jgi.p|Nanoce1779_2|595807, mRNA_7154 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595807
Unique Name	mRNA_7154
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1880
Alignment location	scaffold_16:412447..414326 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595893
Track	FilteredModels2
ProteinId	595807

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:412447..414326 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595807	gene_7154	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595807	mRNA_7154-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7154	CDS_7154	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:412447..414326+
coding sequence from alignment at scaffold_16:412447..414326+

mRNA sequence

>mRNA_7154 ID=mRNA_7154|Name=jgi.p|Nanoce1779_2|595807|organism=Nannochloropsis oceanica|type=mRNA|length=1880bp
CAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCATGCCCA
CCCTTCCACCCTCATTCTCCGTTTCCTCCTTTTCTCAATGGCTGAATGGC
AGCCACACCCTCACTCCCGCCGACACCAACCTCGGCCAGCGGCAACACCA
GCAACAGCTCGACAAAGCCCCTCCCTCCTCCAAACTCCCCCCTCTTCCAT
CTTTTCCTCGCGCCCCCACCACTGTCACCTCCCCCGCCGTCCTCCTTGAC
ACTGCTCCTTCAGGCCCGCTCGACACACCTGACTTGCCTCCTGCATCGTC
CCTTTCCTTCCAACCTCCCCCTCCCCCAAGGCCCTTGGCGAAACGCTGTT
CCTCCATGAGCTCGGAATTATGGCGTGGCTGGGGTAGCGCTGGGGATTTG
CAGGCTCTGGCTGAACTGGACAATTCTATTGACGATATTTTTGGTGGTCC
AGACACAGAGACTGCCCTCTTCTCCGCAGGAGGGGGGGTAGAGGGATCAA
CAGGGGGGGCGACTGGTGCTGCTGCGAGGTATCAGCATGAGGCGGCGACG
GCAATGCCTGTGCAAAATGTGGGGGTGGGTTTGGGGGCCTTTATCGGGAT
AACGGCTGCGTGACTATAAAGGTAAAAGAGGAGGAAGAAAGTAGATATGG
AGAGGGGCAGAAAGAGAAAGCTGGAGTTCTTGGGACTGTTTTCTCTCTCC
TCCATCCTACAGCCTCAACCAACCAGCAAGCGCTTCAGTGAGTGTCAGTA
CTCATTAGTTTTCGTGTACGTACATCTATCTTTCCCTGTGAACATACCGC
CTCGAAGCGAAATCCAAAACAAGACGAGAAAGAGAGGGAGGGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGA
GAATTTTGAGGTAACAAGAATACAATTCAGGATATGCGAAAATAAGAAGA
AGCAAAGCAAGAGGATGTGAGTAGAAAAACTTCAGAGACGTGAAAGACAC
GAGAAAAATCGCCCTCCCTTCCTCCCCGGTCGGAAAACGCGAAAAGGGAA
GCTCAAAAAGAAACCACAGTTTTGTGTGAAGCCAGAGAGAAGAAATATCA
AACAACATACAGAAGCGAAAGAATACGATGGAAGGGGGAGAGAAAGGGGG
AAAAGAGATAGAACAAACAATGGAATCAGAGCGAGATATAAAAAGGATGG
TGAGATGGACAACACGTCGACGTGGTGACTATAACCGAATCAACAAATGC
ACGCGCATCTGTAAGTCCGTGAATGAAGAACTTACTTATAATTATATATT
GTGATTCACGTGAAAGAAGATAAATCGAAGTGCGTGTCTGTATTTGTGTA
GGGAGCTGCGGTCGAACGGTAAAGAGAAGGGGAGACAAAAGACAGACCAA
ACTCCAAGCGAGGATTAAAGCTAGAACCTATTTTGTTACAGAATGTGAAT
AGAATATGAGAAGAGGAGGTAGAGATGATTGTGAAGCTGTGCGGATTAAG
AAATTTCAAGACGACGAAAGTGAAAGAGACAAGATGTACCTTGGAAGAAT
GGAGTGAAGAGGTTATAAGATGCAATGTTCGCACAGACACTAAGACATTT
CGTAGATGACAGGGCAGAGAGAGCCCGTTTATATATCCACTCACTTGATT
GATATATAAGTGAATCAAGAATCAGTATAAAATTATTGGGGTTGGATGGG
CAACGTTTTGGAGCCTTTAACCCCCCTCTCGAACCCCGCCACCGCTGCAG
GAAAGGTGGATGAGGAAATCATGGAGGAGATGGTGTCCTTTTCGATGCGT
TGTCCCACCTGCGCCCTGGTACTTATTGAAACATGGCTTCAAAACAACAA
ACAGAAGAAGAGAAATAAAGACTTTTCAAA

protein sequence of jgi.p|Nanoce1779_2|595807

>mRNA_7154-protein ID=mRNA_7154-protein|Name=jgi.p|Nanoce1779_2|595807|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MPTLPPSFSVSSFSQWLNGSHTLTPADTNLGQRQHQQQLDKAPPSSKLPP
LPSFPRAPTTVTSPAVLLDTAPSGPLDTPDLPPASSLSFQPPPPPRPLAK
RCSSMSSELWRGWGSAGDLQALAELDNSIDDIFGGPDTETALFSAGGGVE
GSTGGATGAAARYQHEAATAMPVQNVGVGLGAFIGITAA*

mRNA from alignment at scaffold_16:412447..414326+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7154 ID=mRNA_7154|Name=jgi.p|Nanoce1779_2|595807|organism=Nannochloropsis oceanica|type=mRNA|length=1880bp|location=Sequence derived from alignment at scaffold_16:412447..414326+ (Nannochloropsis oceanica)
CAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCATGCCCA
CCCTTCCACCCTCATTCTCCGTTTCCTCCTTTTCTCAATGGCTGAATGGC
AGCCACACCCTCACTCCCGCCGACACCAACCTCGGCCAGCGGCAACACCA
GCAACAGCTCGACAAAGCCCCTCCCTCCTCCAAACTCCCCCCTCTTCCAT
CTTTTCCTCGCGCCCCCACCACTGTCACCTCCCCCGCCGTCCTCCTTGAC
ACTGCTCCTTCAGGCCCGCTCGACACACCTGACTTGCCTCCTGCATCGTC
CCTTTCCTTCCAACCTCCCCCTCCCCCAAGGCCCTTGGCGAAACGCTGTT
CCTCCATGAGCTCGGAATTATGGCGTGGCTGGGGTAGCGCTGGGGATTTG
CAGGCTCTGGCTGAACTGGACAATTCTATTGACGATATTTTTGGTGGTCC
AGACACAGAGACTGCCCTCTTCTCCGCAGGAGGGGGGGTAGAGGGATCAA
CAGGGGGGGCGACTGGTGCTGCTGCGAGGTATCAGCATGAGGCGGCGACG
GCAATGCCTGTGCAAAATGTGGGGGTGGGTTTGGGGGCCTTTATCGGGAT
AACGGCTGCGTGACTATAAAGGTAAAAGAGGAGGAAGAAAGTAGATATGG
AGAGGGGCAGAAAGAGAAAGCTGGAGTTCTTGGGACTGTTTTCTCTCTCC
TCCATCCTACAGCCTCAACCAACCAGCAAGCGCTTCAGTGAGTGTCAGTA
CTCATTAGTTTTCGTGTACGTACATCTATCTTTCCCTGTGAACATACCGC
CTCGAAGCGAAATCCAAAACAAGACGAGAAAGAGAGGGAGGGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGA
GAATTTTGAGGTAACAAGAATACAATTCAGGATATGCGAAAATAAGAAGA
AGCAAAGCAAGAGGATGTGAGTAGAAAAACTTCAGAGACGTGAAAGACAC
GAGAAAAATCGCCCTCCCTTCCTCCCCGGTCGGAAAACGCGAAAAGGGAA
GCTCAAAAAGAAACCACAGTTTTGTGTGAAGCCAGAGAGAAGAAATATCA
AACAACATACAGAAGCGAAAGAATACGATGGAAGGGGGAGAGAAAGGGGG
AAAAGAGATAGAACAAACAATGGAATCAGAGCGAGATATAAAAAGGATGG
TGAGATGGACAACACGTCGACGTGGTGACTATAACCGAATCAACAAATGC
ACGCGCATCTGTAAGTCCGTGAATGAAGAACTTACTTATAATTATATATT
GTGATTCACGTGAAAGAAGATAAATCGAAGTGCGTGTCTGTATTTGTGTA
GGGAGCTGCGGTCGAACGGTAAAGAGAAGGGGAGACAAAAGACAGACCAA
ACTCCAAGCGAGGATTAAAGCTAGAACCTATTTTGTTACAGAATGTGAAT
AGAATATGAGAAGAGGAGGTAGAGATGATTGTGAAGCTGTGCGGATTAAG
AAATTTCAAGACGACGAAAGTGAAAGAGACAAGATGTACCTTGGAAGAAT
GGAGTGAAGAGGTTATAAGATGCAATGTTCGCACAGACACTAAGACATTT
CGTAGATGACAGGGCAGAGAGAGCCCGTTTATATATCCACTCACTTGATT
GATATATAAGTGAATCAAGAATCAGTATAAAATTATTGGGGTTGGATGGG
CAACGTTTTGGAGCCTTTAACCCCCCTCTCGAACCCCGCCACCGCTGCAG
GAAAGGTGGATGAGGAAATCATGGAGGAGATGGTGTCCTTTTCGATGCGT
TGTCCCACCTGCGCCCTGGTACTTATTGAAACATGGCTTCAAAACAACAA
ACAGAAGAAGAGAAATAAAGACTTTTCAAA

Coding sequence (CDS) from alignment at scaffold_16:412447..414326+

>mRNA_7154 ID=mRNA_7154|Name=jgi.p|Nanoce1779_2|595807|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_16:412447..414326+ (Nannochloropsis oceanica)
ATGCCCACCCTTCCACCCTCATTCTCCGTTTCCTCCTTTTCTCAATGGCT
GAATGGCAGCCACACCCTCACTCCCGCCGACACCAACCTCGGCCAGCGGC
AACACCAGCAACAGCTCGACAAAGCCCCTCCCTCCTCCAAACTCCCCCCT
CTTCCATCTTTTCCTCGCGCCCCCACCACTGTCACCTCCCCCGCCGTCCT
CCTTGACACTGCTCCTTCAGGCCCGCTCGACACACCTGACTTGCCTCCTG
CATCGTCCCTTTCCTTCCAACCTCCCCCTCCCCCAAGGCCCTTGGCGAAA
CGCTGTTCCTCCATGAGCTCGGAATTATGGCGTGGCTGGGGTAGCGCTGG
GGATTTGCAGGCTCTGGCTGAACTGGACAATTCTATTGACGATATTTTTG
GTGGTCCAGACACAGAGACTGCCCTCTTCTCCGCAGGAGGGGGGGTAGAG
GGATCAACAGGGGGGGCGACTGGTGCTGCTGCGAGGTATCAGCATGAGGC
GGCGACGGCAATGCCTGTGCAAAATGTGGGGGTGGGTTTGGGGGCCTTTA
TCGGGATAACGGCTGCGTGA

Synonyms

Publications