jgi.p|Nanoce1779_2|595815, mRNA_7155 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595815
Unique NamemRNA_7155
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1220
Alignment locationscaffold_16:414337..415556 -

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Properties
Property NameValue
TranscriptId595901
TrackFilteredModels2
ProteinId595815
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:414337..415556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595815gene_7155Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595815mRNA_7155-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7155CDS_7155Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7155 ID=mRNA_7155|Name=jgi.p|Nanoce1779_2|595815|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp
CGGGCTTCGCGTAACGGAACGCTGCTTGCTTCTCCGCCGGGCGGCACCTG
CATCATATTCACACGAGCACTTATTACCAACCATTCATACGTCCTCGGCT
AGCCATAGAGAGCCGTCACTATACTTCCTGCACACCATAGGAGTGATCTC
TCCATCTCTATTGCGAAGAAACGTCGTCTTCTCCCAAGCAACATGACCTC
CTGTCCCCTCCGTCCGACCGAACGACTCTACCTGGACGACACGCACCTGT
ATACGACGACGTCCACCGTGTTGGCCGTGGAGCCTGTGACCGTCCCGGGT
GATAAAGACTCGATGCGTTTCACTGTGGTGACCGAGGCCACAGTATTCCA
TCCGCAAGGCGGAGGACAGCCATCTGACGTGGGATGCATCGTTTGCGATG
GTGATGCTGGCGTCACCTTTGTCGTTGACAGCGTGCGAAGTGGCGAGGGC
GGGGTCATTTATCATTTTGGCACCTTGGCTTCCACCACAGACCAGCACGA
GGACGGGAATAGTAGCAACAGCAGCAGCAGCTGCAGCAATTGCAGCATTT
GCCTTCCTTTTCATGTCGGCCAGGCAGTAACACTCGAGATTGACGCGGAT
AGCCGACGGCTCCACTCCCGCTTGCACTCGGCGGGCCATGCCTTGGACGT
GGCGGTCCTTCAACTAGGCATGCAACTTCGACCATCGAAAGGGTATCACT
TTCAAGACGCGCCGTATGTCGAATACTTTGGACGGCTTCTTCCAGAGGCT
GGCACCGCCGTTGAAGTTGCTACGGCACTCACAGAGAAAATGAAGACATT
AGTTGAAGCTGACATTCCTTTTGAAGTAAAGGTTACTTCAAAGGTGGATG
CAGCTAAGCTGTTGCCAGGGGGGAAGGACGACGTGGCCCATTTTGCGGAG
GAGGCGCTGGTGAGGTTGGTCTCAGTGGGGGGAAATTTGTGCCTGTGTGG
AGGGACCCATGTGAAGAGCACAGGCGAGTTGGGCATGGTAGAAGTGACCA
AGATTAAAACAAAAAAGGATGTGACGAGGATCAGTTATCGGTTGAAGGTT
GGCGCGGAGGAGGAAGTGAAGAAGTGCAGTGAGGTCTAAGGGTATACGGG
GAAGAGGAAGTGGATGCATATAAATAGTACTTTGTGAGATGTAGCTGAAG
GATAAGACGGAGCAACACGACAAACTAAACATCTTGTATAATCAAAAAAG
AGACGAGAAATAGTGGGGAG
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protein sequence of jgi.p|Nanoce1779_2|595815

>mRNA_7155-protein ID=mRNA_7155-protein|Name=jgi.p|Nanoce1779_2|595815|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MTSCPLRPTERLYLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEAT
VFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTD
QHEDGNSSNSSSSCSNCSICLPFHVGQAVTLEIDADSRRLHSRLHSAGHA
LDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKM
KTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNLC
LCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRLKVGAEEEVKKCSEV*
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mRNA from alignment at scaffold_16:414337..415556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7155 ID=mRNA_7155|Name=jgi.p|Nanoce1779_2|595815|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp|location=Sequence derived from alignment at scaffold_16:414337..415556- (Nannochloropsis oceanica)
CGGGCTTCGCGTAACGGAACGCTGCTTGCTTCTCCGCCGGGCGGCACCTG
CATCATATTCACACGAGCACTTATTACCAACCATTCATACGTCCTCGGCT
AGCCATAGAGAGCCGTCACTATACTTCCTGCACACCATAGGAGTGATCTC
TCCATCTCTATTGCGAAGAAACGTCGTCTTCTCCCAAGCAACATGACCTC
CTGTCCCCTCCGTCCGACCGAACGACTCTACCTGGACGACACGCACCTGT
ATACGACGACGTCCACCGTGTTGGCCGTGGAGCCTGTGACCGTCCCGGGT
GATAAAGACTCGATGCGTTTCACTGTGGTGACCGAGGCCACAGTATTCCA
TCCGCAAGGCGGAGGACAGCCATCTGACGTGGGATGCATCGTTTGCGATG
GTGATGCTGGCGTCACCTTTGTCGTTGACAGCGTGCGAAGTGGCGAGGGC
GGGGTCATTTATCATTTTGGCACCTTGGCTTCCACCACAGACCAGCACGA
GGACGGGAATAGTAGCAACAGCAGCAGCAGCTGCAGCAATTGCAGCATTT
GCCTTCCTTTTCATGTCGGCCAGGCAGTAACACTCGAGATTGACGCGGAT
AGCCGACGGCTCCACTCCCGCTTGCACTCGGCGGGCCATGCCTTGGACGT
GGCGGTCCTTCAACTAGGCATGCAACTTCGACCATCGAAAGGGTATCACT
TTCAAGACGCGCCGTATGTCGAATACTTTGGACGGCTTCTTCCAGAGGCT
GGCACCGCCGTTGAAGTTGCTACGGCACTCACAGAGAAAATGAAGACATT
AGTTGAAGCTGACATTCCTTTTGAAGTAAAGGTTACTTCAAAGGTGGATG
CAGCTAAGCTGTTGCCAGGGGGGAAGGACGACGTGGCCCATTTTGCGGAG
GAGGCGCTGGTGAGGTTGGTCTCAGTGGGGGGAAATTTGTGCCTGTGTGG
AGGGACCCATGTGAAGAGCACAGGCGAGTTGGGCATGGTAGAAGTGACCA
AGATTAAAACAAAAAAGGATGTGACGAGGATCAGTTATCGGTTGAAGGTT
GGCGCGGAGGAGGAAGTGAAGAAGTGCAGTGAGGTCTAAGGGTATACGGG
GAAGAGGAAGTGGATGCATATAAATAGTACTTTGTGAGATGTAGCTGAAG
GATAAGACGGAGCAACACGACAAACTAAACATCTTGTATAATCAAAAAAG
AGACGAGAAATAGTGGGGAG
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Coding sequence (CDS) from alignment at scaffold_16:414337..415556-

>mRNA_7155 ID=mRNA_7155|Name=jgi.p|Nanoce1779_2|595815|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at scaffold_16:414337..415556- (Nannochloropsis oceanica)
ATGACCTCCTGTCCCCTCCGTCCGACCGAACGACTCTACCTGGACGACAC
GCACCTGTATACGACGACGTCCACCGTGTTGGCCGTGGAGCCTGTGACCG
TCCCGGGTGATAAAGACTCGATGCGTTTCACTGTGGTGACCGAGGCCACA
GTATTCCATCCGCAAGGCGGAGGACAGCCATCTGACGTGGGATGCATCGT
TTGCGATGGTGATGCTGGCGTCACCTTTGTCGTTGACAGCGTGCGAAGTG
GCGAGGGCGGGGTCATTTATCATTTTGGCACCTTGGCTTCCACCACAGAC
CAGCACGAGGACGGGAATAGTAGCAACAGCAGCAGCAGCTGCAGCAATTG
CAGCATTTGCCTTCCTTTTCATGTCGGCCAGGCAGTAACACTCGAGATTG
ACGCGGATAGCCGACGGCTCCACTCCCGCTTGCACTCGGCGGGCCATGCC
TTGGACGTGGCGGTCCTTCAACTAGGCATGCAACTTCGACCATCGAAAGG
GTATCACTTTCAAGACGCGCCGTATGTCGAATACTTTGGACGGCTTCTTC
CAGAGGCTGGCACCGCCGTTGAAGTTGCTACGGCACTCACAGAGAAAATG
AAGACATTAGTTGAAGCTGACATTCCTTTTGAAGTAAAGGTTACTTCAAA
GGTGGATGCAGCTAAGCTGTTGCCAGGGGGGAAGGACGACGTGGCCCATT
TTGCGGAGGAGGCGCTGGTGAGGTTGGTCTCAGTGGGGGGAAATTTGTGC
CTGTGTGGAGGGACCCATGTGAAGAGCACAGGCGAGTTGGGCATGGTAGA
AGTGACCAAGATTAAAACAAAAAAGGATGTGACGAGGATCAGTTATCGGT
TGAAGGTTGGCGCGGAGGAGGAAGTGAAGAAGTGCAGTGAGGTCTAA
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Synonyms
Publications