jgi.p|Nanoce1779_2|595739, mRNA_7140 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595739
Unique NamemRNA_7140
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length434
Alignment locationscaffold_16:382910..383343 -

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Properties
Property NameValue
TranscriptId595825
TrackFilteredModels2
ProteinId595739
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:382910..383343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595739gene_7140Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595739mRNA_7140-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7140CDS_7140Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7140 ID=mRNA_7140|Name=jgi.p|Nanoce1779_2|595739|organism=Nannochloropsis oceanica|type=mRNA|length=434bp
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGATGTTTGTCCGCTGTCCCTTTTTGCTTCTTGACAGCCTGTC
GCCCACCCCGGCGGACGCGTTTCACTTGTTCTCCCACCACGTTGATGTAG
TCTTTCTTGACGGGAACAGAACGACGATCACTTCGCCGGGTCGCTTGCAA
GGAGGTTGTCATGGCATCGGCGGCAGTGGTAGAGGTGGAGGAGACGGGAT
CGTTGTCGTTGTTGTCGTTGGGCAGAGGGGGCTCCATAGAAACAAGAGGA
TAAAGTTACAAACTTGGATTTAACATGCCTGCAAAGGGGGATGACAGGAG
GGATGAGTGGCCGTGAAGAGAACCCAGGGGGAAAACAAGGTGGAGAGATG
TGGGCCTTGCCGCTGTCTTCGGCGCGAAAAAAGG
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protein sequence of jgi.p|Nanoce1779_2|595739

>mRNA_7140-protein ID=mRNA_7140-protein|Name=jgi.p|Nanoce1779_2|595739|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MFVRCPFLLLDSLSPTPADAFHLFSHHVDVVFLDGNRTTITSPGRLQGGC
HGIGGSGRGGGDGIVVVVVVGQRGLHRNKRIKLQTWI*
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mRNA from alignment at scaffold_16:382910..383343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7140 ID=mRNA_7140|Name=jgi.p|Nanoce1779_2|595739|organism=Nannochloropsis oceanica|type=mRNA|length=434bp|location=Sequence derived from alignment at scaffold_16:382910..383343- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG CTGCTGCTGATGTTTGTCCGCTGTCCCTTTTTGCTTCTTGACAGCCTGTC GCCCACCCCGGCGGACGCGTTTCACTTGTTCTCCCACCACGTTGATGTAG TCTTTCTTGACGGGAACAGAACGACGATCACTTCGCCGGGTCGCTTGCAA GGAGGTTGTCATGGCATCGGCGGCAGTGGTAGAGGTGGAGGAGACGGGAT CGTTGTCGTTGTTGTCGTTGGGCAGAGGGGGCTCCATAGAAACAAGAGGA TAAAGTTACAAACTTGGATTTAACATGCCTGCAAAGGGGGATGACAGGAG GGATGAGTGGCCGTGAAGAGAACCCAGGGGGAAAACAAGGTGGAGAGATG TGGGCCTTGCCGCTGTCTTCGGCGCGAAAAAAGG
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Coding sequence (CDS) from alignment at scaffold_16:382910..383343-

>mRNA_7140 ID=mRNA_7140|Name=jgi.p|Nanoce1779_2|595739|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_16:382910..383343- (Nannochloropsis oceanica)
ATGTTTGTCCGCTGTCCCTTTTTGCTTCTTGACAGCCTGTCGCCCACCCC
GGCGGACGCGTTTCACTTGTTCTCCCACCACGTTGATGTAGTCTTTCTTG
ACGGGAACAGAACGACGATCACTTCGCCGGGTCGCTTGCAAGGAGGTTGT
CATGGCATCGGCGGCAGTGGTAGAGGTGGAGGAGACGGGATCGTTGTCGT
TGTTGTCGTTGGGCAGAGGGGGCTCCATAGAAACAAGAGGATAAAGTTAC
AAACTTGGATTTAA
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Synonyms
Publications