jgi.p|Nanoce1779_2|595798, mRNA_7153 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595798
Unique Name	mRNA_7153
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2315
Alignment location	scaffold_16:409352..411666 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595884
Track	FilteredModels2
ProteinId	595798

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:409352..411666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595798	gene_7153	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595798	mRNA_7153-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7153	CDS_7153	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:409352..411666+
coding sequence from alignment at scaffold_16:409352..411666+

mRNA sequence

>mRNA_7153 ID=mRNA_7153|Name=jgi.p|Nanoce1779_2|595798|organism=Nannochloropsis oceanica|type=mRNA|length=2315bp
CGTATTGTCGGTGAAATTGTCTGTAGATCTTGGCAAATGCCTTGCCGCGG
CTCAATACTTCAGTTACGACCGTAGGAGCCTATCCGTTTGCCGGGTCTCG
GCGGCCGAGGCTCGGAGTGGTTGAAATGTTTGCTTCCTCGGACTTTGATC
GAGAGAAAAGGCCTTCAAAAAGCATATGGCAAGCAAAAATGCAAAACCGT
GCCTCCTTCTCGGATTGCTTCTCCTTCTTCCTTTCTTGCCACGTGTCGTT
GCTATTTGCGCTTATTTGTGGTCGCGGCGGAGGCACAAACAAGGCACTTA
CGAGGGTGGCACAGGAATCGCTTCAAGGAAGCTCTCACTTGTTTCTCTCG
AACGCAAGAACAGATGTCCCAGGGGCACGACCCGTTGTAGGTCTAGCCCT
GATCGAACCCGCGAGGTGTTTGGAAGTCTCTTGTGTTGAGTTTTCACGCC
TCGAGGGCACCAAAAGGGGCCTCTCGCTCCAGCCGCCCTTTCGCGTGTAA
GGACTGGGGACGAAGGGCATGTTGAGCATCATTTATTGGCATTACAACAC
GACGCCTAGGCAAGATCGTGGAAACCCCCAACAAGAACACCAAAATGGCA
CACACTGGTTCCTGATCGCAGCGCAGCATTGCAGTCGCTTCCTCCTCCGA
CTACCTAGTCAGACAAGTGCCCTGGCAACAACTGCGTGGCAAATGACGAC
CAACATCATCATCACACACATCACCGACTTGGACATAATTGTGGTGCCGG
GTCTAGAAGCTCGCTGGACAACACCTCAAGCTCGAGTAGCAGACAAAGTC
AACCCTCCTCACCCCTGGAGTGCCTCTCATATATGTTTTCAAGAAAATGG
GAGTCCTTAGGAGGATCAGCAATTGCACGCGCTCTGTTGAGCCTTGACCA
TGCTACCATTACCTAACTCACGTCCTCTAACTCCACCCTTCTCCCGCCCC
AAAAGCACTCGTTTATCTACTAGCCCAATAGAACCGAGGGACGACAGTCG
CGCAGGTGCAACACACGTATCACTCGGCCCGTGGTCCTATCCAACGGAGA
TCACATTTTTAAATCATCACCGCAAGTCACCGCCATGACCCGCGCCTTCC
GCAGCGCCCGTGCCTCCTCGAACAGCAGCAGCAGCAGCAACAGCAACAGG
AGAGGTCATCCCACATGCAAAGCACCCAATGATGCGACCGGTACAGGCAG
GATGATCAACGCCAGCACTTCAGGCTCGAGTAGCACGTTGGACGCCGCCA
ACGGCCTTACTTTCCCTCGCAAGCTGGCCGAGATGCTCGAGTACGGAGAG
AACGTTATTGTGTGGTCGCAGCATGGTCTCTCCTTCTATATCTGCGATGA
GGACGCTCTAGCTCACAAACTCTTGCCCCAGTACTTTCGACGTGAGTGAA
GGAGCGGGAGGGATGGGGGCCGAGGAGGAGGAGGAGGAGGAAGGGTGTTG
AGGAGAAAGTGAATGTGTCGAGGATGGTGATGCAGCAGGTCTGGGCTTTG
TATGTGGTGCTGATCGTTGTCCTACATTTTTTAATCCTCCTCACATGGCC
TATCTGGCCTGATATCTTCGTGTTCGCACTTTCTCCTTTTTCCGTCCATT
TTTGCTCATGAGCGACCTACACACACTCATGCACACAAACATGCACACAT
ATATACCAGACAACAAAATAACCTCCTTCCAACGACAACTCAACCTCTAT
GGCTTCCGACGCATCACCAAAGGGGTCGACACAGGCGCCTATTTCCACCC
TCAGTTCCGTCGAGATCGGCCGGACCTGGTCAGTCACATTCGGCGCATGC
CAGGGCAAGGCGCGACGGCCACCGCCAAATTTCTCCCACTCTACTACAAG
GACGTACAAAATTCTGCGCCCGTCCATATCACTCCTACTAGTGATGCTGC
TGCTGCTGGGTACTCTTTCGCCGCCTTTTCCTCCTCCCTCGATAGCGACA
CCACCATGACCACTCTGGGGGGAAATAGCAGCGGCAGCAGCAGTACCACC
AGCAGCGTCAGCACCAGCTATAGTAGGAAGAGTGACCGCGCTAGGGCTAC
CAAACCTCGCCGTCGTCGTCGCGTCCGCTCGGAGTCGAGTGCCTCGAACG
TCACACACACCTCGTCCTGTTCTGATTCCTCTTTCCCTTCCCCCTCCACT
AGCTCCTACGTTGAGGAGGACGATGACGGTGAACTGTTCTTGAAGGTGGG
TGCTGAGGTGGAGGCCGGGAAGAGCGAACAGTTTTATATGGAAGATGGGG
CGTTGGATTACTATGAAAGCGACAGAAATGGAGAAGAGCATGACGAGGAC
GGGAAGGAAGAGGGG

protein sequence of jgi.p|Nanoce1779_2|595798

>mRNA_7153-protein ID=mRNA_7153-protein|Name=jgi.p|Nanoce1779_2|595798|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MTRAFRSARASSNSSSSSNSNRRGHPTCKAPNDATGTGRMINASTSGSSS
TLDAANGLTFPRKLAEMLEYGENVIVWSQHGLSFYICDEDALAHKLLPQY
FRRE*

mRNA from alignment at scaffold_16:409352..411666+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7153 ID=mRNA_7153|Name=jgi.p|Nanoce1779_2|595798|organism=Nannochloropsis oceanica|type=mRNA|length=2315bp|location=Sequence derived from alignment at scaffold_16:409352..411666+ (Nannochloropsis oceanica)
CGTATTGTCGGTGAAATTGTCTGTAGATCTTGGCAAATGCCTTGCCGCGG
CTCAATACTTCAGTTACGACCGTAGGAGCCTATCCGTTTGCCGGGTCTCG
GCGGCCGAGGCTCGGAGTGGTTGAAATGTTTGCTTCCTCGGACTTTGATC
GAGAGAAAAGGCCTTCAAAAAGCATATGGCAAGCAAAAATGCAAAACCGT
GCCTCCTTCTCGGATTGCTTCTCCTTCTTCCTTTCTTGCCACGTGTCGTT
GCTATTTGCGCTTATTTGTGGTCGCGGCGGAGGCACAAACAAGGCACTTA
CGAGGGTGGCACAGGAATCGCTTCAAGGAAGCTCTCACTTGTTTCTCTCG
AACGCAAGAACAGATGTCCCAGGGGCACGACCCGTTGTAGGTCTAGCCCT
GATCGAACCCGCGAGGTGTTTGGAAGTCTCTTGTGTTGAGTTTTCACGCC
TCGAGGGCACCAAAAGGGGCCTCTCGCTCCAGCCGCCCTTTCGCGTGTAA
GGACTGGGGACGAAGGGCATGTTGAGCATCATTTATTGGCATTACAACAC
GACGCCTAGGCAAGATCGTGGAAACCCCCAACAAGAACACCAAAATGGCA
CACACTGGTTCCTGATCGCAGCGCAGCATTGCAGTCGCTTCCTCCTCCGA
CTACCTAGTCAGACAAGTGCCCTGGCAACAACTGCGTGGCAAATGACGAC
CAACATCATCATCACACACATCACCGACTTGGACATAATTGTGGTGCCGG
GTCTAGAAGCTCGCTGGACAACACCTCAAGCTCGAGTAGCAGACAAAGTC
AACCCTCCTCACCCCTGGAGTGCCTCTCATATATGTTTTCAAGAAAATGG
GAGTCCTTAGGAGGATCAGCAATTGCACGCGCTCTGTTGAGCCTTGACCA
TGCTACCATTACCTAACTCACGTCCTCTAACTCCACCCTTCTCCCGCCCC
AAAAGCACTCGTTTATCTACTAGCCCAATAGAACCGAGGGACGACAGTCG
CGCAGGTGCAACACACGTATCACTCGGCCCGTGGTCCTATCCAACGGAGA
TCACATTTTTAAATCATCACCGCAAGTCACCGCCATGACCCGCGCCTTCC
GCAGCGCCCGTGCCTCCTCGAACAGCAGCAGCAGCAGCAACAGCAACAGG
AGAGGTCATCCCACATGCAAAGCACCCAATGATGCGACCGGTACAGGCAG
GATGATCAACGCCAGCACTTCAGGCTCGAGTAGCACGTTGGACGCCGCCA
ACGGCCTTACTTTCCCTCGCAAGCTGGCCGAGATGCTCGAGTACGGAGAG
AACGTTATTGTGTGGTCGCAGCATGGTCTCTCCTTCTATATCTGCGATGA
GGACGCTCTAGCTCACAAACTCTTGCCCCAGTACTTTCGACGTGAGTGAA
GGAGCGGGAGGGATGGGGGCCGAGGAGGAGGAGGAGGAGGAAGGGTGTTG
AGGAGAAAGTGAATGTGTCGAGGATGGTGATGCAGCAGGTCTGGGCTTTG
TATGTGGTGCTGATCGTTGTCCTACATTTTTTAATCCTCCTCACATGGCC
TATCTGGCCTGATATCTTCGTGTTCGCACTTTCTCCTTTTTCCGTCCATT
TTTGCTCATGAGCGACCTACACACACTCATGCACACAAACATGCACACAT
ATATACCAGACAACAAAATAACCTCCTTCCAACGACAACTCAACCTCTAT
GGCTTCCGACGCATCACCAAAGGGGTCGACACAGGCGCCTATTTCCACCC
TCAGTTCCGTCGAGATCGGCCGGACCTGGTCAGTCACATTCGGCGCATGC
CAGGGCAAGGCGCGACGGCCACCGCCAAATTTCTCCCACTCTACTACAAG
GACGTACAAAATTCTGCGCCCGTCCATATCACTCCTACTAGTGATGCTGC
TGCTGCTGGGTACTCTTTCGCCGCCTTTTCCTCCTCCCTCGATAGCGACA
CCACCATGACCACTCTGGGGGGAAATAGCAGCGGCAGCAGCAGTACCACC
AGCAGCGTCAGCACCAGCTATAGTAGGAAGAGTGACCGCGCTAGGGCTAC
CAAACCTCGCCGTCGTCGTCGCGTCCGCTCGGAGTCGAGTGCCTCGAACG
TCACACACACCTCGTCCTGTTCTGATTCCTCTTTCCCTTCCCCCTCCACT
AGCTCCTACGTTGAGGAGGACGATGACGGTGAACTGTTCTTGAAGGTGGG
TGCTGAGGTGGAGGCCGGGAAGAGCGAACAGTTTTATATGGAAGATGGGG
CGTTGGATTACTATGAAAGCGACAGAAATGGAGAAGAGCATGACGAGGAC
GGGAAGGAAGAGGGG

Coding sequence (CDS) from alignment at scaffold_16:409352..411666+

>mRNA_7153 ID=mRNA_7153|Name=jgi.p|Nanoce1779_2|595798|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_16:409352..411666+ (Nannochloropsis oceanica)
ATGACCCGCGCCTTCCGCAGCGCCCGTGCCTCCTCGAACAGCAGCAGCAG
CAGCAACAGCAACAGGAGAGGTCATCCCACATGCAAAGCACCCAATGATG
CGACCGGTACAGGCAGGATGATCAACGCCAGCACTTCAGGCTCGAGTAGC
ACGTTGGACGCCGCCAACGGCCTTACTTTCCCTCGCAAGCTGGCCGAGAT
GCTCGAGTACGGAGAGAACGTTATTGTGTGGTCGCAGCATGGTCTCTCCT
TCTATATCTGCGATGAGGACGCTCTAGCTCACAAACTCTTGCCCCAGTAC
TTTCGACGTGAGTGA

Synonyms

Publications