jgi.p|Nanoce1779_2|595773, mRNA_7147 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595773
Unique NamemRNA_7147
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1200
Alignment locationscaffold_16:398792..400112 -

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Properties
Property NameValue
TranscriptId595859
TrackFilteredModels2
ProteinId595773
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:398792..400112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595773gene_7147Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595773mRNA_7147-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7147CDS_7147Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7147 ID=mRNA_7147|Name=jgi.p|Nanoce1779_2|595773|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
AGAACGTCTCCCAAGAGCACCTCCTCCTTGTCTTCGTATAGCGCCAGGGA
GGTGAGTGGTGGCATCCCAACGCGCAGGCCCCGGGCACACAGGACGCGAC
CTGGAGACCTCATCATCGCCAACTTGTTCATTCCCTTTCAGCACTTCACC
CAGCCATACACTATGTTTGACAAGCTTTGGGATGGACTGTGCCTTGCGGA
AGCCTTTGGGGCCGAGACAATGGCCGTCACGGTCTGGACCGTGTTTGTAT
GTCTGTTGCGGGCTTTGCTCTTCTCCATCCGAGTCTTTGTGTGGGTCCCA
AATGCATTAGTCTTTGCCAACCCCTTCCTCATGGAGCGCTTTCTGCAGGC
TTTCCGAAACAAGGCATCGCCGTTCTCATCGTCATTATTGTCGAGTATCA
AGAGGAATAGCAACGGCTACGCTGCTGCATGCGCCACCATTGCCGACATG
TCGTCCTCCTCTTCCTCCTCTTCCTCCACCGTCTTCCCATCCTCGTTGAC
CTGCAGGACGCGTGTGGTACCCCACTTGCCCGTCCGCATCGCCGAGAGCC
TGCTAGGACGAACGCCGTCCATTTTAGTGCTCTTACCAGCGCATTTCCTC
GGGGGGATTATGGGTGTCACAATTGTGAAACTCTTTCTCGGCCCTAGCTC
CTTCACCCAGTCTTACTCAGCGCGAGCATTGCTCCCTATTATTTATGGCG
GCAGCAATGGTGATGCGGCCCCGCTGTTACTGCTGGGCTGGTGGGTCTTT
ATCAAGGAGATCCTAGTGACGGCGCTTTATGTGGTAGGCTTACTGGTTCT
ACCTCAGGTGTTTATAATTAATCATTTGCCGAGACAGTGTACATATGCCT
GCTTGCTGCCATTACTGCTTATCCGCCTTCCCGACCAGACGCCAGCATTT
GCGCCCGCAACTCTCTTTTCGCTCTGGTTCACGAGCAGGGATACATTGCG
GGCGGTGCATGGCATGACCTCGATTCAATATGAACATGTCTTTGGGCCCA
TCTTGGGGGGGTTTCTGGCAGGCGGCGTGATGGTGGCATGCTTTCCCGAC
GATGATGTACCGCTGTAGCTGTGTACTCAGTCTTGGAGTAAAAACTAATC
AAAGAATGTAAATAATGAGCAATTGCAACAAGAAGTACATGGAACATTTT
TTGGCACACAATTATTTCAGAAGCTACTCGTTTTTTTTCGGAGACATGTT
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protein sequence of jgi.p|Nanoce1779_2|595773

>mRNA_7147-protein ID=mRNA_7147-protein|Name=jgi.p|Nanoce1779_2|595773|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MFDKLWDGLCLAEAFGAETMAVTVWTVFVCLLRALLFSIRVFVWVPNALV
FANPFLMERFLQAFRNKASPFSSSLLSSIKRNSNGYAAACATIADMSSSS
SSSSSTVFPSSLTCRTRVVPHLPVRIAESLLGRTPSILVLLPAHFLGGIM
GVTIVKLFLGPSSFTQSYSARALLPIIYGGSNGDAAPLLLLGWWVFIKEI
LVTALYVVGLLVLPQVFIINHLPRQCTYACLLPLLLIRLPDQTPAFAPAT
LFSLWFTSRDTLRAVHGMTSIQYEHVFGPILGGFLAGGVMVACFPDDDVP
L*
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mRNA from alignment at scaffold_16:398792..400112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7147 ID=mRNA_7147|Name=jgi.p|Nanoce1779_2|595773|organism=Nannochloropsis oceanica|type=mRNA|length=1321bp|location=Sequence derived from alignment at scaffold_16:398792..400112- (Nannochloropsis oceanica)
AGAACGTCTCCCAAGAGCACCTCCTCCTTGTCTTCGTATAGCGCCAGGGA
GGTGAGTGGTGGCATCCCAACGCGCAGGCCCCGGGCACACAGGACGCGAC
CTGGAGACCTCATCATCGCCAACTTGTTCATTCCCTTTCAGCACTTCACC
CAGCCATACACTATGTTTGACAAGCTTTGGGATGGACTGTGCCTTGCGGA
AGCCTTTGGGGCCGAGACAATGGCCGTCACGGTCTGGACCGTGTTTGTAT
GTCTGTTGCGGGCTTTGCTCTTCTCCATCCGAGTCTTTGTGTGGGTCCCA
AATGCATTAGTCTTTGCCAACCCCTTCCTCATGGAGCGCTTTCTGCAGGC
TTTCCGAAACAAGGCATCGCCGTTCTCATCGTCATTATTGTCGAGTATCA
AGAGGAATAGCAACGGCTACGCTGCTGCATGCGCCACCATTGCCGACATG
TCGTCCTCCTCTTCCTCCTCTTCCTCCACCGTCTTCCCATCCTCGTTGAC
CTGCAGGACGCGTGTGGTACCCCACTTGCCCGTCCGCATCGCCGAGAGCC
TGCTAGGACGAACGCCGTCCATTTTAGTGCTCTTACCAGCGCATTTCCTC
GGGGGGATTATGGGTGTCACAATTGTGAAACTCTTTCTCGGCCCTAGCTC
CTTCACCCAGTCTTACTCAGCGCGAGCATTGCTCCCTATTATTTATGGCG
GCAGCAATGGTGATGCGGCCCCGCTGTTACTGCTGGGCTGGTGGGTCTTT
ATCAAGGAGATCCTAGTGACGGCGCTTTATGTGGTAGGCTTACTGGTTCT
ACCTCAGGTGTTTATAATTAATCATTTGCCGAGACAGTGTACATATGCCT
GCTTGCTGCCATTACTGCTTATCCGCCTTCCCGACCAGACGCCAGCATTT
GCGCCCGCAACTCTCTTTTCGCTCTGGTTCACGAGCAGGGATACATTGCG
GGCGGTGCATGGCATGACCTCGATTCAATATGAACATGGTGAGTGCGTGG
GGTTGAGAGGGAACGGGTTGTGATGCAAATGGCAAGATCGGAAATAGACC
AGGATCCCTCGAGTCATCACCTTCGCTCGTTTTTTTATCTCTATTCTTCA
CATTCACAGTCTTTGGGCCCATCTTGGGGGGGTTTCTGGCAGGCGGCGTG
ATGGTGGCATGCTTTCCCGACGATGATGTACCGCTGTAGCTGTGTACTCA
GTCTTGGAGTAAAAACTAATCAAAGAATGTAAATAATGAGCAATTGCAAC
AAGAAGTACATGGAACATTTTTTGGCACACAATTATTTCAGAAGCTACTC
GTTTTTTTTCGGAGACATGTT
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Coding sequence (CDS) from alignment at scaffold_16:398792..400112-

>mRNA_7147 ID=mRNA_7147|Name=jgi.p|Nanoce1779_2|595773|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_16:398792..400112- (Nannochloropsis oceanica)
TCTTTGGGCCCATCTTGGGGGGGTTTCTGGCAGGCGGCGTGATGGTGGCA
TGCTTTCCCGACGATGATGTACCGCTGTAGATGTTTGACAAGCTTTGGGA
TGGACTGTGCCTTGCGGAAGCCTTTGGGGCCGAGACAATGGCCGTCACGG
TCTGGACCGTGTTTGTATGTCTGTTGCGGGCTTTGCTCTTCTCCATCCGA
GTCTTTGTGTGGGTCCCAAATGCATTAGTCTTTGCCAACCCCTTCCTCAT
GGAGCGCTTTCTGCAGGCTTTCCGAAACAAGGCATCGCCGTTCTCATCGT
CATTATTGTCGAGTATCAAGAGGAATAGCAACGGCTACGCTGCTGCATGC
GCCACCATTGCCGACATGTCGTCCTCCTCTTCCTCCTCTTCCTCCACCGT
CTTCCCATCCTCGTTGACCTGCAGGACGCGTGTGGTACCCCACTTGCCCG
TCCGCATCGCCGAGAGCCTGCTAGGACGAACGCCGTCCATTTTAGTGCTC
TTACCAGCGCATTTCCTCGGGGGGATTATGGGTGTCACAATTGTGAAACT
CTTTCTCGGCCCTAGCTCCTTCACCCAGTCTTACTCAGCGCGAGCATTGC
TCCCTATTATTTATGGCGGCAGCAATGGTGATGCGGCCCCGCTGTTACTG
CTGGGCTGGTGGGTCTTTATCAAGGAGATCCTAGTGACGGCGCTTTATGT
GGTAGGCTTACTGGTTCTACCTCAGGTGTTTATAATTAATCATTTGCCGA
GACAGTGTACATATGCCTGCTTGCTGCCATTACTGCTTATCCGCCTTCCC
GACCAGACGCCAGCATTTGCGCCCGCAACTCTCTTTTCGCTCTGGTTCAC
GAGCAGGGATACATTGCGGGCGGTGCATGGCATGACCTCGATTCAATATG
AACATGTCTTTGGGCCCATCTTGGGGGGGTTTCTGGCAGGCGGCGTGATG
GTGGCATGCTTTCCCGACGATGATGTACCGCTGTAGATGTTTGACAAGCT
TTGGGATGGACTGTGCCTTGCGGAAGCCTTTGGGGCCGAGACAATGGCCG
TCACGGTCTGGACCGTGTTTGTATGTCTGTTGCGGGCTTTGCTCTTCTCC
ATCCGAGTCTTTGTGTGGGTCCCAAATGCATTAGTCTTTGCCAACCCCTT
CCTCATGGAGCGCTTTCTGCAGGCTTTCCGAAACAAGGCATCGCCGTTCT
CATCGTCATTATTGTCGAGTATCAAGAGGAATAGCAACGGCTACGCTGCT
GCATGCGCCACCATTGCCGACATGTCGTCCTCCTCTTCCTCCTCTTCCTC
CACCGTCTTCCCATCCTCGTTGACCTGCAGGACGCGTGTGGTACCCCACT
TGCCCGTCCGCATCGCCGAGAGCCTGCTAGGACGAACGCCGTCCATTTTA
GTGCTCTTACCAGCGCATTTCCTCGGGGGGATTATGGGTGTCACAATTGT
GAAACTCTTTCTCGGCCCTAGCTCCTTCACCCAGTCTTACTCAGCGCGAG
CATTGCTCCCTATTATTTATGGCGGCAGCAATGGTGATGCGGCCCCGCTG
TTACTGCTGGGCTGGTGGGTCTTTATCAAGGAGATCCTAGTGACGGCGCT
TTATGTGGTAGGCTTACTGGTTCTACCTCAGGTGTTTATAATTAATCATT
TGCCGAGACAGTGTACATATGCCTGCTTGCTGCCATTACTGCTTATCCGC
CTTCCCGACCAGACGCCAGCATTTGCGCCCGCAACTCTCTTTTCGCTCTG
GTTCACGAGCAGGGATACATTGCGGGCGGTGCATGGCATGACCTCGATTC
AATATGAACATG
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Synonyms
Publications