jgi.p|Nanoce1779_2|573891, mRNA_713 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573891
Unique Name	mRNA_713
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	928
Alignment location	scaffold_2:261163..262090 -

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Properties


Property Name	Value
TranscriptId	573977
Track	FilteredModels2
ProteinId	573891

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:261163..262090 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573891	gene_713	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573891	mRNA_713-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_713	CDS_713	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:261163..262090-
coding sequence from alignment at scaffold_2:261163..262090-

mRNA sequence

>mRNA_713 ID=mRNA_713|Name=jgi.p|Nanoce1779_2|573891|organism=Nannochloropsis oceanica|type=mRNA|length=928bp
GGGAAGGGGAGGGAGGGAGGAAGGGTTGAAAACAGATTGGGGGGGAAATG
AAGACAGGCGTGATAGGAGTGGAGCCTGTGGCCAGTGCTGCCTACTCTCG
TCATCGCGGATGCCAAAGTTTGGGTCTGGGGGGAAAGGCCCATGACCTCG
AGGAGCAAAGCCTCCGTGCCCTTCATGTTGTTCTTGAGAGGGCGGGTCGT
GCGGTCCTGAGGACCACGTTGGAGGTGGCAGCCGCAGATAAGCACTACCA
TCACTATAACCGCCATGAGCGTGGGGGGAATCAAGGACCTGAGTAGAGGA
GGGATGGAATGGACGACCGTAGTGGTTTGTGGAGGGGTTTGTGGGGGAGC
CGCGGGGGGGAGAAAAGGGGGATTGGGTGAATGGCTGTTGTGGCTCATGT
CGTTGCTGATGGGGCAAGAGATCTCTTCCTATTTTTCCTATTACTCCTCC
ACCTCTTCTTCCACGTGGTCCTGGTCCCCCACCTCTTACAGCTCCTCCTC
CCCGCCTTCCCCCTCTTCCTCCTCCCCCATTGGGGCCGGAGGCCATCTGT
CCATCGTACACGTCCGCCAGCATCTGCTGGCTGATCACCCAATGCGGCTG
CGAGGTCCGCAACAAGTGCGAGACTTCGTTCTGGAAAGCGCCAATTTAGG
TGAGGAGGAAGGGAGGGAGGGAGGGATTAAAGTCAGTCAAAAAGTTGTGT
ACGATCGTCACGGTCTTGCCTCGTGCACGGACACAAAACGAAATACCCAC
CATGGTCAAACTCCCTCTGTGCATCATCACCGCAACCGCGTTGTTCAGCA
CGTCAAACGGTGGGTGAGAGGCTCGAGTGCTACCTTCAGCACTACGGAGG
CCTGGTTGGCGTGGACGTGACATGGGAAAGAAAGGCAGGGGGCAGCCTAT
TTTCCCTTGTGTGCCACGCACTGCCTGT

protein sequence of jgi.p|Nanoce1779_2|573891

>mRNA_713-protein ID=mRNA_713-protein|Name=jgi.p|Nanoce1779_2|573891|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MSVGGIKDLSRGGMEWTTVVVCGGVCGGAAGGRKGGLGEWLLWLMSLLMG
QEISSYFSYYSSTSSSTWSWSPTSYSSSSPPSPSSSSPIGAGGHLSIVHV
RQHLLADHPMRLRGPQQVRDFVLESANLGEEEGREGGIKVSQKVVYDRHG
LASCTDTKRNTHHGQTPSVHHHRNRVVQHVKRWVRGSSATFSTTEAWLAW
T*

mRNA from alignment at scaffold_2:261163..262090-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_713 ID=mRNA_713|Name=jgi.p|Nanoce1779_2|573891|organism=Nannochloropsis oceanica|type=mRNA|length=928bp|location=Sequence derived from alignment at scaffold_2:261163..262090- (Nannochloropsis oceanica)
GGGAAGGGGAGGGAGGGAGGAAGGGTTGAAAACAGATTGGGGGGGAAATG
AAGACAGGCGTGATAGGAGTGGAGCCTGTGGCCAGTGCTGCCTACTCTCG
TCATCGCGGATGCCAAAGTTTGGGTCTGGGGGGAAAGGCCCATGACCTCG
AGGAGCAAAGCCTCCGTGCCCTTCATGTTGTTCTTGAGAGGGCGGGTCGT
GCGGTCCTGAGGACCACGTTGGAGGTGGCAGCCGCAGATAAGCACTACCA
TCACTATAACCGCCATGAGCGTGGGGGGAATCAAGGACCTGAGTAGAGGA
GGGATGGAATGGACGACCGTAGTGGTTTGTGGAGGGGTTTGTGGGGGAGC
CGCGGGGGGGAGAAAAGGGGGATTGGGTGAATGGCTGTTGTGGCTCATGT
CGTTGCTGATGGGGCAAGAGATCTCTTCCTATTTTTCCTATTACTCCTCC
ACCTCTTCTTCCACGTGGTCCTGGTCCCCCACCTCTTACAGCTCCTCCTC
CCCGCCTTCCCCCTCTTCCTCCTCCCCCATTGGGGCCGGAGGCCATCTGT
CCATCGTACACGTCCGCCAGCATCTGCTGGCTGATCACCCAATGCGGCTG
CGAGGTCCGCAACAAGTGCGAGACTTCGTTCTGGAAAGCGCCAATTTAGG
TGAGGAGGAAGGGAGGGAGGGAGGGATTAAAGTCAGTCAAAAAGTTGTGT
ACGATCGTCACGGTCTTGCCTCGTGCACGGACACAAAACGAAATACCCAC
CATGGTCAAACTCCCTCTGTGCATCATCACCGCAACCGCGTTGTTCAGCA
CGTCAAACGGTGGGTGAGAGGCTCGAGTGCTACCTTCAGCACTACGGAGG
CCTGGTTGGCGTGGACGTGACATGGGAAAGAAAGGCAGGGGGCAGCCTAT
TTTCCCTTGTGTGCCACGCACTGCCTGT

Coding sequence (CDS) from alignment at scaffold_2:261163..262090-

>mRNA_713 ID=mRNA_713|Name=jgi.p|Nanoce1779_2|573891|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_2:261163..262090- (Nannochloropsis oceanica)
ATGAGCGTGGGGGGAATCAAGGACCTGAGTAGAGGAGGGATGGAATGGAC
GACCGTAGTGGTTTGTGGAGGGGTTTGTGGGGGAGCCGCGGGGGGGAGAA
AAGGGGGATTGGGTGAATGGCTGTTGTGGCTCATGTCGTTGCTGATGGGG
CAAGAGATCTCTTCCTATTTTTCCTATTACTCCTCCACCTCTTCTTCCAC
GTGGTCCTGGTCCCCCACCTCTTACAGCTCCTCCTCCCCGCCTTCCCCCT
CTTCCTCCTCCCCCATTGGGGCCGGAGGCCATCTGTCCATCGTACACGTC
CGCCAGCATCTGCTGGCTGATCACCCAATGCGGCTGCGAGGTCCGCAACA
AGTGCGAGACTTCGTTCTGGAAAGCGCCAATTTAGGTGAGGAGGAAGGGA
GGGAGGGAGGGATTAAAGTCAGTCAAAAAGTTGTGTACGATCGTCACGGT
CTTGCCTCGTGCACGGACACAAAACGAAATACCCACCATGGTCAAACTCC
CTCTGTGCATCATCACCGCAACCGCGTTGTTCAGCACGTCAAACGGTGGG
TGAGAGGCTCGAGTGCTACCTTCAGCACTACGGAGGCCTGGTTGGCGTGG
ACGTGA

Synonyms

Publications