSLLSLSLPPFHPAHHSS
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mRNA from alignment at scaffold_16:424047..425206-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7160 ID=mRNA_7160|Name=jgi.p|Nanoce1779_2|544251|organism=Nannochloropsis oceanica|type=mRNA|length=1160bp|location=Sequence derived from alignment at scaffold_16:424047..425206- (Nannochloropsis oceanica)
CGGTGAAGCGGGTGTATGCTATGCGTGGAGCGTTGTTGTTGTTGGATTAC
GAGGAGGAAGCGACGGGGCCATTTCGCCAGCTGTTGCTCCAGTGCTTTCT
CAAGCCCACCTACCTCCGTTCGGCCGACGGTCGTCGTCTTCTGACCTATC
TTTTCGGGCTGCATCCTGCGTTAGTAGCCGACATCCACGAGACGGTCAGG
AGCCAACTACCCTACGCAAAGAAGAAACTGGTGCAAGCCTACGGTGATGT
CTACTTCCGGGCCTGGAAAGCCGCCTCCTCTCCCTACCTCGAGGCCATCG
AAACCGGGTGCATCCAAGATTTCATGCACGCAGCCGTCCATTCCTCGAGC
CCCTCGCTCTACGTGACCCTCCGCCTCTTCCTCCAAGCCTTCCACACCAA
CAAGCGCCTCCGCGATGTGGACGCCATGCTCCTCCGTCTCTATAACCCCA
TCCTCTGGCGTTCCCTCCAAGTCGCCTCCCCCACGGTCCGCGCCCAAGCC
ACCGGGCTACTAGTCGATGCCTTCCCCCTCCAAAACCCCGACATGGGTAC
AATAGAAGCAGCGTCACTCTTGCAAAAGCAGCTGGACATGCTGCAAGCCC
TCCTCCTGGATCCGGAACCGCATGTGCGAGTCGCGGCGGTGGTGGGCGTG
TGTCGTGTGCTCAGTGTGTTTTGGGAGGCTATCCCCCTGCATGTGACCAA
GCAATACATCACCCGTCTCGTCGGCTCCCTCGCCTTTGATTCCTCCTCTG
CTTTGGTGCGCTTGGCCGTGGTGGAGGGGTTGACGGAGCTGCTAGAGCAG
CCCCTCGCGCACCCTGTCCTCAAGCAAGCCCTCCCCCTGACCGCCCCCCT
GCTGCAGGACAAGACCCCCCGAGTCCGTTTGGCCTTTGTGGGCCTCTTGC
AGAAGGTGAAGGCGGTGCGAGACATCAAGTTCTACCAGGTCGTCCCCGTG
GAGCACCTGCTGGCACGGTTCGCGGTGGATGCCCCCAAGGCGAGCAGCAA
AGCGCTCTCGGCTCGCATGGCTGATCTGTTGCTGAATTCCTATTTCCCCC
AGGTACCTCCATTTATCCATTCCTCTCTTCCTCCCTCCATTCCTCTCTCC
CTTCCTCTCTCCCTGCTTTCTCTTTCTCTTCCCCCTTTTCATCCGGCTCA
TCATTCCTCC
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Coding sequence (CDS) from alignment at scaffold_16:424047..425206-

>mRNA_7160 ID=mRNA_7160|Name=jgi.p|Nanoce1779_2|544251|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_16:424047..425206- (Nannochloropsis oceanica)
ATGCGTGGAGCGTTGTTGTTGTTGGATTACGAGGAGGAAGCGACGGGGCC
ATTTCGCCAGCTGTTGCTCCAGTGCTTTCTCAAGCCCACCTACCTCCGTT
CGGCCGACGGTCGTCGTCTTCTGACCTATCTTTTCGGGCTGCATCCTGCG
TTAGTAGCCGACATCCACGAGACGGTCAGGAGCCAACTACCCTACGCAAA
GAAGAAACTGGTGCAAGCCTACGGTGATGTCTACTTCCGGGCCTGGAAAG
CCGCCTCCTCTCCCTACCTCGAGGCCATCGAAACCGGGTGCATCCAAGAT
TTCATGCACGCAGCCGTCCATTCCTCGAGCCCCTCGCTCTACGTGACCCT
CCGCCTCTTCCTCCAAGCCTTCCACACCAACAAGCGCCTCCGCGATGTGG
ACGCCATGCTCCTCCGTCTCTATAACCCCATCCTCTGGCGTTCCCTCCAA
GTCGCCTCCCCCACGGTCCGCGCCCAAGCCACCGGGCTACTAGTCGATGC
CTTCCCCCTCCAAAACCCCGACATGGGTACAATAGAAGCAGCGTCACTCT
TGCAAAAGCAGCTGGACATGCTGCAAGCCCTCCTCCTGGATCCGGAACCG
CATGTGCGAGTCGCGGCGGTGGTGGGCGTGTGTCGTGTGCTCAGTGTGTT
TTGGGAGGCTATCCCCCTGCATGTGACCAAGCAATACATCACCCGTCTCG
TCGGCTCCCTCGCCTTTGATTCCTCCTCTGCTTTGGTGCGCTTGGCCGTG
GTGGAGGGGTTGACGGAGCTGCTAGAGCAGCCCCTCGCGCACCCTGTCCT
CAAGCAAGCCCTCCCCCTGACCGCCCCCCTGCTGCAGGACAAGACCCCCC
GAGTCCGTTTGGCCTTTGTGGGCCTCTTGCAGAAGGTGAAGGCGGTGCGA
GACATCAAGTTCTACCAGGTCGTCCCCGTGGAGCACCTGCTGGCACGGTT
CGCGGTGGATGCCCCCAAGGCGAGCAGCAAAGCGCTCTCGGCTCGCATGG
CTGATCTGTTGCTGAATTCCTATTTCCCCCAGGTACCTCCATTTATCCAT
TCCTCTCTTCCTCCCTCCATTCCTCTCTCCCTTCCTCTCTCCCTGCTTTC
TCTTTCTCTTCCCCCTTTTCATCCGGCTCATCATTCCTCC
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Synonyms
Publications