jgi.p|Nanoce1779_2|595693, mRNA_7124 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595693
Unique NamemRNA_7124
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length796
Alignment locationscaffold_16:339938..341027 -

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Properties
Property NameValue
TranscriptId595779
TrackFilteredModels2
ProteinId595693
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:339938..341027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595693gene_7124Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595693mRNA_7124-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7124CDS_7124Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7124 ID=mRNA_7124|Name=jgi.p|Nanoce1779_2|595693|organism=Nannochloropsis oceanica|type=mRNA|length=796bp
AGGCATCTCGCACAACCCCTCAACACAAAATGAGTGGAGGCATCGCCCGG
GGACGGTTGCAAGAGGAGAGGAAAGCCTGGCGCAAGGACCACCCCCACGG
CTTTATTGCGCGCCCTACAATGGGTGCCGATGGCTCGATGAACTTGATGG
TCTGGGACTGTGGCATTCCGGGAAAGGAGGGAACGGACTGGGACGGCGGC
GTATACAAGGTAACAATGGAATTCTCGGAAGACTATCCGTCCAAGCCGCC
CAAATGCAAGTTCGTACCGGCCCTCTTCCACCCGAACGTCTACCCGTCCG
GCACTGTCTGCCTCTCCATCCTCAACGAAGACGAGGACTGGCGGCCTGCC
ATCACGGTCAAGCAGATGCTGCTGGGCATTCAGGACCTGTTGGACAGCCC
AAATCCCCAGAGTCCGGCCCAGGCGGAGGCCTACCAGCTGTTTGTGACCA
ACCGGGAGGAGTACCGCCGCCGAGTGCGCATCGAGGCCAAGCGCAACACG
CCCGCAACTTAGTGAGTTGATGAGTGAGGAAGACATAGAGGCATAGAAAA
ATAGGTGTGGCCAGGAGATGTAGTGGTGGAATGGGGGGTTGTACAATTAA
GATAGGGTTATGGGGTTTTGTAGGCCTTGCGCTAGTGAAAAGAGAGCGGG
ACGAATGCCGCGTGAGCAGCATAAACAAGAACGAGGATTTCGATTTAAAA
ACGATTGTGTGTGTGAAATATTTATAACAATTAGGATGGGAGAAAGCAAG
GAAGAATCGCACAAAGAAGAAAACCCACAATTCGTCTGTCGATGTA
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protein sequence of jgi.p|Nanoce1779_2|595693

>mRNA_7124-protein ID=mRNA_7124-protein|Name=jgi.p|Nanoce1779_2|595693|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKE
GTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNE
DEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVR
IEAKRNTPAT*
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mRNA from alignment at scaffold_16:339938..341027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7124 ID=mRNA_7124|Name=jgi.p|Nanoce1779_2|595693|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at scaffold_16:339938..341027- (Nannochloropsis oceanica)
AGGCATCTCGCACAACCCCTCAACACAAAATGAGTGGAGGCATCGCCCGG
GGACGGTTGCAAGAGGAGAGGAAAGCCTGGCGCAAGGACCACCCCCACGG
CTTTATTGCGCGCCCTACAATGGGTGCCGATGGCTCGATGAACTTGATGG
TCTGGGACTGTGGCATTCCGGGAAAGGTACGTGAGAGCGGAGTGCGGCGG
TGATCAGGGAGGAGGTAGATGTGGGACGAAGAAAGAAGAGAGGGAGAGGG
CTTGCTGCATTTGTGTATGTATGTTGTGTTTTGGCAACCAGCTTCTTGAT
CACTTTGAAATATGAACGCTGTATCTTTTTCTGTACTACTCATTGCCTTT
GGGGACGTGGCTAGAAGTGGAATTCGGCCTCGGTGTCGATTGTGGGCTGG
TCATTCTTTGTGGACGTGCAATGACCTCTTGTTTTTTTCCTCCCCACCTT
TCTTCTCTTTCTCAAAAAAGGAGGGAACGGACTGGGACGGCGGCGTATAC
AAGGTAACAATGGAATTCTCGGAAGACTATCCGTCCAAGCCGCCCAAATG
CAAGTTCGTACCGGCCCTCTTCCACCCGAACGTCTACCCGTCCGGCACTG
TCTGCCTCTCCATCCTCAACGAAGACGAGGACTGGCGGCCTGCCATCACG
GTCAAGCAGATGCTGCTGGGCATTCAGGACCTGTTGGACAGCCCAAATCC
CCAGAGTCCGGCCCAGGCGGAGGCCTACCAGCTGTTTGTGACCAACCGGG
AGGAGTACCGCCGCCGAGTGCGCATCGAGGCCAAGCGCAACACGCCCGCA
ACTTAGTGAGTTGATGAGTGAGGAAGACATAGAGGCATAGAAAAATAGGT
GTGGCCAGGAGATGTAGTGGTGGAATGGGGGGTTGTACAATTAAGATAGG
GTTATGGGGTTTTGTAGGCCTTGCGCTAGTGAAAAGAGAGCGGGACGAAT
GCCGCGTGAGCAGCATAAACAAGAACGAGGATTTCGATTTAAAAACGATT
GTGTGTGTGAAATATTTATAACAATTAGGATGGGAGAAAGCAAGGAAGAA
TCGCACAAAGAAGAAAACCCACAATTCGTCTGTCGATGTA
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Coding sequence (CDS) from alignment at scaffold_16:339938..341027-

>mRNA_7124 ID=mRNA_7124|Name=jgi.p|Nanoce1779_2|595693|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_16:339938..341027- (Nannochloropsis oceanica)
GAGGGAACGGACTGGGACGGCGGCGTATACAAGGTAACAATGGAATTCTC
GGAAGACTATCCGTCCAAGCCGCCCAAATGCAAGTTCGTACCGGCCCTCT
TCCACCCGAACGTCTACCCGTCCGGCACTGTCTGCCTCTCCATCCTCAAC
GAAGACGAGGACTGGCGGCCTGCCATCACGGTCAAGCAGATGCTGCTGGG
CATTCAGGACCTGTTGGACAGCCCAAATCCCCAGAGTCCGGCCCAGGCGG
AGGCCTACCAGCTGTTTGTGACCAACCGGGAGGAGTACCGCCGCCGAGTG
CGCATCGAGGCCAAGCGCAACACGCCCGCAACTTAGATGAGTGGAGGCAT
CGCCCGGGGACGGTTGCAAGAGGAGAGGAAAGCCTGGCGCAAGGACCACC
CCCACGGCTTTATTGCGCGCCCTACAATGGGTGCCGATGGCTCGATGAAC
TTGATGGTCTGGGACTGTGGCATTCCGGGAAAGGAGGGAACGGACTGGGA
CGGCGGCGTATACAAGGTAACAATGGAATTCTCGGAAGACTATCCGTCCA
AGCCGCCCAAATGCAAGTTCGTACCGGCCCTCTTCCACCCGAACGTCTAC
CCGTCCGGCACTGTCTGCCTCTCCATCCTCAACGAAGACGAGGACTGGCG
GCCTGCCATCACGGTCAAGCAGATGCTGCTGGGCATTCAGGACCTGTTGG
ACAGCCCAAATCCCCAGAGTCCGGCCCAGGCGGAGGCCTACCAGCTGTTT
GTGACCAACCGGGAGGAGTACCGCCGCCGAGTGCGCATCGAGGCCAAGCG
CAACACGCCCGCAACTTAGATGAGTGGAGGCATCGCCCGGGGACGGTTGC
AAGAGGAGAGGAAAGCCTGGCGCAAGGACCACCCCCACGGCTTTATTGCG
CGCCCTACAATGGGTGCCGATGGCTCGATGAACTTGATGGTCTGGGACTG
TGGCATTCCGGGAAAG
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Synonyms
Publications