jgi.p|Nanoce1779_2|104357, mRNA_7131 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|104357
Unique Name	mRNA_7131
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1753
Alignment location	scaffold_16:369724..371614 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	104443
Track	FilteredModels2
ProteinId	104357

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:369724..371614 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|104357	gene_7131	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|104357	mRNA_7131-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7131	CDS_7131	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:369724..371614+
coding sequence from alignment at scaffold_16:369724..371614+

mRNA sequence

>mRNA_7131 ID=mRNA_7131|Name=jgi.p|Nanoce1779_2|104357|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp
AAGAAGCATGTGCTTTGTATTTCTGATATTTACGCTTTCCTTTGCTCTAG
ATCCACTCATACTCCAATTTATATGTTCTCCTAGGTGTATGACATTGGTG
GGGGCAAGATCCTGGGCACGGGCATCAGCGGCATGGTGCGGGTGGTGCGG
CACTTGACCACAGGCAACACGTATGCGATGAAGACGCTGCACCTGAACCG
GCTCAAGTCTAAGGCCTCACTAGCCGATCTGCGCAATGAGGTGAGGATCA
TGAGCGAGCTTGACCACCCCAATATCGTGCAGCTTTACGAGACCTTCGAG
ACGGATGACCACATCTTTCTGATCATGGAGCTGTGCACGGGCGGCGAGCT
TCTGGATAAGCTCCACCGACAGGAGGGCCACCACTACTCGGAACAGGTGG
CCTCACAGCTGGTGAAGAAGATGGTGGGCGCCATTCGCTACTGCCACGAC
CATCACATCGCCCATCGCGACCTCAAGCTCGAGAACTTCCTCTTCGAGAG
CGACAACCCCGACGCCGAGCTCAAGCTCATCGACTTTGGCCTCTCACGAC
ACTACCACGACAACCAGCGGATGCACCGGCCCGTAGGCACGCCGTATTAC
GTGGACCCATCCGTGTTGGAGGGCTCATACACGCAGGAGTGCGACATGTG
GTCCATTGGCGTCATTGCCTACATGCTTCTCAGCGGTCGTCCGCCCTTCT
ATGGCAACACAGACGACGAAACCCTGGCCCGGGTACGGACGGGCAAGTTC
ACCTTTCCGCCCTCGGCTTTCGAGCAAGTCTCCGAGCAGGCCAAGGACTT
CATCTCGCGGCTGCTGGTGGTAGACCAGACGGAGCGCATGAACGCGCGGC
AAGCCCAAACCCACCCCTGGCTGCATTCCTGGGACCAGTCGCCCGAGGCC
CTGCGCGCGGACATCTTGGGTTCGCTGCGCACCTTCCACAAGTTCAGTAC
CTTGAAAAAAGTGGCCATGGAGGTAGTGGCGTTCACCCTGCGGCCCGACC
AGATCAAGGGCCTTCGTCGCGAATTCGAAAAGGTTGACGTCTGCAGCAAC
GGTGAGATCACCCTGGAGGAGCTCTCGCGCGCCCTCGAGTCATCGGGATT
GCTCAGCCCTGCCGATTTGGGAGCGCTGGTCAAAGGCCTGGACGTGGGCC
GGCAGCACGCAGGCACGATTTCCTGGCACGAGTTTCTGGCCGCCACCATG
GATGCAGCCTTATTGGATGAGGAGCATATACAGCTTGCCTTCCAACGCAT
TGACACGGGCCGCTCTGGTTTTATCTCCAAGGAGAACTTCGCCGAGCTAG
TGGGTGCTGACATGACGCCCGAGCAGGTTCAGCAGGTCTTTGCCGAGGTG
GACCTCGACCAAGACGGAAAGCTTTCCTGCGAAGAGTTCGCCAGCCTCAT
GAAGGGCACGGCCACACCTCAACCTCCCCTCCGCACTGCTGCACCCGGCG
CGGGTCGGCGTGGCCCCGGAAATGTGAACGGTGGGCGTGCTGAGCCGATG
CTGGGCGCCGACTCCAGCTCCTCTTCTTTGACTTCGATGAATTCCGGCTC
GGTTTCCTCTGCCTCCTCCTCCTCCTCTACTCCGTCAAACTCGCCTGAAT
AAGCTGCAGCGCCCCCTAAATCATTTGATGGCCAAACACTCCCCACACAC
CAGCTTAGAGATCAAATAAGGGAGCGTGGGGTGGATTTGAAGCTATGCAT
TTCTATTTTTAGCGGTTGGGCGAGTACCCCCCCCCCCCTCCCCGCCCCCC
GCG

protein sequence of jgi.p|Nanoce1779_2|104357

>mRNA_7131-protein ID=mRNA_7131-protein|Name=jgi.p|Nanoce1779_2|104357|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MVRVVRHLTTGNTYAMKTLHLNRLKSKASLADLRNEVRIMSELDHPNIVQ
LYETFETDDHIFLIMELCTGGELLDKLHRQEGHHYSEQVASQLVKKMVGA
IRYCHDHHIAHRDLKLENFLFESDNPDAELKLIDFGLSRHYHDNQRMHRP
VGTPYYVDPSVLEGSYTQECDMWSIGVIAYMLLSGRPPFYGNTDDETLAR
VRTGKFTFPPSAFEQVSEQAKDFISRLLVVDQTERMNARQAQTHPWLHSW
DQSPEALRADILGSLRTFHKFSTLKKVAMEVVAFTLRPDQIKGLRREFEK
VDVCSNGEITLEELSRALESSGLLSPADLGALVKGLDVGRQHAGTISWHE
FLAATMDAALLDEEHIQLAFQRIDTGRSGFISKENFAELVGADMTPEQVQ
QVFAEVDLDQDGKLSCEEFASLMKGTATPQPPLRTAAPGAGRRGPGNVNG
GRAEPMLGADSSSSSLTSMNSGSVSSASSSSSTPSNSPE*

mRNA from alignment at scaffold_16:369724..371614+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7131 ID=mRNA_7131|Name=jgi.p|Nanoce1779_2|104357|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at scaffold_16:369724..371614+ (Nannochloropsis oceanica)
AAGAAGCATGTGCTTTGTATTTCTGATATTTACGCTTTCCTTTGCTCTAG
ATCCACTCATACTCCAATTTATATGTTCTCCTAGGTGTATGACATTGGTG
GGGGCAAGATCCTGGGCACGGGCATCAGCGGCATGGTGCGGGTGGTGCGG
CACTTGACCACAGGCAACACGTATGCGATGAAGACGCTGCACCTGAACCG
GCTCAAGTCTAAGGCCTCACTAGCCGATCTGCGCAATGAGGTGAGGATCA
TGAGCGAGCTTGACCACCCCAATATCGTGCAGCTTTACGAGACCTTCGAG
ACGGATGACCACATCTTTCTGATCATGGAGCTGTGCACGGGCGGCGAGCT
TCTGGATAAGCTCCACCGACAGGAGGGCCACCACTACTCGGAACAGGTGG
CCTCACAGCTGGTGAAGAAGATGGTGGGCGCCATTCGCTACTGCCACGAC
CATCACATCGCCCATCGCGACCTCAAGCTCGAGAACTTCCTCTTCGAGAG
CGACAACCCCGACGCCGAGCTCAAGCTCATCGACTTTGGCCTCTCACGAC
ACTACCAGTAAGTAGCGACGGAAGAGTGGAACAGAACGAAAAATGCTTTG
TTTCGAAGAACAAAGTGTTGTTCGAAGAACAAAGTGCTGACCCCTCCCTA
CCCCCTCCTTTCCTCTATTCCTCCACCCATCCCTGCACCCCACAGCGACA
ACCAGCGGATGCACCGGCCCGTAGGCACGCCGTATTACGTGGACCCATCC
GTGTTGGAGGGCTCATACACGCAGGAGTGCGACATGTGGTCCATTGGCGT
CATTGCCTACATGCTTCTCAGCGGTCGTCCGCCCTTCTATGGCAACACAG
ACGACGAAACCCTGGCCCGGGTACGGACGGGCAAGTTCACCTTTCCGCCC
TCGGCTTTCGAGCAAGTCTCCGAGCAGGCCAAGGACTTCATCTCGCGGCT
GCTGGTGGTAGACCAGACGGAGCGCATGAACGCGCGGCAAGCCCAAACCC
ACCCCTGGCTGCATTCCTGGGACCAGTCGCCCGAGGCCCTGCGCGCGGAC
ATCTTGGGTTCGCTGCGCACCTTCCACAAGTTCAGTACCTTGAAAAAAGT
GGCCATGGAGGTAGTGGCGTTCACCCTGCGGCCCGACCAGATCAAGGGCC
TTCGTCGCGAATTCGAAAAGGTTGACGTCTGCAGCAACGGTGAGATCACC
CTGGAGGAGCTCTCGCGCGCCCTCGAGTCATCGGGATTGCTCAGCCCTGC
CGATTTGGGAGCGCTGGTCAAAGGCCTGGACGTGGGCCGGCAGCACGCAG
GCACGATTTCCTGGCACGAGTTTCTGGCCGCCACCATGGATGCAGCCTTA
TTGGATGAGGAGCATATACAGCTTGCCTTCCAACGCATTGACACGGGCCG
CTCTGGTTTTATCTCCAAGGAGAACTTCGCCGAGCTAGTGGGTGCTGACA
TGACGCCCGAGCAGGTTCAGCAGGTCTTTGCCGAGGTGGACCTCGACCAA
GACGGAAAGCTTTCCTGCGAAGAGTTCGCCAGCCTCATGAAGGGCACGGC
CACACCTCAACCTCCCCTCCGCACTGCTGCACCCGGCGCGGGTCGGCGTG
GCCCCGGAAATGTGAACGGTGGGCGTGCTGAGCCGATGCTGGGCGCCGAC
TCCAGCTCCTCTTCTTTGACTTCGATGAATTCCGGCTCGGTTTCCTCTGC
CTCCTCCTCCTCCTCTACTCCGTCAAACTCGCCTGAATAAGCTGCAGCGC
CCCCTAAATCATTTGATGGCCAAACACTCCCCACACACCAGCTTAGAGAT
CAAATAAGGGAGCGTGGGGTGGATTTGAAGCTATGCATTTCTATTTTTAG
CGGTTGGGCGAGTACCCCCCCCCCCCTCCCCGCCCCCCGCG

Coding sequence (CDS) from alignment at scaffold_16:369724..371614+

>mRNA_7131 ID=mRNA_7131|Name=jgi.p|Nanoce1779_2|104357|organism=Nannochloropsis oceanica|type=CDS|length=2940bp|location=Sequence derived from alignment at scaffold_16:369724..371614+ (Nannochloropsis oceanica)
ATGGTGCGGGTGGTGCGGCACTTGACCACAGGCAACACGTATGCGATGAA
GACGCTGCACCTGAACCGGCTCAAGTCTAAGGCCTCACTAGCCGATCTGC
GCAATGAGGTGAGGATCATGAGCGAGCTTGACCACCCCAATATCGTGCAG
CTTTACGAGACCTTCGAGACGGATGACCACATCTTTCTGATCATGGAGCT
GTGCACGGGCGGCGAGCTTCTGGATAAGCTCCACCGACAGGAGGGCCACC
ACTACTCGGAACAGGTGGCCTCACAGCTGGTGAAGAAGATGGTGGGCGCC
ATTCGCTACTGCCACGACCATCACATCGCCCATCGCGACCTCAAGCTCGA
GAACTTCCTCTTCGAGAGCGACAACCCCGACGCCGAGCTCAAGCTCATCG
ACTTTGGCCTCTCACGACACTACCACGACAACCAGCGGATGCACCGGCCC
GTAGGCACGCCGTATTACGTGGACCCATCCGTGTTGGAGGGCTCATACAC
GCAGGAGTGCGACATGTGGTCCATTGGCGTCATTGCCTACATGCTTCTCA
GCGGTCGTCCGCCCTTCTATGGCAACACAGACGACGAAACCCTGGCCCGG
GTACGGACGGGCAAGTTCACCTTTCCGCCCTCGGCTTTCGAGCAAGTCTC
CGAGCAGGCCAAGGACTTCATCTCGCGGCTGCTGGTGGTAGACCAGACGG
AGCGCATGAACGCGCGGCAAGCCCAAACCCACCCCTGGCTGCATTCCTGG
GACCAGTCGCCCGAGGCCCTGCGCGCGGACATCTTGGGTTCGCTGCGCAC
CTTCCACAAGTTCAGTACCTTGAAAAAAGTGGCCATGGAGGTAGTGGCGT
TCACCCTGCGGCCCGACCAGATCAAGGGCCTTCGTCGCGAATTCGAAAAG
GTTGACGTCTGCAGCAACGGTGAGATCACCCTGGAGGAGCTCTCGCGCGC
CCTCGAGTCATCGGGATTGCTCAGCCCTGCCGATTTGGGAGCGCTGGTCA
AAGGCCTGGACGTGGGCCGGCAGCACGCAGGCACGATTTCCTGGCACGAG
TTTCTGGCCGCCACCATGGATGCAGCCTTATTGGATGAGGAGCATATACA
GCTTGCCTTCCAACGCATTGACACGGGCCGCTCTGGTTTTATCTCCAAGG
AGAACTTCGCCGAGCTAGTGGGTGCTGACATGACGCCCGAGCAGGTTCAG
CAGGTCTTTGCCGAGGTGGACCTCGACCAAGACGGAAAGCTTTCCTGCGA
AGAGTTCGCCAGCCTCATGAAGGGCACGGCCACACCTCAACCTCCCCTCC
GCACTGCTGCACCCGGCGCGGGTCGGCGTGGCCCCGGAAATGTGAACGGT
GGGCGTGCTGAGCCGATGCTGGGCGCCGACTCCAGCTCCTCTTCTTTGAC
TTCGATGAATTCCGGCTCGGTTTCCTCTGCCTCCTCCTCCTCCTCTACTC
CGTCAAACTCGCCTGAATAAATGGTGCGGGTGGTGCGGCACTTGACCACA
GGCAACACGTATGCGATGAAGACGCTGCACCTGAACCGGCTCAAGTCTAA
GGCCTCACTAGCCGATCTGCGCAATGAGGTGAGGATCATGAGCGAGCTTG
ACCACCCCAATATCGTGCAGCTTTACGAGACCTTCGAGACGGATGACCAC
ATCTTTCTGATCATGGAGCTGTGCACGGGCGGCGAGCTTCTGGATAAGCT
CCACCGACAGGAGGGCCACCACTACTCGGAACAGGTGGCCTCACAGCTGG
TGAAGAAGATGGTGGGCGCCATTCGCTACTGCCACGACCATCACATCGCC
CATCGCGACCTCAAGCTCGAGAACTTCCTCTTCGAGAGCGACAACCCCGA
CGCCGAGCTCAAGCTCATCGACTTTGGCCTCTCACGACACTACCACGACA
ACCAGCGGATGCACCGGCCCGTAGGCACGCCGTATTACGTGGACCCATCC
GTGTTGGAGGGCTCATACACGCAGGAGTGCGACATGTGGTCCATTGGCGT
CATTGCCTACATGCTTCTCAGCGGTCGTCCGCCCTTCTATGGCAACACAG
ACGACGAAACCCTGGCCCGGGTACGGACGGGCAAGTTCACCTTTCCGCCC
TCGGCTTTCGAGCAAGTCTCCGAGCAGGCCAAGGACTTCATCTCGCGGCT
GCTGGTGGTAGACCAGACGGAGCGCATGAACGCGCGGCAAGCCCAAACCC
ACCCCTGGCTGCATTCCTGGGACCAGTCGCCCGAGGCCCTGCGCGCGGAC
ATCTTGGGTTCGCTGCGCACCTTCCACAAGTTCAGTACCTTGAAAAAAGT
GGCCATGGAGGTAGTGGCGTTCACCCTGCGGCCCGACCAGATCAAGGGCC
TTCGTCGCGAATTCGAAAAGGTTGACGTCTGCAGCAACGGTGAGATCACC
CTGGAGGAGCTCTCGCGCGCCCTCGAGTCATCGGGATTGCTCAGCCCTGC
CGATTTGGGAGCGCTGGTCAAAGGCCTGGACGTGGGCCGGCAGCACGCAG
GCACGATTTCCTGGCACGAGTTTCTGGCCGCCACCATGGATGCAGCCTTA
TTGGATGAGGAGCATATACAGCTTGCCTTCCAACGCATTGACACGGGCCG
CTCTGGTTTTATCTCCAAGGAGAACTTCGCCGAGCTAGTGGGTGCTGACA
TGACGCCCGAGCAGGTTCAGCAGGTCTTTGCCGAGGTGGACCTCGACCAA
GACGGAAAGCTTTCCTGCGAAGAGTTCGCCAGCCTCATGAAGGGCACGGC
CACACCTCAACCTCCCCTCCGCACTGCTGCACCCGGCGCGGGTCGGCGTG
GCCCCGGAAATGTGAACGGTGGGCGTGCTGAGCCGATGCTGGGCGCCGAC
TCCAGCTCCTCTTCTTTGACTTCGATGAATTCCGGCTCGGTTTCCTCTGC
CTCCTCCTCCTCCTCTACTCCGTCAAACTCGCCTGAATAA

Synonyms

Publications