jgi.p|Nanoce1779_2|595746, mRNA_7142 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595746
Unique NamemRNA_7142
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1041
Alignment locationscaffold_16:384840..385880 -

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Properties
Property NameValue
TranscriptId595832
TrackFilteredModels2
ProteinId595746
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:384840..385880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595746gene_7142Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595746mRNA_7142-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7142CDS_7142Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7142 ID=mRNA_7142|Name=jgi.p|Nanoce1779_2|595746|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp
CAGCACACAGGCAGCCAGCCACACAAATCCCAGCGCTGCGGCGAACAGGA
GTCTCAGAATGCCCCTCTTTGACGCCGCGTTCATCGAGCGGGGGGCGTGC
GGCGTGGAGCGGAAAAGCAAGCGGGAGGAACGGCTCGTGAATAAGGATCG
ACTATGCTGCGGAAGGCCTCAGTACGTTGGCCGCATGATATTATTGTGCG
GGCACAAGGACAGTAGGTTTCCCCTCCACTGCCTGGTGGGACCAGACTGG
CCCTGCATGCTCATCACGTATGCCTTGGTGAGCGCACCCACCATCTCGTT
CCTTATATTGATTGCCGCCCGCATAAGCTGGATCATTGTCATGTTGGGCC
TTGTATCCTTCACCCTCACTCTCATCTTTTTCAGCCTGACTGCCTGCTCC
GACCCCGGCATCGTCTACCGGCAGCTCCAGGAAGAGACGCTAGAAGACTC
CGAAGCCGGGGCGGCACAAAGTCATGCCAACGTTACAATTAGCAACAGCG
ATATCAGAGGCGCTCCATTGACTGCAGCGGCCGGTGCGGGCACATCCACC
GCGCTAAACCCAACAGCGCAAATCCCTTGCTCGCGATGCGAACTGTCCCG
GCCTGTGGGTGCCTCGCACTGTTACGATTGCGAGGTGTGCGTGACCGACT
TGGATCATCACTGCCCTTGGACGGGTAAGTGTATTGGGAAGAAAAATGTA
TATTTCTTCTATTCTTTTTTGACGTTTTTGACAATTCACATTATTTTTGT
TGGCTGCGTGACTGGAATGAGCGCTTTAAATGACGCATTTCATTTGGATG
GCGGGAATCCATGACAAGATAGAGAAAAAATATCGGACGAGTAGGTAGGT
AGTGATAAGAATTAAAACAACAAAGTAAATGCAACAACAAATACGAGAGT
GCTTTGATGCATACACGCTCCGAAGTCTTTTTTATTTACATATGCAGTAA
ACCTGTACAGCAGGAGTCCCATAACGATGACGAGAAAGAAATGAAGTATT
ATGATGAAGCATGAAAAGTCGGAAGTACGCAGATGGAAACA
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protein sequence of jgi.p|Nanoce1779_2|595746

>mRNA_7142-protein ID=mRNA_7142-protein|Name=jgi.p|Nanoce1779_2|595746|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MPLFDAAFIERGACGVERKSKREERLVNKDRLCCGRPQYVGRMILLCGHK
DSRFPLHCLVGPDWPCMLITYALVSAPTISFLILIAARISWIIVMLGLVS
FTLTLIFFSLTACSDPGIVYRQLQEETLEDSEAGAAQSHANVTISNSDIR
GAPLTAAAGAGTSTALNPTAQIPCSRCELSRPVGASHCYDCEVCVTDLDH
HCPWTGKCIGKKNVYFFYSFLTFLTIHIIFVGCVTGMSALNDAFHLDGGN
P*
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mRNA from alignment at scaffold_16:384840..385880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7142 ID=mRNA_7142|Name=jgi.p|Nanoce1779_2|595746|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp|location=Sequence derived from alignment at scaffold_16:384840..385880- (Nannochloropsis oceanica)
CAGCACACAGGCAGCCAGCCACACAAATCCCAGCGCTGCGGCGAACAGGA
GTCTCAGAATGCCCCTCTTTGACGCCGCGTTCATCGAGCGGGGGGCGTGC
GGCGTGGAGCGGAAAAGCAAGCGGGAGGAACGGCTCGTGAATAAGGATCG
ACTATGCTGCGGAAGGCCTCAGTACGTTGGCCGCATGATATTATTGTGCG
GGCACAAGGACAGTAGGTTTCCCCTCCACTGCCTGGTGGGACCAGACTGG
CCCTGCATGCTCATCACGTATGCCTTGGTGAGCGCACCCACCATCTCGTT
CCTTATATTGATTGCCGCCCGCATAAGCTGGATCATTGTCATGTTGGGCC
TTGTATCCTTCACCCTCACTCTCATCTTTTTCAGCCTGACTGCCTGCTCC
GACCCCGGCATCGTCTACCGGCAGCTCCAGGAAGAGACGCTAGAAGACTC
CGAAGCCGGGGCGGCACAAAGTCATGCCAACGTTACAATTAGCAACAGCG
ATATCAGAGGCGCTCCATTGACTGCAGCGGCCGGTGCGGGCACATCCACC
GCGCTAAACCCAACAGCGCAAATCCCTTGCTCGCGATGCGAACTGTCCCG
GCCTGTGGGTGCCTCGCACTGTTACGATTGCGAGGTGTGCGTGACCGACT
TGGATCATCACTGCCCTTGGACGGGTAAGTGTATTGGGAAGAAAAATGTA
TATTTCTTCTATTCTTTTTTGACGTTTTTGACAATTCACATTATTTTTGT
TGGCTGCGTGACTGGAATGAGCGCTTTAAATGACGCATTTCATTTGGATG
GCGGGAATCCATGACAAGATAGAGAAAAAATATCGGACGAGTAGGTAGGT
AGTGATAAGAATTAAAACAACAAAGTAAATGCAACAACAAATACGAGAGT
GCTTTGATGCATACACGCTCCGAAGTCTTTTTTATTTACATATGCAGTAA
ACCTGTACAGCAGGAGTCCCATAACGATGACGAGAAAGAAATGAAGTATT
ATGATGAAGCATGAAAAGTCGGAAGTACGCAGATGGAAACA
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Coding sequence (CDS) from alignment at scaffold_16:384840..385880-

>mRNA_7142 ID=mRNA_7142|Name=jgi.p|Nanoce1779_2|595746|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_16:384840..385880- (Nannochloropsis oceanica)
ATGCCCCTCTTTGACGCCGCGTTCATCGAGCGGGGGGCGTGCGGCGTGGA
GCGGAAAAGCAAGCGGGAGGAACGGCTCGTGAATAAGGATCGACTATGCT
GCGGAAGGCCTCAGTACGTTGGCCGCATGATATTATTGTGCGGGCACAAG
GACAGTAGGTTTCCCCTCCACTGCCTGGTGGGACCAGACTGGCCCTGCAT
GCTCATCACGTATGCCTTGGTGAGCGCACCCACCATCTCGTTCCTTATAT
TGATTGCCGCCCGCATAAGCTGGATCATTGTCATGTTGGGCCTTGTATCC
TTCACCCTCACTCTCATCTTTTTCAGCCTGACTGCCTGCTCCGACCCCGG
CATCGTCTACCGGCAGCTCCAGGAAGAGACGCTAGAAGACTCCGAAGCCG
GGGCGGCACAAAGTCATGCCAACGTTACAATTAGCAACAGCGATATCAGA
GGCGCTCCATTGACTGCAGCGGCCGGTGCGGGCACATCCACCGCGCTAAA
CCCAACAGCGCAAATCCCTTGCTCGCGATGCGAACTGTCCCGGCCTGTGG
GTGCCTCGCACTGTTACGATTGCGAGGTGTGCGTGACCGACTTGGATCAT
CACTGCCCTTGGACGGGTAAGTGTATTGGGAAGAAAAATGTATATTTCTT
CTATTCTTTTTTGACGTTTTTGACAATTCACATTATTTTTGTTGGCTGCG
TGACTGGAATGAGCGCTTTAAATGACGCATTTCATTTGGATGGCGGGAAT
CCATGA
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Synonyms
Publications