jgi.p|Nanoce1779_2|595763, mRNA_7145 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595763
Unique NamemRNA_7145
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length899
Alignment locationscaffold_16:395048..396125 +

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Properties
Property NameValue
TranscriptId595849
TrackFilteredModels2
ProteinId595763
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:395048..396125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595763gene_7145Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595763mRNA_7145-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7145CDS_7145Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7145 ID=mRNA_7145|Name=jgi.p|Nanoce1779_2|595763|organism=Nannochloropsis oceanica|type=mRNA|length=899bp
TAGGTGGCTTTGCTTGCTGACACGCGTATCAAGGCTCTTCTCTTCGAGGG
GGGGGGAGGTGCAGCAGCAGCAGCAGCAACAGCAGGAGCATTACAAGTAT
GTCCGTGGAGCACTGGGAAGAAGAGTTGAAAAAAAGGGTACGGGAGCTAC
AGGACCATCTGGCAAACCTCAGGGTGTCCGAGGAGAGCACCACGACTGCG
GCTTTGCAAAAGCGCAAATTGATTGATGCTTGCGAACGCCGATTGGAAGA
GGTGCGGGAGGCCCGTAAGAACTGTGACCGGGCCGTGCGGATTTTGAAGG
ACCCGACAAAGCGTAATGATGGGAAAAAGATGCTGCGCGGGGTGGATAAG
CGCGTTCGGCATTGTCAGGATGAGGTGCGTCGCATAGAGCTAAAAATCAA
ATACTCCGATTCGCACAGCGTGCATATAGACCATGAGACGGCGGATGACG
AGTACAAAAAAGAGATTGATCGCATGCAGGGTGGGATGAAAGAAAGCTAT
GCCCGTCAATTGGAGACGCTGGACCGAACGTTGGAGGTGGCGAGCAAGGC
GAAAGACAATGTGGAGGCGCAGGGACAGCAGGTTCGTTCCCTTGCCAACG
AGACGGCGCGCATTGGGAATGGGTTGGACCGAGCTGACTTTATGGTGCGC
CGGTTTAAGCGCCAGGTGTCCTCGGATCGGATATGTAAGGTTTTAGTGGT
AGGTAATGTGTTGATACTCATCGTGCTGGTGACATTGGTGGTCCTTAATA
GTAAGCCAATTCTTCGTACCATTGGGCTGTAAGGGAGGGAGAAAGCGGAA
GGAGGGAGGGAGGGAGCTGAAGAAGGGAAGGAGGGAGGGAAGTGGGAGAC
AAGGAGCGAAAAGTGTGGATAAGCTGGTAAATAATGTATCATGCCGACG
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protein sequence of jgi.p|Nanoce1779_2|595763

>mRNA_7145-protein ID=mRNA_7145-protein|Name=jgi.p|Nanoce1779_2|595763|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MSVEHWEEELKKRVRELQDHLANLRVSEESTTTAALQKRKLIDACERRLE
EVREARKNCDRAVRILKDPTKRNDGKKMLRGVDKRVRHCQDEVRRIELKI
KYSDSHSVHIDHETADDEYKKEIDRMQGGMKESYARQLETLDRTLEVASK
AKDNVEAQGQQVRSLANETARIGNGLDRADFMVRRFKRQVSSDRICKVLV
VGNVLILIVLVTLVVLNSKPILRTIGL*
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mRNA from alignment at scaffold_16:395048..396125+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7145 ID=mRNA_7145|Name=jgi.p|Nanoce1779_2|595763|organism=Nannochloropsis oceanica|type=mRNA|length=1078bp|location=Sequence derived from alignment at scaffold_16:395048..396125+ (Nannochloropsis oceanica)
TAGGTGGCTTTGCTTGCTGACACGCGTATCAAGGCTCTTCTCTTCGAGGG
GGGGGGAGGTGCAGCAGCAGCAGCAGCAACAGCAGGAGCATTACAAGTAT
GTCCGTGGAGCACTGGTACGTTTCGGTGGAGGAACGCGAGGCGAGGTGTA
CAAAATGATGAGGACGGTGGTACACTGGTAAAGTGGCTTGCCATGACGGG
TGGATTTTTATCTCCGTTGACCGGATGACATGCATCTCACTCCTCTTGCA
CACTTTCCCCACACATCCTTCCAACCATTATCTTCGCACAACAGGGAAGA
AGAGTTGAAAAAAAGGGTACGGGAGCTACAGGACCATCTGGCAAACCTCA
GGGTGTCCGAGGAGAGCACCACGACTGCGGCTTTGCAAAAGCGCAAATTG
ATTGATGCTTGCGAACGCCGATTGGAAGAGGTGCGGGAGGCCCGTAAGAA
CTGTGACCGGGCCGTGCGGATTTTGAAGGACCCGACAAAGCGTAATGATG
GGAAAAAGATGCTGCGCGGGGTGGATAAGCGCGTTCGGCATTGTCAGGAT
GAGGTGCGTCGCATAGAGCTAAAAATCAAATACTCCGATTCGCACAGCGT
GCATATAGACCATGAGACGGCGGATGACGAGTACAAAAAAGAGATTGATC
GCATGCAGGGTGGGATGAAAGAAAGCTATGCCCGTCAATTGGAGACGCTG
GACCGAACGTTGGAGGTGGCGAGCAAGGCGAAAGACAATGTGGAGGCGCA
GGGACAGCAGGTTCGTTCCCTTGCCAACGAGACGGCGCGCATTGGGAATG
GGTTGGACCGAGCTGACTTTATGGTGCGCCGGTTTAAGCGCCAGGTGTCC
TCGGATCGGATATGTAAGGTTTTAGTGGTAGGTAATGTGTTGATACTCAT
CGTGCTGGTGACATTGGTGGTCCTTAATAGTAAGCCAATTCTTCGTACCA
TTGGGCTGTAAGGGAGGGAGAAAGCGGAAGGAGGGAGGGAGGGAGCTGAA
GAAGGGAAGGAGGGAGGGAAGTGGGAGACAAGGAGCGAAAAGTGTGGATA
AGCTGGTAAATAATGTATCATGCCGACG
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Coding sequence (CDS) from alignment at scaffold_16:395048..396125+

>mRNA_7145 ID=mRNA_7145|Name=jgi.p|Nanoce1779_2|595763|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_16:395048..396125+ (Nannochloropsis oceanica)
ATGTCCGTGGAGCACTGGGAAGAAGAGTTGAAAAAAAGGGTACGGGAGCT
ACAGGACCATCTGGCAAACCTCAGGGTGTCCGAGGAGAGCACCACGACTG
CGGCTTTGCAAAAGCGCAAATTGATTGATGCTTGCGAACGCCGATTGGAA
GAGGTGCGGGAGGCCCGTAAGAACTGTGACCGGGCCGTGCGGATTTTGAA
GGACCCGACAAAGCGTAATGATGGGAAAAAGATGCTGCGCGGGGTGGATA
AGCGCGTTCGGCATTGTCAGGATGAGGTGCGTCGCATAGAGCTAAAAATC
AAATACTCCGATTCGCACAGCGTGCATATAGACCATGAGACGGCGGATGA
CGAGTACAAAAAAGAGATTGATCGCATGCAGGGTGGGATGAAAGAAAGCT
ATGCCCGTCAATTGGAGACGCTGGACCGAACGTTGGAGGTGGCGAGCAAG
GCGAAAGACAATGTGGAGGCGCAGGGACAGCAGGTTCGTTCCCTTGCCAA
CGAGACGGCGCGCATTGGGAATGGGTTGGACCGAGCTGACTTTATGGTGC
GCCGGTTTAAGCGCCAGGTGTCCTCGGATCGGATATGTAAGGTTTTAGTG
GTAGGTAATGTGTTGATACTCATCGTGCTGGTGACATTGGTGGTCCTTAA
TAGTAAGCCAATTCTTCGTACCATTGGGCTGTAAATGTCCGTGGAGCACT
GGGAAGAAGAGTTGAAAAAAAGGGTACGGGAGCTACAGGACCATCTGGCA
AACCTCAGGGTGTCCGAGGAGAGCACCACGACTGCGGCTTTGCAAAAGCG
CAAATTGATTGATGCTTGCGAACGCCGATTGGAAGAGGTGCGGGAGGCCC
GTAAGAACTGTGACCGGGCCGTGCGGATTTTGAAGGACCCGACAAAGCGT
AATGATGGGAAAAAGATGCTGCGCGGGGTGGATAAGCGCGTTCGGCATTG
TCAGGATGAGGTGCGTCGCATAGAGCTAAAAATCAAATACTCCGATTCGC
ACAGCGTGCATATAGACCATGAGACGGCGGATGACGAGTACAAAAAAGAG
ATTGATCGCATGCAGGGTGGGATGAAAGAAAGCTATGCCCGTCAATTGGA
GACGCTGGACCGAACGTTGGAGGTGGCGAGCAAGGCGAAAGACAATGTGG
AGGCGCAGGGACAGCAGGTTCGTTCCCTTGCCAACGAGACGGCGCGCATT
GGGAATGGGTTGGACCGAGCTGACTTTATGGTGCGCCGGTTTAAGCGCCA
GGTGTCCTCGGATCGGATATGTAAGGTTTTAGTGGTAGGTAATGTGTTGA
TACTCATCGTGCTGGTGACATTGGTGGTCCTTAATAGTAAGCCAATTCTT
CGTACCATTGGGCTGTAA
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Synonyms
Publications