jgi.p|Nanoce1779_2|104453, mRNA_7137 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|104453
Unique NamemRNA_7137
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length688
Alignment locationscaffold_16:380679..381417 +

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Properties
Property NameValue
TranscriptId104539
TrackFilteredModels2
ProteinId104453
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:380679..381417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|104453gene_7137Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|104453mRNA_7137-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7137CDS_7137Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7137 ID=mRNA_7137|Name=jgi.p|Nanoce1779_2|104453|organism=Nannochloropsis oceanica|type=mRNA|length=688bp
GTCCACGTGCTTCTCACTCGCTGGCTCCTCCTTTCAGCCTGGGCATACGC
CTTCCCATTTTGGAAAATTGCCGCCTTGAGGCTTCGAGACAAGGTGCACA
AACACGCACTTACACGCCCATCACCTTTCACCTTCTGTTTCTCTCTCTCC
TCCCTTGATGTTCTTTCTCCTTGACCCGGTGCGTGTCTTGATGGTCTTCC
TCCCGCGCTCTTTTTTTTTAAACTTTCTCTCTTTGTTGTTATTCTTTGTG
CCTCCTTACTGTGACAAGCTTTCTTTTTTTGGAGCACCAGCAAGAGCAAG
ACTTAGAGCTATCCCAGCATTTACTTACACATATTCTCTCCCCCCCCCTT
TCTTTCCCTCTCTTTGTCTCTCTCATTCTCCCTCTCCCACACACACACTC
ATGTCGGTTCTCGACTCTCGCCCTCCATTACCTCTTCACACGCACATAGA
CAGCGGCCTTACACTACTAATGCATGCATGCATGTGTCCGGCTTCTTGGT
CTTCCTTTCATGGTGTTTATCATTATATATATATATCTTACTGCTGCGAA
AAGTAGGCACACAGGGAAAAGGTAGACAAAGGCAAACAAGCGGACACATA
AGAATGAGGCCGCTGCTCCTGCAACTACTGCTGCCTGCTGCTCCACCTTA
CTTGGTCTTGGCGCCCTTGGTCTTGGTGATGAGAGATT
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protein sequence of jgi.p|Nanoce1779_2|104453

>mRNA_7137-protein ID=mRNA_7137-protein|Name=jgi.p|Nanoce1779_2|104453|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MFFLLDPVRVLMVFLPRSFFLNFLSLLLFFVPPYCDKLSFFGAPARARLR
AIPAFTYTYSLPPPFFPSLCLSHSPSPTHTLMSVLDSRPPLPLHTHIDSG
LTLLMHACMCPASWSSFHGVYHYIYISYCCEK*
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mRNA from alignment at scaffold_16:380679..381417+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7137 ID=mRNA_7137|Name=jgi.p|Nanoce1779_2|104453|organism=Nannochloropsis oceanica|type=mRNA|length=739bp|location=Sequence derived from alignment at scaffold_16:380679..381417+ (Nannochloropsis oceanica)
GTCCACGTGCTTCTCACTCGCTGGCTCCTCCTTTCAGCCTGGGCATACGC
CTTCCCATTTTGGAAAATTGCCGCCTTGAGGCTTCGAGACAAGGTGCACA
AACACGCACTTACACGCCCATCACCTTTCACCTTCTGTTTCTCTCTCTCC
TCCCTTGATGTTCTTTCTCCTTGACCCGGTGCGTGTCTTGATGGTCTTCC
TCCCGCGCTCTTTTTTTTTAAACTTTCTCTCTTTGTTGTTATTCTTTGTG
CCTCCTTACTGTGACAAGCTTTCTTTTTTTGGAGTGTTTTGAGTAGGGAT
GCGACAAGCGCATTCTCATTCCTGTCACCCAGAGGCACCAGCAAGAGCAA
GACTTAGAGCTATCCCAGCATTTACTTACACATATTCTCTCCCCCCCCCT
TTCTTTCCCTCTCTTTGTCTCTCTCATTCTCCCTCTCCCACACACACACT
CATGTCGGTTCTCGACTCTCGCCCTCCATTACCTCTTCACACGCACATAG
ACAGCGGCCTTACACTACTAATGCATGCATGCATGTGTCCGGCTTCTTGG
TCTTCCTTTCATGGTGTTTATCATTATATATATATATCTTACTGCTGCGA
AAAGTAGGCACACAGGGAAAAGGTAGACAAAGGCAAACAAGCGGACACAT
AAGAATGAGGCCGCTGCTCCTGCAACTACTGCTGCCTGCTGCTCCACCTT
ACTTGGTCTTGGCGCCCTTGGTCTTGGTGATGAGAGATT
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Coding sequence (CDS) from alignment at scaffold_16:380679..381417+

>mRNA_7137 ID=mRNA_7137|Name=jgi.p|Nanoce1779_2|104453|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_16:380679..381417+ (Nannochloropsis oceanica)
ATGTTCTTTCTCCTTGACCCGGTGCGTGTCTTGATGGTCTTCCTCCCGCG
CTCTTTTTTTTTAAACTTTCTCTCTTTGTTGTTATTCTTTGTGCCTCCTT
ACTGTGACAAGCTTTCTTTTTTTGGAGCACCAGCAAGAGCAAGACTTAGA
GCTATCCCAGCATTTACTTACACATATTCTCTCCCCCCCCCTTTCTTTCC
CTCTCTTTGTCTCTCTCATTCTCCCTCTCCCACACACACACTCATGTCGG
TTCTCGACTCTCGCCCTCCATTACCTCTTCACACGCACATAGACAGCGGC
CTTACACTACTAATGCATGCATGCATGTGTCCGGCTTCTTGGTCTTCCTT
TCATGGTGTTTATCATTATATATATATATCTTACTGCTGCGAAAAGTAGA
TGTTCTTTCTCCTTGACCCGGTGCGTGTCTTGATGGTCTTCCTCCCGCGC
TCTTTTTTTTTAAACTTTCTCTCTTTGTTGTTATTCTTTGTGCCTCCTTA
CTGTGACAAGCTTTCTTTTTTTGGAGCACCAGCAAGAGCAAGACTTAGAG
CTATCCCAGCATTTACTTACACATATTCTCTCCCCCCCCCTTTCTTTCCC
TCTCTTTGTCTCTCTCATTCTCCCTCTCCCACACACACACTCATGTCGGT
TCTCGACTCTCGCCCTCCATTACCTCTTCACACGCACATAGACAGCGGCC
TTACACTACTAATGCATGCATGCATGTGTCCGGCTTCTTGGTCTTCCTTT
CATGGTGTTTATCATTATATATATATATCTTACTGCTGCGAAAAGTAG
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Synonyms
Publications