jgi.p|Nanoce1779_2|104562, mRNA_7143 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|104562
Unique Name	mRNA_7143
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3174
Alignment location	scaffold_16:386115..389288 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	104648
Track	FilteredModels2
ProteinId	104562

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:386115..389288 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|104562	gene_7143	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|104562	mRNA_7143-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7143	CDS_7143	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:386115..389288-
coding sequence from alignment at scaffold_16:386115..389288-

mRNA sequence

>mRNA_7143 ID=mRNA_7143|Name=jgi.p|Nanoce1779_2|104562|organism=Nannochloropsis oceanica|type=mRNA|length=3174bp
AGAAATCGAGGGAAGAGGAGGAAGTAGAGACAACTTTGCAGCCTGCTCCC
GAGGCCACTGCAAAGAAAGAGGACTACGGGGGCAAAGGGGAAGGGGAGGA
GGCAGGGAGGGTCACACCTATCCTTAAAGTACAATATGAAGCAGGAGATG
TAGCAGTCGCTCCTCCCATGCCTGCGGCTGCTCAAAGCCTTCAACCTCCT
CGTGCTTCTGCTGCTTCTCCTGTTGCATCCATCACGATGGGTAACGGCAC
TCCTGTACTGATCTACCCACCGCAGCAACAGCGAGAGGAGAAGGAAGGGG
GAGAGGAGCAGCTGCAGCAGCAGCAGGCCGGGACGGCAGAGATGTTTCGC
GCGATAGTGGCGGAGGGAGGGGAGGAAGGAAATGAGGAGGTGGACGGGAC
GTCCGCTAAGAAGGGGCATCGTGGCGACACCGATGTGGAGTCTGAGAAGG
AGAAGGAGGAGGGGGGGGGAGGAGGAAGACCAGCAGCAGCAGCGGCAGCC
GCAACACCAAGTGGAGCAGGAAGACGTGGTACTTGTCGTGCCCACGAAAA
ATGCTAAGGCTGCTGCCGAGGAGGAGGAAACGACAGAAGAAGAGAAAGGG
CAAGCGCCCTCTGCTCCTGTCTCCTATCCTTCCCGCGGAGGTGGAGAAAT
AAGGAAGAGCGAAATACCTGCCCGAGCAGCAGTAGCAGCAGCAGCGACCC
CCGCTACTGTCGGCAAGGATGAGAAGAAAAAGGCAGTAGCGACGGCGACA
GCGGGAGCATCACTAGCAGCGGCAGCAGAATCCACGCTCAATATTGCGGA
AAAGACGAAGGTTGGGAAGAAGCGGGAGCAACAGGAAGAGGGGGAGGAGG
GGACGGAGGAGCAGGACGTGCAGGTCGAACAGCCCAAATCTGCGAAGAAG
AAGGCAGCGACGCCGAAAGAAAAAACAGGAGCAGCGGTGGGAAGACAAGG
CGACCTAAGGGAAGTGCCCCCACCGAAAGCTATGGACAAGATGAAGGAGG
GGAAGAAGAAGCAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAAGAAATGGAGGAGACAGAAGCTAAGCCTGCTATTGCTACATC
CCGGCAGCTGGACCGTGCAGCAGCAGCAGCAGCAGCAGGAGCGGCCAAAA
CAGTGATTGATCAGGAGACGACTTCGCCCTCCGCCGTTCCCTTTCATTAT
AAAAAGAAGCGCAAGGCGGAGGAAATTGAGACCGGGAAGGAGGAAGAGAA
AGCTTCCGTGCGCCGTCGTAGCCGCACTGGGGCTACTCCTGCTGCACCTC
GCGCTGCTGCAGCCGTAAGCAAGGGAAAAGATAAGACAAAGGTGGGAGGT
GTGACAGGGAGCTCAAGGGCAGGAGGAGGATCATGGGTAGCGCAGAGTGC
CGCTGCTTGGAAGGTGGCAATGACATGCGTGGAAGCGGACGCGGAGACGA
AGCGACGGATCAAGAGCCTTGGGTTCTCCCTCGTAGACGAATTGCGGGAG
GCCGACATTTTGATCGCCGGGGATCGAGCTTCTGGAGTGGCTGCTCGACG
CACGGCAAAGGTGATGGGTGCTGTGTGCTCAGGCTTGCCACTGGTGGATG
TCTCATGGTTGCAGGCCTCGATAAAGAAGGGGCAGGCCGCAGACACACGC
GCGGAGGAGTTCATCCCTGATTACCTTCCTCCCCGACATAAAGTTGCCGT
GAAGCTGTCCGCTGGTACTGCCGTGGTAGGCGCTGCTGACGCAGCACCTT
TCTTGAAGGACTGGACTGTCTTGGCTGCCTTCAAGAGTTTTGGGAGTGGG
GGTGTCCCGCCCAAGGCCGACTTACGTCTGATTGTTGAGTGTGCCGGAGG
TGCTTTCTATGACAAACCGTCGGAGTTTGAGGCAGGGCAGAGGAAGAAGG
GAGGAAGAAAGGGAAATATTTTGATTTTATCAAACGAGGCGAATCTGGGT
CTGAAAACATGGGGGATGGAGGTGCGGGAATTTGCGAGTAAGCATAAGGA
GATGGTGGGAGGGGGAGACGGGGAGGTCTATGGCTTGGAGGTGTTGCTGG
CGGGGGCGATGCAGCAGAAGTTGAGTTTGGAAAGTCATATATTGTGGAAG
GCGGGGGAGACGGAGAAAGGGAAGGAGGAAGCACAGGAGGAGGAAGTAAC
CCAGAAGGTGGGAAGAAAGAAGGGGGCGGCAGCTCCGGTGGTCGAGGCGA
AGGGGAAGGGGAAGTCAAAGGTAGCAGTTGCTCCGGCGATCGAGGCGAAG
GGGAGCACGGGAAAAGTACAGAAAGCGGTGGCAGCAGGAAAGAAGAGGGA
AGTGGCGGAAGAGGAAGAAGAGGAAGAGGAGGAGGAGGTAGGGGGGAAGG
CCTCTCCTGCGGCGAAGAACGGAAGGGCCACGGCTTCTACGGCAGCTGTC
GAGAGAAAAGGTGCCACTTCGGATGCTGCCTCATCGATGCGCACCACCAG
GGCGAAAGCAGCAGATGTGTCTGCCGTCCCTGCTGCTACCATGTCCAAGC
CCAAGCCAATTGCGGCCAGCATCACCATCAAAGGCAAGAAGGCATGTCCT
ATTCCTTCCAAGAAGCCACAGACCACGTCACCTGCTGTCGGGAAGAAGCG
CGAGGCGGCTTCAGCTCTTGCGTCTGCTCCGGCAGGAAAGCGTTCGACAA
GAGCCCAATCCGCGAAGTAAGCACACATAGACTCATGGCCAAAGCCATGT
TTAGACATTCAGCGACAAAAGGAGTCCAATAGGCCTGTGCCAAAAACTAC
TCAAAAGTTCACAATGTGTGAGACGACAGACAAGCAGAAGATTGGGAAAA
TTCGATGCCACGAAAAGGAAGGCTGACGGTTAATCAATTAATTCAAGAGT
GAGGTAGAAAAGGAGGAAGGAGGGGCCCTGCTCTGCCCTGTGTATGTACG
TGTAGGTGTGTGTGCGGCGTGCGCGTGCTTTCGCACGGAGGAAATGAATA
GCTCAAGAATGAAGAATGATAAGAATATAAAATACTGTGATACCGACAAG
GAGCAAAGGGGAATGGAAAATACACGAAAGAGCAAAAATCCGAGGGGAGA
GGGAGGGTCAAGGGAGAGGAGCGATGAAAAGGCTGACCATGGAGCGACAG
GTTTAAAACTTCTCAGGAGAATGGAGAAAATTATGTGGGAATGACGAGTC
TCTCATTCGGTAGACTCATTTGCT

protein sequence of jgi.p|Nanoce1779_2|104562

>mRNA_7143-protein ID=mRNA_7143-protein|Name=jgi.p|Nanoce1779_2|104562|organism=Nannochloropsis oceanica|type=polypeptide|length=763bp
MRRWTGRPLRRGIVATPMWSLRRRRRRGGEEEDQQQQRQPQHQVEQEDVV
LVVPTKNAKAAAEEEETTEEEKGQAPSAPVSYPSRGGGEIRKSEIPARAA
VAAAATPATVGKDEKKKAVATATAGASLAAAAESTLNIAEKTKVGKKREQ
QEEGEEGTEEQDVQVEQPKSAKKKAATPKEKTGAAVGRQGDLREVPPPKA
MDKMKEGKKKQEKEEEEEEEEEEEEEEMEETEAKPAIATSRQLDRAAAAA
AAGAAKTVIDQETTSPSAVPFHYKKKRKAEEIETGKEEEKASVRRRSRTG
ATPAAPRAAAAVSKGKDKTKVGGVTGSSRAGGGSWVAQSAAAWKVAMTCV
EADAETKRRIKSLGFSLVDELREADILIAGDRASGVAARRTAKVMGAVCS
GLPLVDVSWLQASIKKGQAADTRAEEFIPDYLPPRHKVAVKLSAGTAVVG
AADAAPFLKDWTVLAAFKSFGSGGVPPKADLRLIVECAGGAFYDKPSEFE
AGQRKKGGRKGNILILSNEANLGLKTWGMEVREFASKHKEMVGGGDGEVY
GLEVLLAGAMQQKLSLESHILWKAGETEKGKEEAQEEEVTQKVGRKKGAA
APVVEAKGKGKSKVAVAPAIEAKGSTGKVQKAVAAGKKREVAEEEEEEEE
EEVGGKASPAAKNGRATASTAAVERKGATSDAASSMRTTRAKAADVSAVP
AATMSKPKPIAASITIKGKKACPIPSKKPQTTSPAVGKKREAASALASAP
AGKRSTRAQSAK*

mRNA from alignment at scaffold_16:386115..389288-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7143 ID=mRNA_7143|Name=jgi.p|Nanoce1779_2|104562|organism=Nannochloropsis oceanica|type=mRNA|length=3174bp|location=Sequence derived from alignment at scaffold_16:386115..389288- (Nannochloropsis oceanica)
AGAAATCGAGGGAAGAGGAGGAAGTAGAGACAACTTTGCAGCCTGCTCCC
GAGGCCACTGCAAAGAAAGAGGACTACGGGGGCAAAGGGGAAGGGGAGGA
GGCAGGGAGGGTCACACCTATCCTTAAAGTACAATATGAAGCAGGAGATG
TAGCAGTCGCTCCTCCCATGCCTGCGGCTGCTCAAAGCCTTCAACCTCCT
CGTGCTTCTGCTGCTTCTCCTGTTGCATCCATCACGATGGGTAACGGCAC
TCCTGTACTGATCTACCCACCGCAGCAACAGCGAGAGGAGAAGGAAGGGG
GAGAGGAGCAGCTGCAGCAGCAGCAGGCCGGGACGGCAGAGATGTTTCGC
GCGATAGTGGCGGAGGGAGGGGAGGAAGGAAATGAGGAGGTGGACGGGAC
GTCCGCTAAGAAGGGGCATCGTGGCGACACCGATGTGGAGTCTGAGAAGG
AGAAGGAGGAGGGGGGGGGAGGAGGAAGACCAGCAGCAGCAGCGGCAGCC
GCAACACCAAGTGGAGCAGGAAGACGTGGTACTTGTCGTGCCCACGAAAA
ATGCTAAGGCTGCTGCCGAGGAGGAGGAAACGACAGAAGAAGAGAAAGGG
CAAGCGCCCTCTGCTCCTGTCTCCTATCCTTCCCGCGGAGGTGGAGAAAT
AAGGAAGAGCGAAATACCTGCCCGAGCAGCAGTAGCAGCAGCAGCGACCC
CCGCTACTGTCGGCAAGGATGAGAAGAAAAAGGCAGTAGCGACGGCGACA
GCGGGAGCATCACTAGCAGCGGCAGCAGAATCCACGCTCAATATTGCGGA
AAAGACGAAGGTTGGGAAGAAGCGGGAGCAACAGGAAGAGGGGGAGGAGG
GGACGGAGGAGCAGGACGTGCAGGTCGAACAGCCCAAATCTGCGAAGAAG
AAGGCAGCGACGCCGAAAGAAAAAACAGGAGCAGCGGTGGGAAGACAAGG
CGACCTAAGGGAAGTGCCCCCACCGAAAGCTATGGACAAGATGAAGGAGG
GGAAGAAGAAGCAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAAGAAATGGAGGAGACAGAAGCTAAGCCTGCTATTGCTACATC
CCGGCAGCTGGACCGTGCAGCAGCAGCAGCAGCAGCAGGAGCGGCCAAAA
CAGTGATTGATCAGGAGACGACTTCGCCCTCCGCCGTTCCCTTTCATTAT
AAAAAGAAGCGCAAGGCGGAGGAAATTGAGACCGGGAAGGAGGAAGAGAA
AGCTTCCGTGCGCCGTCGTAGCCGCACTGGGGCTACTCCTGCTGCACCTC
GCGCTGCTGCAGCCGTAAGCAAGGGAAAAGATAAGACAAAGGTGGGAGGT
GTGACAGGGAGCTCAAGGGCAGGAGGAGGATCATGGGTAGCGCAGAGTGC
CGCTGCTTGGAAGGTGGCAATGACATGCGTGGAAGCGGACGCGGAGACGA
AGCGACGGATCAAGAGCCTTGGGTTCTCCCTCGTAGACGAATTGCGGGAG
GCCGACATTTTGATCGCCGGGGATCGAGCTTCTGGAGTGGCTGCTCGACG
CACGGCAAAGGTGATGGGTGCTGTGTGCTCAGGCTTGCCACTGGTGGATG
TCTCATGGTTGCAGGCCTCGATAAAGAAGGGGCAGGCCGCAGACACACGC
GCGGAGGAGTTCATCCCTGATTACCTTCCTCCCCGACATAAAGTTGCCGT
GAAGCTGTCCGCTGGTACTGCCGTGGTAGGCGCTGCTGACGCAGCACCTT
TCTTGAAGGACTGGACTGTCTTGGCTGCCTTCAAGAGTTTTGGGAGTGGG
GGTGTCCCGCCCAAGGCCGACTTACGTCTGATTGTTGAGTGTGCCGGAGG
TGCTTTCTATGACAAACCGTCGGAGTTTGAGGCAGGGCAGAGGAAGAAGG
GAGGAAGAAAGGGAAATATTTTGATTTTATCAAACGAGGCGAATCTGGGT
CTGAAAACATGGGGGATGGAGGTGCGGGAATTTGCGAGTAAGCATAAGGA
GATGGTGGGAGGGGGAGACGGGGAGGTCTATGGCTTGGAGGTGTTGCTGG
CGGGGGCGATGCAGCAGAAGTTGAGTTTGGAAAGTCATATATTGTGGAAG
GCGGGGGAGACGGAGAAAGGGAAGGAGGAAGCACAGGAGGAGGAAGTAAC
CCAGAAGGTGGGAAGAAAGAAGGGGGCGGCAGCTCCGGTGGTCGAGGCGA
AGGGGAAGGGGAAGTCAAAGGTAGCAGTTGCTCCGGCGATCGAGGCGAAG
GGGAGCACGGGAAAAGTACAGAAAGCGGTGGCAGCAGGAAAGAAGAGGGA
AGTGGCGGAAGAGGAAGAAGAGGAAGAGGAGGAGGAGGTAGGGGGGAAGG
CCTCTCCTGCGGCGAAGAACGGAAGGGCCACGGCTTCTACGGCAGCTGTC
GAGAGAAAAGGTGCCACTTCGGATGCTGCCTCATCGATGCGCACCACCAG
GGCGAAAGCAGCAGATGTGTCTGCCGTCCCTGCTGCTACCATGTCCAAGC
CCAAGCCAATTGCGGCCAGCATCACCATCAAAGGCAAGAAGGCATGTCCT
ATTCCTTCCAAGAAGCCACAGACCACGTCACCTGCTGTCGGGAAGAAGCG
CGAGGCGGCTTCAGCTCTTGCGTCTGCTCCGGCAGGAAAGCGTTCGACAA
GAGCCCAATCCGCGAAGTAAGCACACATAGACTCATGGCCAAAGCCATGT
TTAGACATTCAGCGACAAAAGGAGTCCAATAGGCCTGTGCCAAAAACTAC
TCAAAAGTTCACAATGTGTGAGACGACAGACAAGCAGAAGATTGGGAAAA
TTCGATGCCACGAAAAGGAAGGCTGACGGTTAATCAATTAATTCAAGAGT
GAGGTAGAAAAGGAGGAAGGAGGGGCCCTGCTCTGCCCTGTGTATGTACG
TGTAGGTGTGTGTGCGGCGTGCGCGTGCTTTCGCACGGAGGAAATGAATA
GCTCAAGAATGAAGAATGATAAGAATATAAAATACTGTGATACCGACAAG
GAGCAAAGGGGAATGGAAAATACACGAAAGAGCAAAAATCCGAGGGGAGA
GGGAGGGTCAAGGGAGAGGAGCGATGAAAAGGCTGACCATGGAGCGACAG
GTTTAAAACTTCTCAGGAGAATGGAGAAAATTATGTGGGAATGACGAGTC
TCTCATTCGGTAGACTCATTTGCT

Coding sequence (CDS) from alignment at scaffold_16:386115..389288-

>mRNA_7143 ID=mRNA_7143|Name=jgi.p|Nanoce1779_2|104562|organism=Nannochloropsis oceanica|type=CDS|length=2289bp|location=Sequence derived from alignment at scaffold_16:386115..389288- (Nannochloropsis oceanica)
ATGAGGAGGTGGACGGGACGTCCGCTAAGAAGGGGCATCGTGGCGACACC
GATGTGGAGTCTGAGAAGGAGAAGGAGGAGGGGGGGGGAGGAGGAAGACC
AGCAGCAGCAGCGGCAGCCGCAACACCAAGTGGAGCAGGAAGACGTGGTA
CTTGTCGTGCCCACGAAAAATGCTAAGGCTGCTGCCGAGGAGGAGGAAAC
GACAGAAGAAGAGAAAGGGCAAGCGCCCTCTGCTCCTGTCTCCTATCCTT
CCCGCGGAGGTGGAGAAATAAGGAAGAGCGAAATACCTGCCCGAGCAGCA
GTAGCAGCAGCAGCGACCCCCGCTACTGTCGGCAAGGATGAGAAGAAAAA
GGCAGTAGCGACGGCGACAGCGGGAGCATCACTAGCAGCGGCAGCAGAAT
CCACGCTCAATATTGCGGAAAAGACGAAGGTTGGGAAGAAGCGGGAGCAA
CAGGAAGAGGGGGAGGAGGGGACGGAGGAGCAGGACGTGCAGGTCGAACA
GCCCAAATCTGCGAAGAAGAAGGCAGCGACGCCGAAAGAAAAAACAGGAG
CAGCGGTGGGAAGACAAGGCGACCTAAGGGAAGTGCCCCCACCGAAAGCT
ATGGACAAGATGAAGGAGGGGAAGAAGAAGCAGGAGAAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAATGGAGGAGACAGAAGCTA
AGCCTGCTATTGCTACATCCCGGCAGCTGGACCGTGCAGCAGCAGCAGCA
GCAGCAGGAGCGGCCAAAACAGTGATTGATCAGGAGACGACTTCGCCCTC
CGCCGTTCCCTTTCATTATAAAAAGAAGCGCAAGGCGGAGGAAATTGAGA
CCGGGAAGGAGGAAGAGAAAGCTTCCGTGCGCCGTCGTAGCCGCACTGGG
GCTACTCCTGCTGCACCTCGCGCTGCTGCAGCCGTAAGCAAGGGAAAAGA
TAAGACAAAGGTGGGAGGTGTGACAGGGAGCTCAAGGGCAGGAGGAGGAT
CATGGGTAGCGCAGAGTGCCGCTGCTTGGAAGGTGGCAATGACATGCGTG
GAAGCGGACGCGGAGACGAAGCGACGGATCAAGAGCCTTGGGTTCTCCCT
CGTAGACGAATTGCGGGAGGCCGACATTTTGATCGCCGGGGATCGAGCTT
CTGGAGTGGCTGCTCGACGCACGGCAAAGGTGATGGGTGCTGTGTGCTCA
GGCTTGCCACTGGTGGATGTCTCATGGTTGCAGGCCTCGATAAAGAAGGG
GCAGGCCGCAGACACACGCGCGGAGGAGTTCATCCCTGATTACCTTCCTC
CCCGACATAAAGTTGCCGTGAAGCTGTCCGCTGGTACTGCCGTGGTAGGC
GCTGCTGACGCAGCACCTTTCTTGAAGGACTGGACTGTCTTGGCTGCCTT
CAAGAGTTTTGGGAGTGGGGGTGTCCCGCCCAAGGCCGACTTACGTCTGA
TTGTTGAGTGTGCCGGAGGTGCTTTCTATGACAAACCGTCGGAGTTTGAG
GCAGGGCAGAGGAAGAAGGGAGGAAGAAAGGGAAATATTTTGATTTTATC
AAACGAGGCGAATCTGGGTCTGAAAACATGGGGGATGGAGGTGCGGGAAT
TTGCGAGTAAGCATAAGGAGATGGTGGGAGGGGGAGACGGGGAGGTCTAT
GGCTTGGAGGTGTTGCTGGCGGGGGCGATGCAGCAGAAGTTGAGTTTGGA
AAGTCATATATTGTGGAAGGCGGGGGAGACGGAGAAAGGGAAGGAGGAAG
CACAGGAGGAGGAAGTAACCCAGAAGGTGGGAAGAAAGAAGGGGGCGGCA
GCTCCGGTGGTCGAGGCGAAGGGGAAGGGGAAGTCAAAGGTAGCAGTTGC
TCCGGCGATCGAGGCGAAGGGGAGCACGGGAAAAGTACAGAAAGCGGTGG
CAGCAGGAAAGAAGAGGGAAGTGGCGGAAGAGGAAGAAGAGGAAGAGGAG
GAGGAGGTAGGGGGGAAGGCCTCTCCTGCGGCGAAGAACGGAAGGGCCAC
GGCTTCTACGGCAGCTGTCGAGAGAAAAGGTGCCACTTCGGATGCTGCCT
CATCGATGCGCACCACCAGGGCGAAAGCAGCAGATGTGTCTGCCGTCCCT
GCTGCTACCATGTCCAAGCCCAAGCCAATTGCGGCCAGCATCACCATCAA
AGGCAAGAAGGCATGTCCTATTCCTTCCAAGAAGCCACAGACCACGTCAC
CTGCTGTCGGGAAGAAGCGCGAGGCGGCTTCAGCTCTTGCGTCTGCTCCG
GCAGGAAAGCGTTCGACAAGAGCCCAATCCGCGAAGTAA

Synonyms

Publications