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Properties
| Property Name | Value |
|---|
| TranscriptId | 573987 |
| Track | FilteredModels2 |
| ProteinId | 573901 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:268321..270733 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_716 ID=mRNA_716|Name=jgi.p|Nanoce1779_2|573901|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
CAGTCGGCATTCGTCCGCCTCTCCAACAAGGCAAACGCACGCCTCAAGGC
TCTTCGTCATCATCCATGATAATGCTTCTGCAGAGCACCACCATTGCTAG
CAGGAGAGGTCGTGGACGGTCTCCTGCCTCGCTGTTGTTAGTAGGCCTGT
GCCTACTTGGCCTCTTATTGGGCGGCCATGGAGCAGAGGACTACTACAAA
ATTTTGAAAGTGAAGCGTACCGCGTCGCAATCGGAGATCAAAAAGGCATG
GCGAAAGCTGTCCTTGGATTTGCACCCCGATAAGAATAATAGCCCCACCG
CCCAAGATGACTTCGCCACGGCGTCCAACGCTTACACCATCCTGTCGAAT
GAGGAGAAGCGTGAGGTGTACGACAGGGAGGGCGTGGAGGGATTGAAGAG
GATGGATGCTCGGGAGCAGCAGGGAGGGATGGATCCGTTCGGTGGTGGGA
TTTTCGAGGCGTTCGGTTTCGGAGGCTTTGGTGGGGGGGGGCGAAGACGG
GATGAAGAGATGAAGACTCCGAATGTTGTCATACCGTTGAGGGTGTCATT
GAAACAGTTGTACACCGGGGATATTCTAGAGGTGACATATGTGAGGCAAG
TGTTGTGTATGAATCATAAGGAGTGCACGAAGAGTGATAGTTCTTGCCAC
GGGCCGGGTGTGAGGATTCGGCAGCAGCAGATTGCCCCGGGTTTCGTTCA
GCAGGTACAAGTGAGGGATGAATCGTGCGTGGCGCGAGGGAAGAGCTGGA
AGAAGGGATGTGCGGGTTGCCCGAAAGGACAGACGCAGTCGGAGGAGGTG
AAGCTGACTGTGGACATCGTGCCAGGCATGAAGGACGGGGATACCATCTC
CTTTGGGGAGGTTGCGGATGAGAAGGTTGGACATTCTGCGGGGGATCTGA
TTGTGCATATCCAGGCGATCCCGCATCAGTTTTATACGAGACAGGGGGAT
GATCTGAAGATCACGCTGAAGGTGGGCTTGCTTGATGCCCTGGTGGGGTT
TGAGACAAGCGTGCAGCAAGTAGATGGACGGGAGGTGAGTCTAATTAAGC
CGACCGTGACTTCGCATGGGGAGGTGCAACGGGTCAAGGGGCAGGGCATG
CCCAAGAAGAATGGGAATGGCCTAGGTGATTTGTTGATTACTTGGGAAGT
GACGTTCCCGGATGCGGTGACAGACGCGCAGAAAGTCTTGTTGAGGCAGG
CGTTGGCCTGAGCGGGAGGGGATGGAGAATGATGGGATACAGAATTAATG
AGTCAGTACCTGCAGCGGGAGCAGCAAACGAGCATGATTGTAGCCTAGGT
ACATAGAAAGGGGCGAGAAAAGTGAATCCGCAGCACGCTCGTAACTCAAA
AAACAAAACGTAGAGAAATAAGCGCAGGGAAATATGAAAGCCCAGCGTCA
AGCGAATAAAAATAAAATTTGTAGGCGTCCAGGTTTGATACCACCACCTC
ATGTGACTTCCTCGAGGCCTGCCGGATGAATGATTTTGTCGAGGAGGGTT
GGTGGTGGGAACAGAGATTAGAAAAGAGGACAGAAGAGCGGAAGGCGGAG
GGATGAAATGCGAAGAGCGGAAGGCAATCTCCATCCATCGCAAGAATGAT
CCCTCTTTGACATTTTTAAGATGACTATGGAGTAGATGTTCCTCCTTTTG
TATCCCTAGGACGAAGAAGACCTGAGAGAGTGTAGCAGTAGCATTGAGAG
TTAGACCCGGCAGATTGAGCGTCCGGCAGCATGAAGTGAAAAAAAAATCC
GTAAGTCCACTTTTATTTTAATATTTTGTGATGT back to topprotein sequence of jgi.p|Nanoce1779_2|573901 >mRNA_716-protein ID=mRNA_716-protein|Name=jgi.p|Nanoce1779_2|573901|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MIMLLQSTTIASRRGRGRSPASLLLVGLCLLGLLLGGHGAEDYYKILKVK
RTASQSEIKKAWRKLSLDLHPDKNNSPTAQDDFATASNAYTILSNEEKRE
VYDREGVEGLKRMDAREQQGGMDPFGGGIFEAFGFGGFGGGGRRRDEEMK
TPNVVIPLRVSLKQLYTGDILEVTYVRQVLCMNHKECTKSDSSCHGPGVR
IRQQQIAPGFVQQVQVRDESCVARGKSWKKGCAGCPKGQTQSEEVKLTVD
IVPGMKDGDTISFGEVADEKVGHSAGDLIVHIQAIPHQFYTRQGDDLKIT
LKVGLLDALVGFETSVQQVDGREVSLIKPTVTSHGEVQRVKGQGMPKKNG
NGLGDLLITWEVTFPDAVTDAQKVLLRQALA* back to topmRNA from alignment at scaffold_2:268321..270733+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_716 ID=mRNA_716|Name=jgi.p|Nanoce1779_2|573901|organism=Nannochloropsis oceanica|type=mRNA|length=2413bp|location=Sequence derived from alignment at scaffold_2:268321..270733+ (Nannochloropsis oceanica)
CAGTCGGCATTCGTCCGCCTCTCCAACAAGGCAAACGCACGCCTCAAGGC
TCTTCGTCATCATCCATGATAATGCTTCTGCAGAGCACCACCATTGCTAG
CAGGAGAGGTCGTGGACGGTCTCCTGCCTCGCTGTTGTTAGTAGGCCTGT
GCCTACTTGGCCTCTTATTGGGCGGCCATGGAGCAGAGGACTACTACAAA
ATTTTGGTAAGTGTTTTGCTCTCTCGTGTACACGAGGAAGTGGGGAGGAG
GGGGTGGATCACGGGGTCAGAGAATGGACTTGATGCACTGGAATTAATAC
GTGTACGTGTATCGTCATCGTGGCACGAAAAACTACTCTTATTCCGCTCT
TTGACTGTGGAACATGGGGTGGGTCAGTGGATGAGTCTGGGCTTGGGTTA
CTCCGAATGTCAGAATCGGAAGGGGAGTCCAGGTCTTGCACAAGTCGATC
GTCTGGTTCACGGCCCAAACAGTGTCGACTGTGAATGCAAAGCACAGTTC
TACTTCAGTGTACGCTTTTGTTCTTCAGCGTGTTTATATCTTCCTCAAAT
CCTATTTGTCCCCACACATTTTAACACTTTTCCATCATTCCTTTTCCTCT
CTCCAACACCCACAGAAAGTGAAGCGTACCGCGTCGCAATCGGAGATCAA
AAAGGCATGGCGAAAGCTGTCCTTGGATTTGCACCCCGATAAGAATAATA
GGTTAGTGTCTTGTGGGAGGTGTATGCCTTTCTTGAGGTGTTTGTGCGTC
GTGACCGGAAGGGCGTGTGCGTCCAAGACGGTGGGGGTCCACATCCGGAA
AAGGAACAGATCGATGCGCTGGCAAGCTTGCCTTTAAGAATGATATCTGT
CTCTACTTGCGACACTTTCTCTTCTCTTTGACTGACACACTTATTATGCT
ATCCCTTCTTCCCACCTTCAGCCCCACCGCCCAAGATGACTTCGCCACGG
CGTCCAACGCTTACACCATCCTGTCGAATGAGGAGAAGCGTGAGGTGTAC
GACAGGGAGGGCGTGGAGGGATTGAAGAGGATGGATGCTCGGGAGCAGCA
GGGAGGGATGGATCCGTTCGGTGGTGGGATTTTCGAGGCGTTCGGTTTCG
GAGGCTTTGGTGGGGGGGGGCGAAGACGGGATGAAGAGATGAAGACTCCG
AATGTTGTCATACCGTTGAGGGTGTCATTGAAACAGTTGTACACCGGGGA
TATTCTAGAGGTGACATATGTGAGGCAAGTGTTGTGTATGAATCATAAGG
AGTGCACGAAGAGTGATAGTTCTTGCCACGGGCCGGGTGTGAGGATTCGG
CAGCAGCAGATTGCCCCGGGTTTCGTTCAGCAGGTACAAGTGAGGGATGA
ATCGTGCGTGGCGCGAGGGAAGAGCTGGAAGAAGGGATGTGCGGGTTGCC
CGAAAGGACAGACGCAGTCGGAGGAGGTGAAGCTGACTGTGGACATCGTG
CCAGGCATGAAGGACGGGGATACCATCTCCTTTGGGGAGGTTGCGGATGA
GAAGGTTGGACATTCTGCGGGGGATCTGATTGTGCATATCCAGGCGATCC
CGCATCAGTTTTATACGAGACAGGGGGATGATCTGAAGATCACGCTGAAG
GTGGGCTTGCTTGATGCCCTGGTGGGGTTTGAGACAAGCGTGCAGCAAGT
AGATGGACGGGAGGTGAGTCTAATTAAGCCGACCGTGACTTCGCATGGGG
AGGTGCAACGGGTCAAGGGGCAGGGCATGCCCAAGAAGAATGGGAATGGC
CTAGGTGATTTGTTGATTACTTGGGAAGTGACGTTCCCGGATGCGGTGAC
AGACGCGCAGAAAGTCTTGTTGAGGCAGGCGTTGGCCTGAGCGGGAGGGG
ATGGAGAATGATGGGATACAGAATTAATGAGTCAGTACCTGCAGCGGGAG
CAGCAAACGAGCATGATTGTAGCCTAGGTACATAGAAAGGGGCGAGAAAA
GTGAATCCGCAGCACGCTCGTAACTCAAAAAACAAAACGTAGAGAAATAA
GCGCAGGGAAATATGAAAGCCCAGCGTCAAGCGAATAAAAATAAAATTTG
TAGGCGTCCAGGTTTGATACCACCACCTCATGTGACTTCCTCGAGGCCTG
CCGGATGAATGATTTTGTCGAGGAGGGTTGGTGGTGGGAACAGAGATTAG
AAAAGAGGACAGAAGAGCGGAAGGCGGAGGGATGAAATGCGAAGAGCGGA
AGGCAATCTCCATCCATCGCAAGAATGATCCCTCTTTGACATTTTTAAGA
TGACTATGGAGTAGATGTTCCTCCTTTTGTATCCCTAGGACGAAGAAGAC
CTGAGAGAGTGTAGCAGTAGCATTGAGAGTTAGACCCGGCAGATTGAGCG
TCCGGCAGCATGAAGTGAAAAAAAAATCCGTAAGTCCACTTTTATTTTAA
TATTTTGTGATGT back to topCoding sequence (CDS) from alignment at scaffold_2:268321..270733+ >mRNA_716 ID=mRNA_716|Name=jgi.p|Nanoce1779_2|573901|organism=Nannochloropsis oceanica|type=CDS|length=3438bp|location=Sequence derived from alignment at scaffold_2:268321..270733+ (Nannochloropsis oceanica)
ATGATAATGCTTCTGCAGAGCACCACCATTGCTAGCAGGAGAGGTCGTGG
ACGGTCTCCTGCCTCGCTGTTGTTAGTAGGCCTGTGCCTACTTGGCCTCT
TATTGGGCGGCCATGGAGCAGAGGACTACTACAAAATTTTGAAAGTGAAG
CGTACCGCGTCGCAATCGGAGATCAAAAAGGCATGGCGAAAGCTGTCCTT
GGATTTGCACCCCGATAAGAATAATAGCCCCACCGCCCAAGATGACTTCG
CCACGGCGTCCAACGCTTACACCATCCTGTCGAATGAGGAGAAGCGTGAG
GTGTACGACAGGGAGGGCGTGGAGGGATTGAAGAGGATGGATGCTCGGGA
GCAGCAGGGAGGGATGGATCCGTTCGGTGGTGGGATTTTCGAGGCGTTCG
GTTTCGGAGGCTTTGGTGGGGGGGGGCGAAGACGGGATGAAGAGATGAAG
ACTCCGAATGTTGTCATACCGTTGAGGGTGTCATTGAAACAGTTGTACAC
CGGGGATATTCTAGAGGTGACATATGTGAGGCAAGTGTTGTGTATGAATC
ATAAGGAGTGCACGAAGAGTGATAGTTCTTGCCACGGGCCGGGTGTGAGG
ATTCGGCAGCAGCAGATTGCCCCGGGTTTCGTTCAGCAGGTACAAGTGAG
GGATGAATCGTGCGTGGCGCGAGGGAAGAGCTGGAAGAAGGGATGTGCGG
GTTGCCCGAAAGGACAGACGCAGTCGGAGGAGGTGAAGCTGACTGTGGAC
ATCGTGCCAGGCATGAAGGACGGGGATACCATCTCCTTTGGGGAGGTTGC
GGATGAGAAGGTTGGACATTCTGCGGGGGATCTGATTGTGCATATCCAGG
CGATCCCGCATCAGTTTTATACGAGACAGGGGGATGATCTGAAGATCACG
CTGAAGGTGGGCTTGCTTGATGCCCTGGTGGGGTTTGAGACAAGCGTGCA
GCAAGTAGATGGACGGGAGGTGAGTCTAATTAAGCCGACCGTGACTTCGC
ATGGGGAGGTGCAACGGGTCAAGGGGCAGGGCATGCCCAAGAAGAATGGG
AATGGCCTAGGTGATTTGTTGATTACTTGGGAAGTGACGTTCCCGGATGC
GGTGACAGACGCGCAGAAAGTCTTGTTGAGGCAGGCGTTGGCCTGAATGA
TAATGCTTCTGCAGAGCACCACCATTGCTAGCAGGAGAGGTCGTGGACGG
TCTCCTGCCTCGCTGTTGTTAGTAGGCCTGTGCCTACTTGGCCTCTTATT
GGGCGGCCATGGAGCAGAGGACTACTACAAAATTTTGAAAGTGAAGCGTA
CCGCGTCGCAATCGGAGATCAAAAAGGCATGGCGAAAGCTGTCCTTGGAT
TTGCACCCCGATAAGAATAATAGCCCCACCGCCCAAGATGACTTCGCCAC
GGCGTCCAACGCTTACACCATCCTGTCGAATGAGGAGAAGCGTGAGGTGT
ACGACAGGGAGGGCGTGGAGGGATTGAAGAGGATGGATGCTCGGGAGCAG
CAGGGAGGGATGGATCCGTTCGGTGGTGGGATTTTCGAGGCGTTCGGTTT
CGGAGGCTTTGGTGGGGGGGGGCGAAGACGGGATGAAGAGATGAAGACTC
CGAATGTTGTCATACCGTTGAGGGTGTCATTGAAACAGTTGTACACCGGG
GATATTCTAGAGGTGACATATGTGAGGCAAGTGTTGTGTATGAATCATAA
GGAGTGCACGAAGAGTGATAGTTCTTGCCACGGGCCGGGTGTGAGGATTC
GGCAGCAGCAGATTGCCCCGGGTTTCGTTCAGCAGGTACAAGTGAGGGAT
GAATCGTGCGTGGCGCGAGGGAAGAGCTGGAAGAAGGGATGTGCGGGTTG
CCCGAAAGGACAGACGCAGTCGGAGGAGGTGAAGCTGACTGTGGACATCG
TGCCAGGCATGAAGGACGGGGATACCATCTCCTTTGGGGAGGTTGCGGAT
GAGAAGGTTGGACATTCTGCGGGGGATCTGATTGTGCATATCCAGGCGAT
CCCGCATCAGTTTTATACGAGACAGGGGGATGATCTGAAGATCACGCTGA
AGGTGGGCTTGCTTGATGCCCTGGTGGGGTTTGAGACAAGCGTGCAGCAA
GTAGATGGACGGGAGGTGAGTCTAATTAAGCCGACCGTGACTTCGCATGG
GGAGGTGCAACGGGTCAAGGGGCAGGGCATGCCCAAGAAGAATGGGAATG
GCCTAGGTGATTTGTTGATTACTTGGGAAGTGACGTTCCCGGATGCGGTG
ACAGACGCGCAGAAAGTCTTGTTGAGGCAGGCGTTGGCCTGAATGATAAT
GCTTCTGCAGAGCACCACCATTGCTAGCAGGAGAGGTCGTGGACGGTCTC
CTGCCTCGCTGTTGTTAGTAGGCCTGTGCCTACTTGGCCTCTTATTGGGC
GGCCATGGAGCAGAGGACTACTACAAAATTTTGAAAGTGAAGCGTACCGC
GTCGCAATCGGAGATCAAAAAGGCATGGCGAAAGCTGTCCTTGGATTTGC
ACCCCGATAAGAATAATAGCCCCACCGCCCAAGATGACTTCGCCACGGCG
TCCAACGCTTACACCATCCTGTCGAATGAGGAGAAGCGTGAGGTGTACGA
CAGGGAGGGCGTGGAGGGATTGAAGAGGATGGATGCTCGGGAGCAGCAGG
GAGGGATGGATCCGTTCGGTGGTGGGATTTTCGAGGCGTTCGGTTTCGGA
GGCTTTGGTGGGGGGGGGCGAAGACGGGATGAAGAGATGAAGACTCCGAA
TGTTGTCATACCGTTGAGGGTGTCATTGAAACAGTTGTACACCGGGGATA
TTCTAGAGGTGACATATGTGAGGCAAGTGTTGTGTATGAATCATAAGGAG
TGCACGAAGAGTGATAGTTCTTGCCACGGGCCGGGTGTGAGGATTCGGCA
GCAGCAGATTGCCCCGGGTTTCGTTCAGCAGGTACAAGTGAGGGATGAAT
CGTGCGTGGCGCGAGGGAAGAGCTGGAAGAAGGGATGTGCGGGTTGCCCG
AAAGGACAGACGCAGTCGGAGGAGGTGAAGCTGACTGTGGACATCGTGCC
AGGCATGAAGGACGGGGATACCATCTCCTTTGGGGAGGTTGCGGATGAGA
AGGTTGGACATTCTGCGGGGGATCTGATTGTGCATATCCAGGCGATCCCG
CATCAGTTTTATACGAGACAGGGGGATGATCTGAAGATCACGCTGAAGGT
GGGCTTGCTTGATGCCCTGGTGGGGTTTGAGACAAGCGTGCAGCAAGTAG
ATGGACGGGAGGTGAGTCTAATTAAGCCGACCGTGACTTCGCATGGGGAG
GTGCAACGGGTCAAGGGGCAGGGCATGCCCAAGAAGAATGGGAATGGCCT
AGGTGATTTGTTGATTACTTGGGAAGTGACGTTCCCGGATGCGGTGACAG
ACGCGCAGAAAGTCTTGTTGAGGCAGGCGTTGGCCTGA back to top
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