jgi.p|Nanoce1779_2|595734, mRNA_7136 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595734
Unique NamemRNA_7136
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length920
Alignment locationscaffold_16:379285..380648 +

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Properties
Property NameValue
TranscriptId595820
TrackFilteredModels2
ProteinId595734
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:379285..380648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595734gene_7136Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595734mRNA_7136-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7136CDS_7136Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7136 ID=mRNA_7136|Name=jgi.p|Nanoce1779_2|595734|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
ACAGAGCCCGACCAGATACCATGCCTGTCTTTTCAGCCCGAAGTCTTGTG
CTGCTTGCCATGCTCCTTTCGACGTGCTATGCGTTTTTGCTGCCTGGCGT
GCCCAAGTTGGCAAAAACAGTAGTGAATGTTGGAGAGGGTAGCACTCACG
TGAAGGAGCTAGCGCCCCTGAACCCGGAGGACTACATTGCCGTTGGCTTG
GCTATGTGCTACAAGATCAACAGCGGAGGCAAGCTCGATGAGGCGTTGGT
GATGGAACCTCTCACGGCCGGCACTCTCGAATGCCTGGCACTGGGCGTGC
CCACGTCCTACAAGCGTGTGATCGGCTTGACCTGCGCGGATTTGTTCCTC
GGAGAGGATTTGCGGGCACCGGAGGGGATTAACATCGAGGCTTTGCGGGC
GCTTGCTAAGGGGGAGACTGTGTCGGAGTGCGAGAACATGCTGATTCGAT
CAATGGCGGCGGCACGTACTTTCAAGCGTCGCGTAGAGGCGCAGATCATT
CCTTTGGGTGAAGTAGCGGATGATTTCAATTTTAACACGGAGAAAAAGCG
GGTGCTGAATCAGGTGTTCGAACCCTCCTTCGACGACAATGTCAAGCAAG
ACAAGAGCATCGACGTCTATGGCCGTGCTGACGAGGATTTTAATGACGAG
GTCTCCAAACTTGCCAACGCCTAACCTCAAAGAAAGGCAAGGACATTTTT
GAACAGAAAAAGGAGGGAGGAGAGAAGGGCAGGAGAGGGCCCAGTGTTAT
TCCTAGACGACGAAGAGGAAGGGCGCGTTTACCGATCCACTAAAAGAATG
AGAACCGGCCCACCAGAAATAGGCAGCCATGAAAGATTTAAAAAAGACAA
GAGTCTGCAAAGATGTCGGTGGATCTACTCAAGCTAGTGGGGGGTCGCAA
ATTATTTCACTTTTTTGGGG
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protein sequence of jgi.p|Nanoce1779_2|595734

>mRNA_7136-protein ID=mRNA_7136-protein|Name=jgi.p|Nanoce1779_2|595734|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MPVFSARSLVLLAMLLSTCYAFLLPGVPKLAKTVVNVGEGSTHVKELAPL
NPEDYIAVGLAMCYKINSGGKLDEALVMEPLTAGTLECLALGVPTSYKRV
IGLTCADLFLGEDLRAPEGINIEALRALAKGETVSECENMLIRSMAAART
FKRRVEAQIIPLGEVADDFNFNTEKKRVLNQVFEPSFDDNVKQDKSIDVY
GRADEDFNDEVSKLANA*
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mRNA from alignment at scaffold_16:379285..380648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7136 ID=mRNA_7136|Name=jgi.p|Nanoce1779_2|595734|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp|location=Sequence derived from alignment at scaffold_16:379285..380648+ (Nannochloropsis oceanica)
ACAGAGCCCGACCAGATACCATGCCTGTCTTTTCAGCCCGAAGTCTTGTG
CTGCTTGCCATGCTCCTTTCGACGTGCTATGCGTTTTTGCTGCCTGGCGT
GCCCAAGTAAGTTGGTTGTTGTTTGTTGGAACAAGGACGACGGGGTTGAA
GCGAAGTCAAGACAACATGACCCCGGGGGCTCACCTCTCTTCCCCCCAAC
CCTTCACAGGTTGGCAAAAACAGTAGTGAATGTTGGAGAGGGTAGCACTC
ACGTGAAGGAGCTAGCGGTAAGTTTACATGACTGAGATGCCGGCTGAATG
GGCGCAGTCTTTCAAAACGATTTCTGGATATTTTTTCACCGCCTTCACCC
TCCTATCCACCCGCTCAGCCCCTGAACCCGGAGGACTACATTGCCGTTGG
CTTGGCTATGTGCTACAAGATCAACAGCGGAGGCAAGCTCGATGGTAGGT
GTCCTCGGTTTCCCTTCGTGTCTCTGTCTCGTCCTGTCTCCGAAATGGAC
AAGGCCCCAGCTGTCGCATTCTGGGTAGACGCTACACTCCTCTACAGCTG
GGCTGTTCCTGGTGGCGAAGACAAATTGCATGCAAACAAATGTGGCCTAA
TACGTTCATCACCGACCAAGAGCCCTCATCCCCCCTTTTCTGACACCTCT
TTTCTCTTCCCAACCTCTCCTCCCTTCCCCACAGAGGCGTTGGTGATGGA
ACCTCTCACGGCCGGCACTCTCGAATGCCTGGCACTGGGCGTGCCCACGT
CCTACAAGCGTGTGATCGGCTTGACCTGCGCGGATTTGTTCCTCGGAGAG
GATTTGCGGGCACCGGAGGGGATTAACATCGAGGCTTTGCGGGCGCTTGC
TAAGGGGGAGACTGTGTCGGAGTGCGAGAACATGCTGATTCGATCAATGG
CGGCGGCACGTACTTTCAAGCGTCGCGTAGAGGCGCAGATCATTCCTTTG
GGTGAAGTAGCGGATGATTTCAATTTTAACACGGAGAAAAAGCGGGTGCT
GAATCAGGTGTTCGAACCCTCCTTCGACGACAATGTCAAGCAAGACAAGA
GCATCGACGTCTATGGCCGTGCTGACGAGGATTTTAATGACGAGGTCTCC
AAACTTGCCAACGCCTAACCTCAAAGAAAGGCAAGGACATTTTTGAACAG
AAAAAGGAGGGAGGAGAGAAGGGCAGGAGAGGGCCCAGTGTTATTCCTAG
ACGACGAAGAGGAAGGGCGCGTTTACCGATCCACTAAAAGAATGAGAACC
GGCCCACCAGAAATAGGCAGCCATGAAAGATTTAAAAAAGACAAGAGTCT
GCAAAGATGTCGGTGGATCTACTCAAGCTAGTGGGGGGTCGCAAATTATT
TCACTTTTTTGGGG
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Coding sequence (CDS) from alignment at scaffold_16:379285..380648+

>mRNA_7136 ID=mRNA_7136|Name=jgi.p|Nanoce1779_2|595734|organism=Nannochloropsis oceanica|type=CDS|length=2616bp|location=Sequence derived from alignment at scaffold_16:379285..380648+ (Nannochloropsis oceanica)
ATGCCTGTCTTTTCAGCCCGAAGTCTTGTGCTGCTTGCCATGCTCCTTTC
GACGTGCTATGCGTTTTTGCTGCCTGGCGTGCCCAAGTTGGCAAAAACAG
TAGTGAATGTTGGAGAGGGTAGCACTCACGTGAAGGAGCTAGCGCCCCTG
AACCCGGAGGACTACATTGCCGTTGGCTTGGCTATGTGCTACAAGATCAA
CAGCGGAGGCAAGCTCGATGAGGCGTTGGTGATGGAACCTCTCACGGCCG
GCACTCTCGAATGCCTGGCACTGGGCGTGCCCACGTCCTACAAGCGTGTG
ATCGGCTTGACCTGCGCGGATTTGTTCCTCGGAGAGGATTTGCGGGCACC
GGAGGGGATTAACATCGAGGCTTTGCGGGCGCTTGCTAAGGGGGAGACTG
TGTCGGAGTGCGAGAACATGCTGATTCGATCAATGGCGGCGGCACGTACT
TTCAAGCGTCGCGTAGAGGCGCAGATCATTCCTTTGGGTGAAGTAGCGGA
TGATTTCAATTTTAACACGGAGAAAAAGCGGGTGCTGAATCAGGTGTTCG
AACCCTCCTTCGACGACAATGTCAAGCAAGACAAGAGCATCGACGTCTAT
GGCCGTGCTGACGAGGATTTTAATGACGAGGTCTCCAAACTTGCCAACGC
CTAAATGCCTGTCTTTTCAGCCCGAAGTCTTGTGCTGCTTGCCATGCTCC
TTTCGACGTGCTATGCGTTTTTGCTGCCTGGCGTGCCCAAGTTGGCAAAA
ACAGTAGTGAATGTTGGAGAGGGTAGCACTCACGTGAAGGAGCTAGCGCC
CCTGAACCCGGAGGACTACATTGCCGTTGGCTTGGCTATGTGCTACAAGA
TCAACAGCGGAGGCAAGCTCGATGAGGCGTTGGTGATGGAACCTCTCACG
GCCGGCACTCTCGAATGCCTGGCACTGGGCGTGCCCACGTCCTACAAGCG
TGTGATCGGCTTGACCTGCGCGGATTTGTTCCTCGGAGAGGATTTGCGGG
CACCGGAGGGGATTAACATCGAGGCTTTGCGGGCGCTTGCTAAGGGGGAG
ACTGTGTCGGAGTGCGAGAACATGCTGATTCGATCAATGGCGGCGGCACG
TACTTTCAAGCGTCGCGTAGAGGCGCAGATCATTCCTTTGGGTGAAGTAG
CGGATGATTTCAATTTTAACACGGAGAAAAAGCGGGTGCTGAATCAGGTG
TTCGAACCCTCCTTCGACGACAATGTCAAGCAAGACAAGAGCATCGACGT
CTATGGCCGTGCTGACGAGGATTTTAATGACGAGGTCTCCAAACTTGCCA
ACGCCTAAATGCCTGTCTTTTCAGCCCGAAGTCTTGTGCTGCTTGCCATG
CTCCTTTCGACGTGCTATGCGTTTTTGCTGCCTGGCGTGCCCAAGTTGGC
AAAAACAGTAGTGAATGTTGGAGAGGGTAGCACTCACGTGAAGGAGCTAG
CGCCCCTGAACCCGGAGGACTACATTGCCGTTGGCTTGGCTATGTGCTAC
AAGATCAACAGCGGAGGCAAGCTCGATGAGGCGTTGGTGATGGAACCTCT
CACGGCCGGCACTCTCGAATGCCTGGCACTGGGCGTGCCCACGTCCTACA
AGCGTGTGATCGGCTTGACCTGCGCGGATTTGTTCCTCGGAGAGGATTTG
CGGGCACCGGAGGGGATTAACATCGAGGCTTTGCGGGCGCTTGCTAAGGG
GGAGACTGTGTCGGAGTGCGAGAACATGCTGATTCGATCAATGGCGGCGG
CACGTACTTTCAAGCGTCGCGTAGAGGCGCAGATCATTCCTTTGGGTGAA
GTAGCGGATGATTTCAATTTTAACACGGAGAAAAAGCGGGTGCTGAATCA
GGTGTTCGAACCCTCCTTCGACGACAATGTCAAGCAAGACAAGAGCATCG
ACGTCTATGGCCGTGCTGACGAGGATTTTAATGACGAGGTCTCCAAACTT
GCCAACGCCTAAATGCCTGTCTTTTCAGCCCGAAGTCTTGTGCTGCTTGC
CATGCTCCTTTCGACGTGCTATGCGTTTTTGCTGCCTGGCGTGCCCAAGT
TGGCAAAAACAGTAGTGAATGTTGGAGAGGGTAGCACTCACGTGAAGGAG
CTAGCGCCCCTGAACCCGGAGGACTACATTGCCGTTGGCTTGGCTATGTG
CTACAAGATCAACAGCGGAGGCAAGCTCGATGAGGCGTTGGTGATGGAAC
CTCTCACGGCCGGCACTCTCGAATGCCTGGCACTGGGCGTGCCCACGTCC
TACAAGCGTGTGATCGGCTTGACCTGCGCGGATTTGTTCCTCGGAGAGGA
TTTGCGGGCACCGGAGGGGATTAACATCGAGGCTTTGCGGGCGCTTGCTA
AGGGGGAGACTGTGTCGGAGTGCGAGAACATGCTGATTCGATCAATGGCG
GCGGCACGTACTTTCAAGCGTCGCGTAGAGGCGCAGATCATTCCTTTGGG
TGAAGTAGCGGATGATTTCAATTTTAACACGGAGAAAAAGCGGGTGCTGA
ATCAGGTGTTCGAACCCTCCTTCGACGACAATGTCAAGCAAGACAAGAGC
ATCGACGTCTATGGCCGTGCTGACGAGGATTTTAATGACGAGGTCTCCAA
ACTTGCCAACGCCTAA
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Synonyms
Publications