jgi.p|Nanoce1779_2|595728, mRNA_7134 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595728
Unique NamemRNA_7134
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1262
Alignment locationscaffold_16:375319..376580 +

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Properties
Property NameValue
TranscriptId595814
TrackFilteredModels2
ProteinId595728
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:375319..376580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595728gene_7134Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595728mRNA_7134-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7134CDS_7134Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7134 ID=mRNA_7134|Name=jgi.p|Nanoce1779_2|595728|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp
TTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCTTCCTCCTCCTCCTCCTCCTCTGCTTCCTTATCTACCCCCTCCGCCA
ATGAGGCATTTGACAAGAAGAAGGATGCACTGAAGAGGACGCTGCGCCGA
GAATATGCATCCTTTTTTGCGCCGATGGAGAAGCAAATGTACCGACCGGA
CGTGCAGTTTGTGGACCCGCTCACGAGTTTGAGCGGTGTGGATTCCTACC
AAAAGAATGTTGATATGCTGGGCTCACGCACCGCTTTGGGCAAGCTCCTC
TTTAGCGATGCGGGAATCGTGCTGCACAACATTAAGGACTTGGGACCTCG
GAAGATATCTACGCGATGGACCCTGCGCCTGCGTGCGAAAATGCTGCCGT
GGGGCCCAATGGCACGCTTCACGGGAGTCTCTCTCTACGACCTTGATGAA
GAAGCGCGGGTAATCAAGCAGACTGACTACTGGGACAGCATCAACCTGGT
AGGAGGCGAGTATAAGCAGGCCCCGTTATTGACGGGCGTCAAGGACTTCC
TGAACCAGCTCGGGCCGGGCGCGGGCGGGGCCCAACAAGCCATGAATGCT
GAGCTGCCTTTCGAGCTCTTGCGGCGGGCGCCTGAGTACGAGGTGCGGAG
ATACCCAGCCTTTGAGGGCGTAGAGACCGACTATGAGGCTCGCCCAGAAG
GTTATGACCGTCTAGGTACCTACGTATCGGGCTGGAATGTGGAGAATCGG
AAGGTGCGGCCGTTCAGCCCGTCCATTATGCGAATCGACTTGAACGAGAA
GGACAAGACAATGGTCTGGCCCGTGGGTTTTAGCAACGAGGCCCTTGCCC
AATCAGGCGGGGCGGCCTCCCAGCAGGCCATCCCTGCCCCTGCTGACGAG
ATCATCCGTCGCACGAGCGTCCCCACGCAGGTCGTGGCTGTGCTGCGGTT
CGAGACGCCTGCCACGGCGCCTGTGGTTAAGTATTATTCGGGAAGATTGA
TGGAACTCCTAGCGGCTGATAAGCTGGTACCCACGGAGGCTGCCACTCAG
GCCTACACCCTTTGCCAGTATGATGCTATATTTTCCGTAGGCACGAGGCG
CAATGAGGTGTGGGCTGTACTAGAAAAGCACGACTGGCAAGATTAGCTGG
CTAGTATTAGGTCGTAAAAGATGCTTATGTGAGGCTCTGGAAAGAAAAGA
ACAATACTTCGTTATGTAATAAAATCAACCCACTTCTTAGAAAGCATCGT
TGCTTCCTCGTC
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protein sequence of jgi.p|Nanoce1779_2|595728

>mRNA_7134-protein ID=mRNA_7134-protein|Name=jgi.p|Nanoce1779_2|595728|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MEKQMYRPDVQFVDPLTSLSGVDSYQKNVDMLGSRTALGKLLFSDAGIVL
HNIKDLGPRKISTRWTLRLRAKMLPWGPMARFTGVSLYDLDEEARVIKQT
DYWDSINLVGGEYKQAPLLTGVKDFLNQLGPGAGGAQQAMNAELPFELLR
RAPEYEVRRYPAFEGVETDYEARPEGYDRLGTYVSGWNVENRKVRPFSPS
IMRIDLNEKDKTMVWPVGFSNEALAQSGGAASQQAIPAPADEIIRRTSVP
TQVVAVLRFETPATAPVVKYYSGRLMELLAADKLVPTEAATQAYTLCQYD
AIFSVGTRRNEVWAVLEKHDWQD*
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mRNA from alignment at scaffold_16:375319..376580+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7134 ID=mRNA_7134|Name=jgi.p|Nanoce1779_2|595728|organism=Nannochloropsis oceanica|type=mRNA|length=1262bp|location=Sequence derived from alignment at scaffold_16:375319..376580+ (Nannochloropsis oceanica)
TTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCTTCCTCCTCCTCCTCCTCCTCTGCTTCCTTATCTACCCCCTCCGCCA
ATGAGGCATTTGACAAGAAGAAGGATGCACTGAAGAGGACGCTGCGCCGA
GAATATGCATCCTTTTTTGCGCCGATGGAGAAGCAAATGTACCGACCGGA
CGTGCAGTTTGTGGACCCGCTCACGAGTTTGAGCGGTGTGGATTCCTACC
AAAAGAATGTTGATATGCTGGGCTCACGCACCGCTTTGGGCAAGCTCCTC
TTTAGCGATGCGGGAATCGTGCTGCACAACATTAAGGACTTGGGACCTCG
GAAGATATCTACGCGATGGACCCTGCGCCTGCGTGCGAAAATGCTGCCGT
GGGGCCCAATGGCACGCTTCACGGGAGTCTCTCTCTACGACCTTGATGAA
GAAGCGCGGGTAATCAAGCAGACTGACTACTGGGACAGCATCAACCTGGT
AGGAGGCGAGTATAAGCAGGCCCCGTTATTGACGGGCGTCAAGGACTTCC
TGAACCAGCTCGGGCCGGGCGCGGGCGGGGCCCAACAAGCCATGAATGCT
GAGCTGCCTTTCGAGCTCTTGCGGCGGGCGCCTGAGTACGAGGTGCGGAG
ATACCCAGCCTTTGAGGGCGTAGAGACCGACTATGAGGCTCGCCCAGAAG
GTTATGACCGTCTAGGTACCTACGTATCGGGCTGGAATGTGGAGAATCGG
AAGGTGCGGCCGTTCAGCCCGTCCATTATGCGAATCGACTTGAACGAGAA
GGACAAGACAATGGTCTGGCCCGTGGGTTTTAGCAACGAGGCCCTTGCCC
AATCAGGCGGGGCGGCCTCCCAGCAGGCCATCCCTGCCCCTGCTGACGAG
ATCATCCGTCGCACGAGCGTCCCCACGCAGGTCGTGGCTGTGCTGCGGTT
CGAGACGCCTGCCACGGCGCCTGTGGTTAAGTATTATTCGGGAAGATTGA
TGGAACTCCTAGCGGCTGATAAGCTGGTACCCACGGAGGCTGCCACTCAG
GCCTACACCCTTTGCCAGTATGATGCTATATTTTCCGTAGGCACGAGGCG
CAATGAGGTGTGGGCTGTACTAGAAAAGCACGACTGGCAAGATTAGCTGG
CTAGTATTAGGTCGTAAAAGATGCTTATGTGAGGCTCTGGAAAGAAAAGA
ACAATACTTCGTTATGTAATAAAATCAACCCACTTCTTAGAAAGCATCGT
TGCTTCCTCGTC
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Coding sequence (CDS) from alignment at scaffold_16:375319..376580+

>mRNA_7134 ID=mRNA_7134|Name=jgi.p|Nanoce1779_2|595728|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_16:375319..376580+ (Nannochloropsis oceanica)
ATGGAGAAGCAAATGTACCGACCGGACGTGCAGTTTGTGGACCCGCTCAC
GAGTTTGAGCGGTGTGGATTCCTACCAAAAGAATGTTGATATGCTGGGCT
CACGCACCGCTTTGGGCAAGCTCCTCTTTAGCGATGCGGGAATCGTGCTG
CACAACATTAAGGACTTGGGACCTCGGAAGATATCTACGCGATGGACCCT
GCGCCTGCGTGCGAAAATGCTGCCGTGGGGCCCAATGGCACGCTTCACGG
GAGTCTCTCTCTACGACCTTGATGAAGAAGCGCGGGTAATCAAGCAGACT
GACTACTGGGACAGCATCAACCTGGTAGGAGGCGAGTATAAGCAGGCCCC
GTTATTGACGGGCGTCAAGGACTTCCTGAACCAGCTCGGGCCGGGCGCGG
GCGGGGCCCAACAAGCCATGAATGCTGAGCTGCCTTTCGAGCTCTTGCGG
CGGGCGCCTGAGTACGAGGTGCGGAGATACCCAGCCTTTGAGGGCGTAGA
GACCGACTATGAGGCTCGCCCAGAAGGTTATGACCGTCTAGGTACCTACG
TATCGGGCTGGAATGTGGAGAATCGGAAGGTGCGGCCGTTCAGCCCGTCC
ATTATGCGAATCGACTTGAACGAGAAGGACAAGACAATGGTCTGGCCCGT
GGGTTTTAGCAACGAGGCCCTTGCCCAATCAGGCGGGGCGGCCTCCCAGC
AGGCCATCCCTGCCCCTGCTGACGAGATCATCCGTCGCACGAGCGTCCCC
ACGCAGGTCGTGGCTGTGCTGCGGTTCGAGACGCCTGCCACGGCGCCTGT
GGTTAAGTATTATTCGGGAAGATTGATGGAACTCCTAGCGGCTGATAAGC
TGGTACCCACGGAGGCTGCCACTCAGGCCTACACCCTTTGCCAGTATGAT
GCTATATTTTCCGTAGGCACGAGGCGCAATGAGGTGTGGGCTGTACTAGA
AAAGCACGACTGGCAAGATTAG
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Synonyms
Publications