jgi.p|Nanoce1779_2|105345, mRNA_7158 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|105345
Unique NamemRNA_7158
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length559
Alignment locationscaffold_16:420852..421524 +

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Properties
Property NameValue
TranscriptId105431
TrackFilteredModels2
ProteinId105345
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:420852..421524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105345gene_7158Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105345mRNA_7158-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7158CDS_7158Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7158 ID=mRNA_7158|Name=jgi.p|Nanoce1779_2|105345|organism=Nannochloropsis oceanica|type=mRNA|length=559bp
CGGAGGATGAGGACGAGGACGAGGACGAGGACGAGGAGGATGACGGGGAG
ATAGAGAATGAGTATGAAGTAGGCATGGGAAGATCGTGGGAGAGTGGGGA
GAACAGCGCGGACATTCCTGCCACGGAGGAAGACGTGGAAGTAAGCTAGC
TAAATTGCATGCATTTCATTCGAAGATTTCAGCCTGGTGGGCTGAAGAAA
ATTAAACGAAACAAACGTGAAATGCGCTGTGGGATTGTGCGTGTGATTCA
TTGCTTGAGTCCTTTTTGCCAGTGCAAGGTCGTGATTATACTATGGTTCC
GTAGCACTTATTCCTTCTTTCTTCCGGGCTTTCCTTCTTTTCAGGCTAGC
ATTTTCAATGTTTCTTACTTCCTTTTAATCTGCTTCTTTTTGGTTTTTGA
CGTTTCTGCATTCTCTCGCATCGGTCGTCTACTTCACTGACTTACTTCAT
CCTCACTTTCACCTCAATTTTTCACACGCACGCACACACATACACACACA
CACATAGAGAGAGAGAGAGAGAGAGAGAGCCGCAAGTATATGTCACCCTG
TGCCATATA
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protein sequence of jgi.p|Nanoce1779_2|105345

>mRNA_7158-protein ID=mRNA_7158-protein|Name=jgi.p|Nanoce1779_2|105345|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MHFIRRFQPGGLKKIKRNKREMRCGIVRVIHCLSPFCQCKVVIILWFRST
YSFFLPGFPSFQASIFNVSYFLLICFFLVFDVSAFSRIGRLLH*
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mRNA from alignment at scaffold_16:420852..421524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7158 ID=mRNA_7158|Name=jgi.p|Nanoce1779_2|105345|organism=Nannochloropsis oceanica|type=mRNA|length=673bp|location=Sequence derived from alignment at scaffold_16:420852..421524+ (Nannochloropsis oceanica)
CGGAGGATGAGGACGAGGACGAGGACGAGGACGAGGAGGATGACGGGGAG
ATAGAGAATGAGTATGAAGTAGGCATGGGAAGATCGTGGGAGAGTGGGGA
GAACAGCGCGGACATTCCTGCCACGGAGGAAGACGTGGAAGTAAGCTAGC
TAAATTGCATGCATTTCATTCGAAGATTTCAGCCTGGTGGGCTGAAGAAA
ATTAAACGAAACAAACGTGAAATGCGCTGTGGGATTGTGCGTGTGATTCA
TTGCTTGAGTCCTTTTTGCCAGTGCAAGGTCGTGATTATACTATGGTTCC
GTAGCACTTATTCCTTCTTTCTTCCGGGCTTTCCTTCTTTTCAGGCTAGC
ATTTTCAATGTTTCTTACTTCCTTTTAATCTGCTTCTTTTTGGTTTTTGA
CGTTTCTGCATTCTCTCGCATCGGTCGTCTACTTCACTGACTTACTTCAT
CCTCACTTTCACCTCAATTTTTCACACGCACGCACACACATACACACACA
CACATGCACACACACACACACACACACACACACACACACACACACACACA
CACACACACAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGCAAG
TATATGTCACCCTGTGCCATATA
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Coding sequence (CDS) from alignment at scaffold_16:420852..421524+

>mRNA_7158 ID=mRNA_7158|Name=jgi.p|Nanoce1779_2|105345|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_16:420852..421524+ (Nannochloropsis oceanica)
ATGCATTTCATTCGAAGATTTCAGCCTGGTGGGCTGAAGAAAATTAAACG
AAACAAACGTGAAATGCGCTGTGGGATTGTGCGTGTGATTCATTGCTTGA
GTCCTTTTTGCCAGTGCAAGGTCGTGATTATACTATGGTTCCGTAGCACT
TATTCCTTCTTTCTTCCGGGCTTTCCTTCTTTTCAGGCTAGCATTTTCAA
TGTTTCTTACTTCCTTTTAATCTGCTTCTTTTTGGTTTTTGACGTTTCTG
CATTCTCTCGCATCGGTCGTCTACTTCACTGA
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Synonyms
Publications