jgi.p|Nanoce1779_2|595725, mRNA_7133 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595725
Unique NamemRNA_7133
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1516
Alignment locationscaffold_16:373392..375021 -

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Properties
Property NameValue
TranscriptId595811
TrackFilteredModels2
ProteinId595725
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:373392..375021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595725gene_7133Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595725mRNA_7133-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7133CDS_7133Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7133 ID=mRNA_7133|Name=jgi.p|Nanoce1779_2|595725|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp
TTGAAATATCAGTGCAGCTGGCAACACCAGCCAGTCGCGGTTGATTCTGG
TACGCCACCGTAAGCCTTCGCCGCCTCCTTGCTGCGTCCGACTACCCTCC
ACCGCATACTCTCAGGTGCCACTCCAACGGGTTTCTTTTATGACTACCCT
CCACCGCATACTCTCATGTGCCACTCCAACGGGTTTCTTTTATGACTACC
CTCCACCGCAAACTCTCAGGTGCCACTCCAACGGGTTTCTTTTATGGATG
CCTTGGTCGATATCTTCCTCAAAGCTTGCCCGCAGTCACTGCAACAGCCT
TCACCAGACCACCAGCCGTCCACCATCACGACCCTCCCAAACCTCACTCC
TCTCGTCACACTCCGCAAGGCCGCTGTGCTGCTTCCCTTGTTCGAGCACA
TCGAGGATGGCCGAATCCATTGCTTGCTGACAGTCCGGCCTGAGCACATG
CGCTCGCATGCAGGCGAAGTATGCTTCCCCGGAGGCAAAGTCGAAGCAGG
GGAAACTGTGGTCCAAACTGCCATGAGAGAAGCTATGGAGGAAATTGGCT
TGGCGCCCGAGGCTGTCCGAGTAGTGGGCAAGATGACACCAACCCTTTCT
CTCCACCTTCTTGAAGTCACGCCTGTTGTTGCCATCATCCCGGCTGATTT
CGTGCCCCAACCCAACCCTGAGGAAGTGGCCGAGGTATTTTCGTGCCCGC
TCGACCTCTTTCTGTCACCGTCACCGGGCCAGCACTCGTTTCAAGACTTG
ACGTGGTTTACAGATTGGCGAATGCACACGTTCCGACATGGCGAACAGTG
GAATGTGTGGGGTTTGACGGCCGAGACCCTAGTCCGGCTGGCTCTTCTGT
GCTTCCCAGACCACTCCTTTCCGTACGATACGCGTCATCCTGATGGAAAT
CTCATGGAGACCTGGTACGAGAGGGTTTTGGCAATGCCCGAATTTCACCG
GGAGGCTAGAGCGGCTGCAGCAGGCTGTAGGGAAAAGGCCAACAGCCGCC
GAAAAAAGTAAGAACTGCGCTGTGATCATTAGGCGAAGAGAAGGCGAGAG
ACGACGGAACTGAAAATTGTGCAGACTGTTACATACATAATATAAGCTGT
CGAGGTAATGGAAAGAATGAAGAAAAAATGTAAATCAAAGTGGCAAAAGT
GAGTGAAAACGCTACCACAGCGGTGTTTGACGTGGACGGGAAAGGAAAGG
GAAATTATGAGAGAGGTAGATTGCGAGGGAAGCTCTGAAATTCCCTTGGA
ATTTCTAGGCTGGAGATGTTTGTGTCAAGCCAGTGCGCCTTATATTCAGG
TGGTTGACGCGGAACCTTAGGAAGAGCGACTTTGCACTTGCTGCAACACT
TCCACCATTCCCATCCCCTAAAACTCTTTGCTTAAACTCGGACAAGGAAT
AAGGGGTGAATAGGCAACTATATTTGGACGGCTCCCCCTCGTATGCAAGT
CCTCGAGGACGCAGGTTGCATGCGATAGTTCAACAGGATTGTAGGAACGG
CAGAAAAAAAGAACCA
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protein sequence of jgi.p|Nanoce1779_2|595725

>mRNA_7133-protein ID=mRNA_7133-protein|Name=jgi.p|Nanoce1779_2|595725|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MDALVDIFLKACPQSLQQPSPDHQPSTITTLPNLTPLVTLRKAAVLLPLF
EHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGETVVQTAMREAMEE
IGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFS
CPLDLFLSPSPGQHSFQDLTWFTDWRMHTFRHGEQWNVWGLTAETLVRLA
LLCFPDHSFPYDTRHPDGNLMETWYERVLAMPEFHREARAAAAGCREKAN
SRRKK*
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mRNA from alignment at scaffold_16:373392..375021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7133 ID=mRNA_7133|Name=jgi.p|Nanoce1779_2|595725|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp|location=Sequence derived from alignment at scaffold_16:373392..375021- (Nannochloropsis oceanica)
TTGAAATATCAGTGCAGCTGGCAACACCAGCCAGTCGCGGTTGATTCTGG
TACGCCACCGTAAGCCTTCGCCGCCTCCTTGCTGCGTCCGACTACCCTCC
ACCGCATACTCTCAGGTGCCACTCCAACGGGTTTCTTTTATGACTACCCT
CCACCGCATACTCTCATGTGCCACTCCAACGGGTTTCTTTTATGACTACC
CTCCACCGCAAACTCTCAGGTGCCACTCCAACGGGTTTCTTTTATGGATG
CCTTGGTCGATATCTTCCTCAAAGCTTGCCCGCAGTCACTGCAACAGCCT
TCACCAGACCACCAGCCGTCCACCATCACGACCCTCCCAAACCTCACTCC
TCTCGTCACACTCCGCAAGGCCGCTGTGCTGCTTCCCTTGTTCGAGCACA
TCGAGGATGGCCGAATCCATTGCTTGCTGACAGTCCGGCCTGAGCACATG
CGCTCGCATGCAGGCGAAGTATGCTTCCCCGGAGGCAAAGTCGAAGCAGG
GGAAACTGTGGTCCAAACTGCCATGAGAGAAGCTATGGAGGAAATTGGCT
TGGCGCCCGAGGCTGTCCGAGTAGTGGGCAAGATGACACCAACCCTTTCT
CTCCACCTTCTTGAAGTCACGCCTGTTGTTGCCATCATCCCGGCTGATTT
CGTGCCCCAACCCAACCCTGAGGTATGTAGGTTTCGTGTCGCCAGAATGC
CCAGTGATGTACAAGGCCGCACTCGCGTGATTGTACCACCTCATTTCTTT
GACTTAGGCTAAACTTCGACATCTGCATTCTCTTAGGAAGTGGCCGAGGT
ATTTTCGTGCCCGCTCGACCTCTTTCTGTCACCGTCACCGGGCCAGCACT
CGTTTCAAGACTTGACGTGGTTTACAGATTGGCGAATGCACACGTTCCGA
CATGGCGAACAGTGGAATGTGTGGGGTTTGACGGCCGAGACCCTAGTCCG
GCTGGCTCTTCTGTGCTTCCCAGACCACTCCTTTCCGTACGATACGCGTC
ATCCTGATGGAAATCTCATGGAGACCTGGTACGAGAGGGTTTTGGCAATG
CCCGAATTTCACCGGGAGGCTAGAGCGGCTGCAGCAGGCTGTAGGGAAAA
GGCCAACAGCCGCCGAAAAAAGTAAGAACTGCGCTGTGATCATTAGGCGA
AGAGAAGGCGAGAGACGACGGAACTGAAAATTGTGCAGACTGTTACATAC
ATAATATAAGCTGTCGAGGTAATGGAAAGAATGAAGAAAAAATGTAAATC
AAAGTGGCAAAAGTGAGTGAAAACGCTACCACAGCGGTGTTTGACGTGGA
CGGGAAAGGAAAGGGAAATTATGAGAGAGGTAGATTGCGAGGGAAGCTCT
GAAATTCCCTTGGAATTTCTAGGCTGGAGATGTTTGTGTCAAGCCAGTGC
GCCTTATATTCAGGTGGTTGACGCGGAACCTTAGGAAGAGCGACTTTGCA
CTTGCTGCAACACTTCCACCATTCCCATCCCCTAAAACTCTTTGCTTAAA
CTCGGACAAGGAATAAGGGGTGAATAGGCAACTATATTTGGACGGCTCCC
CCTCGTATGCAAGTCCTCGAGGACGCAGGTTGCATGCGATAGTTCAACAG
GATTGTAGGAACGGCAGAAAAAAAGAACCA
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Coding sequence (CDS) from alignment at scaffold_16:373392..375021-

>mRNA_7133 ID=mRNA_7133|Name=jgi.p|Nanoce1779_2|595725|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_16:373392..375021- (Nannochloropsis oceanica)
GAAGTGGCCGAGGTATTTTCGTGCCCGCTCGACCTCTTTCTGTCACCGTC
ACCGGGCCAGCACTCGTTTCAAGACTTGACGTGGTTTACAGATTGGCGAA
TGCACACGTTCCGACATGGCGAACAGTGGAATGTGTGGGGTTTGACGGCC
GAGACCCTAGTCCGGCTGGCTCTTCTGTGCTTCCCAGACCACTCCTTTCC
GTACGATACGCGTCATCCTGATGGAAATCTCATGGAGACCTGGTACGAGA
GGGTTTTGGCAATGCCCGAATTTCACCGGGAGGCTAGAGCGGCTGCAGCA
GGCTGTAGGGAAAAGGCCAACAGCCGCCGAAAAAAGTAAATGGATGCCTT
GGTCGATATCTTCCTCAAAGCTTGCCCGCAGTCACTGCAACAGCCTTCAC
CAGACCACCAGCCGTCCACCATCACGACCCTCCCAAACCTCACTCCTCTC
GTCACACTCCGCAAGGCCGCTGTGCTGCTTCCCTTGTTCGAGCACATCGA
GGATGGCCGAATCCATTGCTTGCTGACAGTCCGGCCTGAGCACATGCGCT
CGCATGCAGGCGAAGTATGCTTCCCCGGAGGCAAAGTCGAAGCAGGGGAA
ACTGTGGTCCAAACTGCCATGAGAGAAGCTATGGAGGAAATTGGCTTGGC
GCCCGAGGCTGTCCGAGTAGTGGGCAAGATGACACCAACCCTTTCTCTCC
ACCTTCTTGAAGTCACGCCTGTTGTTGCCATCATCCCGGCTGATTTCGTG
CCCCAACCCAACCCTGAGGAAGTGGCCGAGGTATTTTCGTGCCCGCTCGA
CCTCTTTCTGTCACCGTCACCGGGCCAGCACTCGTTTCAAGACTTGACGT
GGTTTACAGATTGGCGAATGCACACGTTCCGACATGGCGAACAGTGGAAT
GTGTGGGGTTTGACGGCCGAGACCCTAGTCCGGCTGGCTCTTCTGTGCTT
CCCAGACCACTCCTTTCCGTACGATACGCGTCATCCTGATGGAAATCTCA
TGGAGACCTGGTACGAGAGGGTTTTGGCAATGCCCGAATTTCACCGGGAG
GCTAGAGCGGCTGCAGCAGGCTGTAGGGAAAAGGCCAACAGCCGCCGAAA
AAAGTAAATGGATGCCTTGGTCGATATCTTCCTCAAAGCTTGCCCGCAGT
CACTGCAACAGCCTTCACCAGACCACCAGCCGTCCACCATCACGACCCTC
CCAAACCTCACTCCTCTCGTCACACTCCGCAAGGCCGCTGTGCTGCTTCC
CTTGTTCGAGCACATCGAGGATGGCCGAATCCATTGCTTGCTGACAGTCC
GGCCTGAGCACATGCGCTCGCATGCAGGCGAAGTATGCTTCCCCGGAGGC
AAAGTCGAAGCAGGGGAAACTGTGGTCCAAACTGCCATGAGAGAAGCTAT
GGAGGAAATTGGCTTGGCGCCCGAGGCTGTCCGAGTAGTGGGCAAGATGA
CACCAACCCTTTCTCTCCACCTTCTTGAAGTCACGCCTGTTGTTGCCATC
ATCCCGGCTGATTTCGTGCCCCAACCCAACCCTGAG
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Synonyms
Publications